Wall clock time and date at job start Mon Mar 30 2020 02:14:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46891 * 1 3 3 C 1.46907 * 110.99986 * 2 1 4 4 C 1.50700 * 109.46974 * 293.95557 * 3 2 1 5 5 H 1.07994 * 120.00076 * 359.97438 * 4 3 2 6 6 C 1.37876 * 119.99573 * 179.97438 * 4 3 2 7 7 N 1.31510 * 120.00171 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 119.99823 * 179.97438 * 6 4 3 9 9 H 1.48503 * 109.47271 * 90.00153 * 8 6 4 10 10 H 1.48498 * 109.47429 * 209.99811 * 8 6 4 11 11 H 1.48501 * 109.47282 * 330.00388 * 8 6 4 12 12 C 1.46896 * 111.00254 * 123.95369 * 2 1 3 13 13 C 1.53004 * 109.47159 * 66.04822 * 12 2 1 14 14 C 1.52998 * 109.47523 * 180.02562 * 13 12 2 15 15 O 1.42893 * 109.47460 * 179.97438 * 14 13 12 16 16 C 1.42896 * 114.00368 * 180.02562 * 15 14 13 17 17 C 1.52995 * 109.47376 * 180.02562 * 16 15 14 18 18 C 1.50707 * 109.47301 * 179.97438 * 17 16 15 19 19 C 1.38238 * 119.99792 * 90.00016 * 18 17 16 20 20 C 1.38235 * 119.99712 * 179.97438 * 19 18 17 21 21 C 1.38234 * 120.00220 * 359.97124 * 20 19 18 22 22 C 1.38233 * 120.00037 * 0.28719 * 21 20 19 23 23 C 1.38234 * 120.00179 * 269.97953 * 18 17 16 24 24 H 1.09002 * 109.47325 * 296.04342 * 1 2 3 25 25 H 1.08999 * 109.47406 * 56.04239 * 1 2 3 26 26 H 1.09002 * 109.47095 * 176.04407 * 1 2 3 27 27 H 1.08999 * 109.46792 * 53.95653 * 3 2 1 28 28 H 1.08999 * 109.46824 * 173.95721 * 3 2 1 29 29 H 0.96999 * 120.00087 * 179.97438 * 7 6 4 30 30 H 1.08993 * 109.47261 * 306.04777 * 12 2 1 31 31 H 1.09004 * 109.47681 * 186.04455 * 12 2 1 32 32 H 1.08998 * 109.47484 * 59.99641 * 13 12 2 33 33 H 1.09001 * 109.46810 * 299.99905 * 13 12 2 34 34 H 1.09006 * 109.46948 * 59.99612 * 14 13 12 35 35 H 1.08998 * 109.47057 * 300.00511 * 14 13 12 36 36 H 1.08995 * 109.47430 * 59.99865 * 16 15 14 37 37 H 1.09004 * 109.46934 * 300.00059 * 16 15 14 38 38 H 1.09005 * 109.47610 * 60.00060 * 17 16 15 39 39 H 1.09000 * 109.47256 * 299.99402 * 17 16 15 40 40 H 1.08005 * 120.00068 * 359.97438 * 19 18 17 41 41 H 1.07999 * 119.99770 * 179.97438 * 20 19 18 42 42 H 1.08002 * 119.99744 * 180.02562 * 21 20 19 43 43 H 1.07998 * 120.00395 * 179.72811 * 22 21 20 44 44 H 1.07999 * 119.99968 * 359.97438 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0472 -1.2984 5 1 1.0745 1.5113 -2.0487 6 6 2.0267 3.3495 -1.5284 7 7 2.7118 4.0019 -0.6149 8 14 1.5828 4.1869 -3.1381 9 1 0.2702 4.8668 -2.9970 10 1 2.6249 5.1885 -3.4789 11 1 1.5005 3.1711 -4.2183 12 6 1.9954 -0.7659 1.1375 13 6 1.6315 -2.2426 0.9703 14 6 2.1792 -3.0404 2.1554 15 8 1.8389 -4.4194 1.9994 16 6 2.3056 -5.2567 3.0591 17 6 1.8868 -6.7031 2.7884 18 6 2.3796 -7.5863 3.9057 19 6 1.5838 -7.8071 5.0144 20 6 2.0356 -8.6177 6.0390 21 6 3.2828 -9.2079 5.9547 22 6 4.0807 -8.9828 4.8486 23 6 3.6270 -8.1760 3.8218 24 1 -0.3634 0.4512 0.9233 25 1 -0.3634 0.5740 -0.8524 26 1 -0.3633 -1.0252 -0.0709 27 1 1.5610 1.9273 0.8309 28 1 3.0796 1.3444 0.1082 29 1 2.9864 4.9180 -0.7769 30 1 1.5611 -0.3873 2.0627 31 1 3.0797 -0.6611 1.1756 32 1 2.0657 -2.6214 0.0451 33 1 0.5472 -2.3475 0.9323 34 1 1.7445 -2.6615 3.0804 35 1 3.2635 -2.9354 2.1939 36 1 1.8735 -4.9235 4.0027 37 1 3.3925 -5.1982 3.1165 38 1 2.3193 -7.0362 1.8449 39 1 0.7999 -6.7620 2.7308 40 1 0.6092 -7.3464 5.0800 41 1 1.4142 -8.7899 6.9053 42 1 3.6355 -9.8415 6.7551 43 1 5.0569 -9.4403 4.7847 44 1 4.2483 -8.0040 2.9553 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083219205.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:21 Heat of formation + Delta-G solvation = -34.929104 kcal Electronic energy + Delta-G solvation = -19974.555079 eV Core-core repulsion = 16891.255192 eV Total energy + Delta-G solvation = -3083.299887 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.67805 -38.15208 -36.72016 -33.92747 -32.79797 -31.42647 -31.22793 -28.77132 -27.12846 -26.02509 -23.95431 -23.45425 -22.91317 -21.45319 -20.98178 -19.95141 -17.21092 -16.58650 -16.45704 -16.20473 -15.45538 -15.31499 -15.11084 -14.69844 -14.43049 -13.86555 -13.75672 -13.46117 -13.41556 -13.12619 -12.94491 -12.41159 -11.92404 -11.74856 -11.64992 -11.51476 -11.28930 -11.22895 -11.14054 -10.88076 -10.84209 -10.58969 -10.47442 -10.26739 -9.78759 -9.60139 -9.25938 -9.18375 -9.05339 -8.42446 -7.21859 -6.01185 -4.02339 0.98695 1.05907 3.33107 3.33901 3.39135 3.44053 3.64926 4.44133 4.49377 4.56727 4.68631 4.80428 4.84421 4.92911 5.13254 5.16421 5.18669 5.22345 5.23042 5.34382 5.42072 5.55665 5.56532 5.62083 5.73245 5.75926 5.82026 5.88795 6.08970 6.12531 6.17501 6.21612 6.30597 6.34548 6.51271 6.57672 6.66391 6.80081 7.18441 7.31513 7.36345 7.82335 8.10782 8.22427 8.57509 9.05489 9.61737 11.09800 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.055162 B = 0.001988 C = 0.001975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.472193 B =14078.916695 C =14171.897149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.541 5.541 3 C 0.192 3.808 4 C -0.507 4.507 5 H 0.064 0.936 6 C 0.053 3.947 7 N -0.900 5.900 8 Si 0.899 3.101 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.273 1.273 12 C 0.059 3.941 13 C -0.113 4.113 14 C 0.066 3.934 15 O -0.389 6.389 16 C 0.069 3.931 17 C -0.080 4.080 18 C -0.080 4.080 19 C -0.115 4.115 20 C -0.120 4.120 21 C -0.125 4.125 22 C -0.119 4.119 23 C -0.115 4.115 24 H 0.009 0.991 25 H 0.074 0.926 26 H 0.047 0.953 27 H -0.010 1.010 28 H 0.030 0.970 29 H 0.261 0.739 30 H 0.022 0.978 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.067 0.933 34 H 0.045 0.955 35 H 0.049 0.951 36 H 0.048 0.952 37 H 0.048 0.952 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.123 0.877 41 H 0.122 0.878 42 H 0.120 0.880 43 H 0.122 0.878 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.007 -25.131 12.990 28.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.265 5.265 3 C 0.067 3.933 4 C -0.545 4.545 5 H 0.082 0.918 6 C -0.148 4.148 7 N -0.539 5.539 8 Si 0.727 3.273 9 H -0.208 1.208 10 H -0.213 1.213 11 H -0.197 1.197 12 C -0.070 4.070 13 C -0.151 4.151 14 C -0.011 4.011 15 O -0.308 6.308 16 C -0.008 4.008 17 C -0.118 4.118 18 C -0.080 4.080 19 C -0.133 4.133 20 C -0.138 4.138 21 C -0.143 4.143 22 C -0.137 4.137 23 C -0.133 4.133 24 H 0.028 0.972 25 H 0.092 0.908 26 H 0.066 0.934 27 H 0.008 0.992 28 H 0.048 0.952 29 H 0.070 0.930 30 H 0.040 0.960 31 H 0.086 0.914 32 H 0.095 0.905 33 H 0.086 0.914 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.100 0.900 39 H 0.100 0.900 40 H 0.141 0.859 41 H 0.140 0.860 42 H 0.138 0.862 43 H 0.140 0.860 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 0.139 -25.236 12.427 28.130 hybrid contribution -0.238 1.084 0.295 1.149 sum -0.099 -24.151 12.722 27.297 Atomic orbital electron populations 1.22258 0.88968 0.99645 1.00451 1.62067 1.06998 1.17780 1.39706 1.19744 0.95374 0.81556 0.96637 1.21180 1.34739 0.96889 1.01724 0.91799 1.25003 0.95324 0.97370 0.97054 1.69960 1.38428 1.11410 1.34141 0.86483 0.77951 0.79192 0.83705 1.20764 1.21267 1.19747 1.21918 1.00087 0.92204 0.92800 1.21527 1.01673 0.94294 0.97582 1.22521 0.98970 0.80730 0.98907 1.87851 1.78678 1.18438 1.45875 1.22379 0.98181 0.89912 0.90327 1.20489 1.02271 0.92150 0.96855 1.19785 0.94649 0.97923 0.95686 1.21123 0.99919 0.98704 0.93567 1.21166 0.96336 0.97504 0.98747 1.21176 0.94716 1.00164 0.98251 1.21171 0.99804 0.98664 0.94084 1.21130 0.95574 0.97440 0.99130 0.97201 0.90766 0.93382 0.99170 0.95235 0.92953 0.96029 0.91373 0.90471 0.91393 0.93632 0.93297 0.93414 0.93328 0.89976 0.90039 0.85915 0.86040 0.86162 0.86016 0.85866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.71 9.14 60.06 0.55 1.26 16 2 N -0.54 -12.06 4.75 -244.37 -1.16 -13.22 16 3 C 0.19 5.12 4.72 -4.97 -0.02 5.10 16 4 C -0.51 -14.49 8.46 -34.44 -0.29 -14.79 16 5 H 0.06 1.81 7.12 -52.49 -0.37 1.43 16 6 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 7 N -0.90 -27.03 13.29 55.43 0.74 -26.29 16 8 Si 0.90 21.86 29.54 -169.99 -5.02 16.84 16 9 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 10 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 12 C 0.06 1.07 4.96 -3.82 -0.02 1.06 16 13 C -0.11 -1.74 5.51 -26.73 -0.15 -1.88 16 14 C 0.07 0.86 5.94 37.16 0.22 1.08 16 15 O -0.39 -5.14 10.34 -35.23 -0.36 -5.51 16 16 C 0.07 0.71 5.92 37.15 0.22 0.93 16 17 C -0.08 -0.72 5.71 -27.88 -0.16 -0.88 16 18 C -0.08 -0.69 5.13 -104.62 -0.54 -1.23 16 19 C -0.12 -0.93 9.70 -39.58 -0.38 -1.31 16 20 C -0.12 -0.88 10.05 -39.58 -0.40 -1.27 16 21 C -0.13 -0.89 10.05 -39.58 -0.40 -1.29 16 22 C -0.12 -0.88 10.05 -39.58 -0.40 -1.28 16 23 C -0.11 -0.93 9.70 -39.58 -0.38 -1.32 16 24 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 25 H 0.07 1.58 6.76 -51.93 -0.35 1.23 16 26 H 0.05 0.83 6.47 -51.93 -0.34 0.49 16 27 H -0.01 -0.27 8.12 -51.93 -0.42 -0.69 16 28 H 0.03 0.83 7.93 -51.93 -0.41 0.42 16 29 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 30 H 0.02 0.39 8.12 -51.93 -0.42 -0.03 16 31 H 0.07 1.24 7.93 -51.93 -0.41 0.83 16 32 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.07 1.05 6.55 -51.93 -0.34 0.71 16 34 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.08 0.72 8.09 -51.93 -0.42 0.30 16 39 H 0.08 0.71 8.09 -51.93 -0.42 0.29 16 40 H 0.12 0.84 8.06 -52.48 -0.42 0.42 16 41 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 42 H 0.12 0.61 8.06 -52.49 -0.42 0.19 16 43 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 44 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 LS Contribution 362.37 15.07 5.46 5.46 Total: -1.00 -31.21 362.37 -10.29 -41.50 By element: Atomic # 1 Polarization: 3.28 SS G_CDS: -7.69 Total: -4.41 kcal Atomic # 6 Polarization: -12.13 SS G_CDS: -2.25 Total: -14.38 kcal Atomic # 7 Polarization: -39.08 SS G_CDS: -0.43 Total: -39.51 kcal Atomic # 8 Polarization: -5.14 SS G_CDS: -0.36 Total: -5.51 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.21 -10.29 -41.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083219205.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.575 kcal (2) G-P(sol) polarization free energy of solvation -31.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds