Wall clock time and date at job start Mon Mar 30 2020 02:05:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46903 * 109.46839 * 2 1 4 4 C 1.46894 * 111.00003 * 287.52837 * 3 2 1 5 5 C 1.50700 * 109.47200 * 159.66012 * 4 3 2 6 6 H 1.07997 * 119.99896 * 3.46385 * 5 4 3 7 7 C 1.37875 * 120.00217 * 183.47702 * 5 4 3 8 8 N 1.31521 * 120.00086 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99951 * 179.97438 * 7 5 4 10 10 H 1.48490 * 109.47312 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.46917 * 119.99746 * 9 7 5 12 12 H 1.48498 * 109.47050 * 239.99317 * 9 7 5 13 13 C 1.46900 * 110.99711 * 163.57714 * 3 2 1 14 14 C 1.50705 * 109.47160 * 293.95566 * 13 3 2 15 15 C 1.38272 * 119.93958 * 270.29805 * 14 13 3 16 16 C 1.38138 * 120.05450 * 180.29903 * 15 14 13 17 17 C 1.38734 * 119.94108 * 359.42422 * 16 15 14 18 18 O 1.35901 * 120.05807 * 180.29893 * 17 16 15 19 19 C 1.42901 * 116.99865 * 4.32539 * 18 17 16 20 20 C 1.53002 * 109.47392 * 155.19321 * 19 18 17 21 21 C 1.53005 * 109.47239 * 275.19720 * 19 18 17 22 22 C 1.38730 * 119.88914 * 0.27835 * 17 16 15 23 23 C 1.38146 * 119.94803 * 359.97438 * 22 17 16 24 24 H 1.09003 * 109.47229 * 306.89160 * 1 2 3 25 25 H 1.08999 * 109.47294 * 66.89043 * 1 2 3 26 26 H 1.08994 * 109.46949 * 186.89257 * 1 2 3 27 27 H 1.09000 * 109.47030 * 240.00486 * 2 1 3 28 28 H 1.08998 * 109.46966 * 119.99827 * 2 1 3 29 29 H 1.09000 * 109.47632 * 279.65668 * 4 3 2 30 30 H 1.08999 * 109.47265 * 39.65796 * 4 3 2 31 31 H 0.96998 * 119.99826 * 180.02562 * 8 7 5 32 32 H 1.09002 * 109.47418 * 173.95540 * 13 3 2 33 33 H 1.09005 * 109.47574 * 53.95346 * 13 3 2 34 34 H 1.08004 * 119.97446 * 0.02562 * 15 14 13 35 35 H 1.08003 * 120.03469 * 179.69972 * 16 15 14 36 36 H 1.09005 * 109.46985 * 35.19315 * 19 18 17 37 37 H 1.08998 * 109.46744 * 59.99898 * 20 19 18 38 38 H 1.08996 * 109.47157 * 179.97438 * 20 19 18 39 39 H 1.08996 * 109.47254 * 300.00375 * 20 19 18 40 40 H 1.08995 * 109.46954 * 59.99709 * 21 19 18 41 41 H 1.08994 * 109.46960 * 179.97438 * 21 19 18 42 42 H 1.09005 * 109.46802 * 299.99708 * 21 19 18 43 43 H 1.08008 * 120.03178 * 180.02562 * 22 17 16 44 44 H 1.07992 * 119.97511 * 180.02562 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.8057 2.0190 -1.3077 5 6 1.8386 3.5175 -1.1509 6 1 2.0576 3.9550 -0.1881 7 6 1.5889 4.3299 -2.2365 8 7 1.3224 3.7972 -3.4091 9 14 1.6290 6.1873 -2.0419 10 1 1.9491 6.5307 -0.6332 11 1 2.6667 6.7567 -2.9388 12 1 0.3025 6.7512 -2.3993 13 6 3.4354 1.4429 0.3877 14 6 3.5808 1.0111 1.8243 15 6 3.4975 1.9476 2.8382 16 6 3.6366 1.5554 4.1554 17 6 3.8482 0.2188 4.4612 18 8 3.9794 -0.1705 5.7566 19 6 3.7943 0.8326 6.7574 20 6 3.3657 0.1715 8.0690 21 6 5.1077 1.5874 6.9721 22 6 3.9253 -0.7197 3.4425 23 6 3.7907 -0.3216 2.1265 24 1 -0.3634 0.6169 0.8219 25 1 -0.3634 0.4033 -0.9452 26 1 -0.3633 -1.0202 0.1233 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 2.5924 1.7084 -1.9952 30 1 0.8364 1.7164 -1.7040 31 1 1.1471 4.3688 -4.1729 32 1 3.8012 2.4636 0.2763 33 1 4.0149 0.7773 -0.2521 34 1 3.3278 2.9873 2.5998 35 1 3.5763 2.2879 4.9468 36 1 3.0226 1.5310 6.4335 37 1 4.1373 -0.5269 8.3929 38 1 3.2249 0.9366 8.8325 39 1 2.4300 -0.3662 7.9161 40 1 5.4130 2.0583 6.0377 41 1 4.9664 2.3528 7.7351 42 1 5.8794 0.8890 7.2961 43 1 4.0896 -1.7609 3.6780 44 1 3.8502 -1.0519 1.3331 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081513729.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:09 Heat of formation + Delta-G solvation = -37.227237 kcal Electronic energy + Delta-G solvation = -21510.697908 eV Core-core repulsion = 18427.298367 eV Total energy + Delta-G solvation = -3083.399541 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.27257 -39.48327 -37.76665 -34.76930 -34.17629 -32.33927 -31.90618 -30.99252 -28.58843 -28.09356 -26.01206 -24.60418 -24.00083 -22.90548 -21.50461 -21.21349 -19.20042 -18.55899 -17.00484 -16.93024 -16.66544 -16.37354 -15.90825 -15.65011 -15.33599 -15.05231 -14.89343 -14.45732 -14.22220 -14.16670 -13.77387 -13.48470 -13.33226 -13.15584 -13.03624 -12.90585 -12.74525 -12.65718 -12.54299 -12.29028 -12.18720 -12.05590 -11.99501 -11.62179 -11.47727 -11.42489 -11.20603 -10.58155 -9.87576 -9.08825 -8.88606 -8.17436 -6.26971 0.42830 0.50071 1.41048 1.41736 1.55178 2.28200 2.41635 2.78385 3.14337 3.50842 3.83419 3.89342 3.96500 4.00931 4.05181 4.19608 4.24515 4.33438 4.44632 4.49483 4.56374 4.69757 4.71994 4.78470 4.80920 4.84076 4.89554 4.94781 5.01105 5.06291 5.14144 5.21379 5.26783 5.27841 5.28976 5.37630 5.38713 5.46686 5.69832 5.81040 5.86088 6.11739 6.41735 6.54148 6.67181 6.88815 7.42294 8.93206 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.020681 B = 0.003915 C = 0.003512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.562246 B = 7150.269783 C = 7969.995615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.044 3.956 3 N -0.536 5.536 4 C 0.206 3.794 5 C -0.516 4.516 6 H 0.060 0.940 7 C 0.001 3.999 8 N -0.936 5.936 9 Si 0.967 3.033 10 H -0.263 1.263 11 H -0.279 1.279 12 H -0.279 1.279 13 C 0.107 3.893 14 C -0.114 4.114 15 C -0.070 4.070 16 C -0.207 4.207 17 C 0.121 3.879 18 O -0.323 6.323 19 C 0.065 3.935 20 C -0.144 4.144 21 C -0.177 4.177 22 C -0.157 4.157 23 C -0.077 4.077 24 H 0.052 0.948 25 H 0.032 0.968 26 H 0.079 0.921 27 H 0.017 0.983 28 H 0.088 0.912 29 H -0.040 1.040 30 H 0.012 0.988 31 H 0.263 0.737 32 H 0.065 0.935 33 H 0.028 0.972 34 H 0.119 0.881 35 H 0.144 0.856 36 H 0.074 0.926 37 H 0.067 0.933 38 H 0.097 0.903 39 H 0.060 0.940 40 H 0.052 0.948 41 H 0.091 0.909 42 H 0.066 0.934 43 H 0.144 0.856 44 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.597 -7.725 20.856 22.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.084 4.084 3 N -0.261 5.261 4 C 0.080 3.920 5 C -0.554 4.554 6 H 0.079 0.921 7 C -0.197 4.197 8 N -0.577 5.577 9 Si 0.792 3.208 10 H -0.187 1.187 11 H -0.205 1.205 12 H -0.205 1.205 13 C -0.021 4.021 14 C -0.114 4.114 15 C -0.089 4.089 16 C -0.226 4.226 17 C 0.075 3.925 18 O -0.238 6.238 19 C 0.010 3.990 20 C -0.201 4.201 21 C -0.234 4.234 22 C -0.176 4.176 23 C -0.096 4.096 24 H 0.071 0.929 25 H 0.051 0.949 26 H 0.097 0.903 27 H 0.035 0.965 28 H 0.106 0.894 29 H -0.022 1.022 30 H 0.030 0.970 31 H 0.072 0.928 32 H 0.084 0.916 33 H 0.046 0.954 34 H 0.137 0.863 35 H 0.161 0.839 36 H 0.092 0.908 37 H 0.086 0.914 38 H 0.116 0.884 39 H 0.079 0.921 40 H 0.071 0.929 41 H 0.110 0.890 42 H 0.085 0.915 43 H 0.162 0.838 44 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 5.328 -7.606 21.115 23.067 hybrid contribution 0.312 0.797 -1.346 1.596 sum 5.640 -6.809 19.769 21.656 Atomic orbital electron populations 1.21683 0.94947 1.01704 1.01009 1.22215 0.96579 0.89511 1.00116 1.62138 1.16901 1.16307 1.30750 1.19440 0.94042 0.94026 0.84497 1.21494 1.46638 0.91888 0.95414 0.92128 1.25890 0.95019 1.04001 0.94791 1.70094 1.49554 1.37012 1.01027 0.85368 0.77708 0.79265 0.78485 1.18740 1.20469 1.20512 1.20811 0.89083 1.00444 0.91758 1.19746 1.02844 0.94173 0.94684 1.20916 0.96313 0.99673 0.91982 1.21357 1.08394 0.95426 0.97381 1.19061 0.96334 0.92818 0.84268 1.86087 1.86006 1.39257 1.12412 1.22716 0.98387 0.89975 0.87964 1.21867 1.02067 1.02145 0.94058 1.22366 0.97038 1.01080 1.02944 1.20535 1.06715 0.99794 0.90533 1.20962 0.97574 0.94933 0.96100 0.92888 0.94914 0.90262 0.96455 0.89421 1.02236 0.96973 0.92794 0.91612 0.95379 0.86306 0.83872 0.90778 0.91428 0.88437 0.92061 0.92892 0.89013 0.91538 0.83812 0.84587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.78 9.87 71.98 0.71 -4.07 16 2 C 0.04 1.62 5.52 86.30 0.48 2.10 16 3 N -0.54 -23.76 4.36 -905.35 -3.95 -27.71 16 4 C 0.21 11.16 4.59 85.56 0.39 11.55 16 5 C -0.52 -29.64 8.62 25.60 0.22 -29.42 16 6 H 0.06 3.43 7.73 -2.91 -0.02 3.41 16 7 C 0.00 0.03 5.46 84.65 0.46 0.49 16 8 N -0.94 -56.93 13.29 21.45 0.28 -56.65 16 9 Si 0.97 44.78 29.54 68.60 2.03 46.80 16 10 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 11 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 12 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 13 C 0.11 4.22 4.94 85.56 0.42 4.64 16 14 C -0.11 -3.76 4.94 -19.85 -0.10 -3.85 16 15 C -0.07 -2.20 9.69 22.25 0.22 -1.99 16 16 C -0.21 -5.49 8.25 22.36 0.18 -5.30 16 17 C 0.12 3.14 6.60 22.51 0.15 3.29 16 18 O -0.32 -7.55 9.80 -92.44 -0.91 -8.45 16 19 C 0.07 1.11 2.85 30.60 0.09 1.20 16 20 C -0.14 -1.79 9.56 71.98 0.69 -1.10 16 21 C -0.18 -2.59 9.18 71.98 0.66 -1.93 16 22 C -0.16 -4.04 9.99 22.37 0.22 -3.82 16 23 C -0.08 -2.17 7.84 22.25 0.17 -1.99 16 24 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 25 H 0.03 1.29 6.78 -2.39 -0.02 1.27 16 26 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 27 H 0.02 0.65 8.05 -2.39 -0.02 0.63 16 28 H 0.09 2.84 5.10 -2.39 -0.01 2.83 16 29 H -0.04 -2.35 7.99 -2.39 -0.02 -2.37 16 30 H 0.01 0.71 6.37 -2.39 -0.02 0.70 16 31 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 32 H 0.07 2.85 7.35 -2.39 -0.02 2.83 16 33 H 0.03 1.09 8.06 -2.38 -0.02 1.07 16 34 H 0.12 3.84 8.06 -2.91 -0.02 3.81 16 35 H 0.14 3.14 5.46 -2.91 -0.02 3.12 16 36 H 0.07 1.26 6.26 -2.38 -0.01 1.25 16 37 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.05 0.91 6.97 -2.39 -0.02 0.89 16 41 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 43 H 0.14 3.07 8.06 -2.91 -0.02 3.05 16 44 H 0.14 3.40 7.71 -2.91 -0.02 3.37 16 Total: -1.00 -65.96 351.46 3.38 -62.58 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: 0.96 Total: 13.62 kcal Atomic # 6 Polarization: -35.16 SS G_CDS: 4.97 Total: -30.19 kcal Atomic # 7 Polarization: -80.69 SS G_CDS: -3.67 Total: -84.36 kcal Atomic # 8 Polarization: -7.55 SS G_CDS: -0.91 Total: -8.45 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.80 kcal Total: -65.96 3.38 -62.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081513729.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.355 kcal (2) G-P(sol) polarization free energy of solvation -65.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds