Wall clock time and date at job start Mon Mar 30 2020 02:14:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46891 * 1 3 3 C 1.46907 * 110.99986 * 2 1 4 4 C 1.50700 * 109.46974 * 293.95557 * 3 2 1 5 5 H 1.07994 * 120.00076 * 359.97438 * 4 3 2 6 6 C 1.37876 * 119.99573 * 179.97438 * 4 3 2 7 7 N 1.31510 * 120.00171 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 119.99823 * 179.97438 * 6 4 3 9 9 H 1.48503 * 109.47271 * 90.00153 * 8 6 4 10 10 H 1.48498 * 109.47429 * 209.99811 * 8 6 4 11 11 H 1.48501 * 109.47282 * 330.00388 * 8 6 4 12 12 C 1.46896 * 111.00254 * 123.95369 * 2 1 3 13 13 C 1.53004 * 109.47159 * 66.04822 * 12 2 1 14 14 C 1.52998 * 109.47523 * 180.02562 * 13 12 2 15 15 O 1.42893 * 109.47460 * 179.97438 * 14 13 12 16 16 C 1.42896 * 114.00368 * 180.02562 * 15 14 13 17 17 C 1.52995 * 109.47376 * 180.02562 * 16 15 14 18 18 C 1.50707 * 109.47301 * 179.97438 * 17 16 15 19 19 C 1.38238 * 119.99792 * 90.00016 * 18 17 16 20 20 C 1.38235 * 119.99712 * 179.97438 * 19 18 17 21 21 C 1.38234 * 120.00220 * 359.97124 * 20 19 18 22 22 C 1.38233 * 120.00037 * 0.28719 * 21 20 19 23 23 C 1.38234 * 120.00179 * 269.97953 * 18 17 16 24 24 H 1.09002 * 109.47325 * 296.04342 * 1 2 3 25 25 H 1.08999 * 109.47406 * 56.04239 * 1 2 3 26 26 H 1.09002 * 109.47095 * 176.04407 * 1 2 3 27 27 H 1.08999 * 109.46792 * 53.95653 * 3 2 1 28 28 H 1.08999 * 109.46824 * 173.95721 * 3 2 1 29 29 H 0.96999 * 120.00087 * 179.97438 * 7 6 4 30 30 H 1.08993 * 109.47261 * 306.04777 * 12 2 1 31 31 H 1.09004 * 109.47681 * 186.04455 * 12 2 1 32 32 H 1.08998 * 109.47484 * 59.99641 * 13 12 2 33 33 H 1.09001 * 109.46810 * 299.99905 * 13 12 2 34 34 H 1.09006 * 109.46948 * 59.99612 * 14 13 12 35 35 H 1.08998 * 109.47057 * 300.00511 * 14 13 12 36 36 H 1.08995 * 109.47430 * 59.99865 * 16 15 14 37 37 H 1.09004 * 109.46934 * 300.00059 * 16 15 14 38 38 H 1.09005 * 109.47610 * 60.00060 * 17 16 15 39 39 H 1.09000 * 109.47256 * 299.99402 * 17 16 15 40 40 H 1.08005 * 120.00068 * 359.97438 * 19 18 17 41 41 H 1.07999 * 119.99770 * 179.97438 * 20 19 18 42 42 H 1.08002 * 119.99744 * 180.02562 * 21 20 19 43 43 H 1.07998 * 120.00395 * 179.72811 * 22 21 20 44 44 H 1.07999 * 119.99968 * 359.97438 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0472 -1.2984 5 1 1.0745 1.5113 -2.0487 6 6 2.0267 3.3495 -1.5284 7 7 2.7118 4.0019 -0.6149 8 14 1.5828 4.1869 -3.1381 9 1 0.2702 4.8668 -2.9970 10 1 2.6249 5.1885 -3.4789 11 1 1.5005 3.1711 -4.2183 12 6 1.9954 -0.7659 1.1375 13 6 1.6315 -2.2426 0.9703 14 6 2.1792 -3.0404 2.1554 15 8 1.8389 -4.4194 1.9994 16 6 2.3056 -5.2567 3.0591 17 6 1.8868 -6.7031 2.7884 18 6 2.3796 -7.5863 3.9057 19 6 1.5838 -7.8071 5.0144 20 6 2.0356 -8.6177 6.0390 21 6 3.2828 -9.2079 5.9547 22 6 4.0807 -8.9828 4.8486 23 6 3.6270 -8.1760 3.8218 24 1 -0.3634 0.4512 0.9233 25 1 -0.3634 0.5740 -0.8524 26 1 -0.3633 -1.0252 -0.0709 27 1 1.5610 1.9273 0.8309 28 1 3.0796 1.3444 0.1082 29 1 2.9864 4.9180 -0.7769 30 1 1.5611 -0.3873 2.0627 31 1 3.0797 -0.6611 1.1756 32 1 2.0657 -2.6214 0.0451 33 1 0.5472 -2.3475 0.9323 34 1 1.7445 -2.6615 3.0804 35 1 3.2635 -2.9354 2.1939 36 1 1.8735 -4.9235 4.0027 37 1 3.3925 -5.1982 3.1165 38 1 2.3193 -7.0362 1.8449 39 1 0.7999 -6.7620 2.7308 40 1 0.6092 -7.3464 5.0800 41 1 1.4142 -8.7899 6.9053 42 1 3.6355 -9.8415 6.7551 43 1 5.0569 -9.4403 4.7847 44 1 4.2483 -8.0040 2.9553 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083219205.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:20 Heat of formation + Delta-G solvation = -52.569147 kcal Electronic energy + Delta-G solvation = -19975.320009 eV Core-core repulsion = 16891.255192 eV Total energy + Delta-G solvation = -3084.064816 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.26851 -39.22011 -38.29486 -35.06252 -34.45402 -32.84382 -31.76896 -29.64773 -29.02280 -27.54642 -25.48945 -24.34748 -23.46061 -22.89539 -21.86258 -21.47192 -18.51981 -17.87446 -17.41790 -17.29848 -16.82207 -16.37287 -16.13242 -15.89742 -15.78439 -15.14878 -15.00393 -14.80530 -14.25249 -13.96694 -13.84431 -13.68294 -13.62054 -13.12365 -13.00750 -12.70557 -12.66933 -12.43609 -12.38184 -12.26761 -12.01135 -11.98661 -11.84204 -11.79034 -11.50518 -11.25473 -10.62357 -10.56593 -9.81894 -9.63989 -9.03807 -8.20979 -6.31266 0.41220 0.50141 1.41483 1.43111 1.55020 2.39495 2.53354 2.92398 3.11396 3.42656 3.89473 3.94387 3.99098 4.14095 4.19040 4.19339 4.27280 4.31510 4.40300 4.44965 4.47190 4.58863 4.59123 4.62727 4.65032 4.68665 4.77964 4.93511 4.96842 5.06042 5.14486 5.17345 5.18753 5.18955 5.27711 5.34353 5.57857 5.63428 5.65103 5.71468 6.04196 6.12533 6.23471 6.31616 6.63126 6.84840 7.38440 8.90218 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.055162 B = 0.001988 C = 0.001975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.472193 B =14078.916695 C =14171.897149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.552 5.552 3 C 0.206 3.794 4 C -0.526 4.526 5 H 0.064 0.936 6 C -0.001 4.001 7 N -0.935 5.935 8 Si 0.972 3.028 9 H -0.272 1.272 10 H -0.281 1.281 11 H -0.265 1.265 12 C 0.059 3.941 13 C -0.100 4.100 14 C 0.071 3.929 15 O -0.405 6.405 16 C 0.067 3.933 17 C -0.074 4.074 18 C -0.093 4.093 19 C -0.127 4.127 20 C -0.127 4.127 21 C -0.131 4.131 22 C -0.127 4.127 23 C -0.128 4.128 24 H 0.011 0.989 25 H 0.057 0.943 26 H 0.080 0.920 27 H -0.037 1.037 28 H 0.005 0.995 29 H 0.265 0.735 30 H 0.027 0.973 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.054 0.946 37 H 0.052 0.948 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.131 0.869 41 H 0.140 0.860 42 H 0.141 0.859 43 H 0.139 0.861 44 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.451 -26.356 13.064 29.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 N -0.277 5.277 3 C 0.080 3.920 4 C -0.564 4.564 5 H 0.082 0.918 6 C -0.199 4.199 7 N -0.575 5.575 8 Si 0.797 3.203 9 H -0.197 1.197 10 H -0.207 1.207 11 H -0.189 1.189 12 C -0.069 4.069 13 C -0.138 4.138 14 C -0.006 4.006 15 O -0.325 6.325 16 C -0.009 4.009 17 C -0.111 4.111 18 C -0.093 4.093 19 C -0.145 4.145 20 C -0.145 4.145 21 C -0.149 4.149 22 C -0.145 4.145 23 C -0.146 4.146 24 H 0.029 0.971 25 H 0.076 0.924 26 H 0.099 0.901 27 H -0.019 1.019 28 H 0.023 0.977 29 H 0.074 0.926 30 H 0.045 0.955 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.099 0.901 39 H 0.100 0.900 40 H 0.148 0.852 41 H 0.157 0.843 42 H 0.158 0.842 43 H 0.157 0.843 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -0.313 -26.489 12.511 29.296 hybrid contribution -0.082 1.385 0.354 1.431 sum -0.395 -25.104 12.864 28.211 Atomic orbital electron populations 1.22259 0.87520 1.01413 0.99764 1.61988 1.08409 1.15311 1.41951 1.19410 0.93728 0.83784 0.95113 1.21491 1.34971 0.97557 1.02397 0.91816 1.25953 0.94978 0.98058 1.00869 1.70085 1.39286 1.11885 1.36270 0.85338 0.77966 0.78042 0.78995 1.19733 1.20673 1.18932 1.21965 0.99776 0.93560 0.91600 1.21338 1.01806 0.92312 0.98334 1.22388 0.99320 0.80836 0.98082 1.87812 1.79046 1.18419 1.47182 1.22518 0.98451 0.90144 0.89795 1.20417 1.02245 0.91387 0.97064 1.19818 0.95170 0.98469 0.95890 1.21324 1.00360 0.99120 0.93728 1.21458 0.96784 0.97128 0.99142 1.21505 0.94598 1.00088 0.98689 1.21456 1.00686 0.98453 0.93937 1.21324 0.95667 0.97805 0.99799 0.97072 0.92407 0.90130 1.01931 0.97736 0.92648 0.95503 0.91789 0.91344 0.91099 0.92527 0.92620 0.92820 0.92955 0.90141 0.90024 0.85150 0.84254 0.84154 0.84308 0.85250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.52 9.14 127.69 1.17 2.69 16 2 N -0.55 -24.69 4.75 -927.06 -4.41 -29.10 16 3 C 0.21 11.29 4.72 85.56 0.40 11.69 16 4 C -0.53 -30.46 8.46 25.60 0.22 -30.24 16 5 H 0.06 3.61 7.12 -2.91 -0.02 3.59 16 6 C 0.00 -0.04 5.46 84.66 0.46 0.42 16 7 N -0.93 -56.92 13.29 21.45 0.28 -56.64 16 8 Si 0.97 44.77 29.54 68.60 2.03 46.79 16 9 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 10 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 11 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 12 C 0.06 2.15 4.96 86.31 0.43 2.57 16 13 C -0.10 -2.95 5.51 30.59 0.17 -2.79 16 14 C 0.07 1.75 5.94 71.98 0.43 2.18 16 15 O -0.40 -10.14 10.34 -148.98 -1.54 -11.68 16 16 C 0.07 1.31 5.92 71.98 0.43 1.73 16 17 C -0.07 -1.26 5.71 29.85 0.17 -1.09 16 18 C -0.09 -1.53 5.13 -19.86 -0.10 -1.63 16 19 C -0.13 -1.92 9.70 22.27 0.22 -1.70 16 20 C -0.13 -1.67 10.05 22.27 0.22 -1.44 16 21 C -0.13 -1.63 10.05 22.27 0.22 -1.40 16 22 C -0.13 -1.69 10.05 22.27 0.22 -1.47 16 23 C -0.13 -1.96 9.70 22.27 0.22 -1.75 16 24 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 25 H 0.06 2.45 6.76 -2.39 -0.02 2.44 16 26 H 0.08 2.64 6.47 -2.39 -0.02 2.62 16 27 H -0.04 -2.18 8.12 -2.39 -0.02 -2.20 16 28 H 0.00 0.27 7.93 -2.39 -0.02 0.25 16 29 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 30 H 0.03 0.95 8.12 -2.39 -0.02 0.93 16 31 H 0.06 2.34 7.93 -2.38 -0.02 2.32 16 32 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 33 H 0.07 2.05 6.55 -2.39 -0.02 2.03 16 34 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 35 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.05 0.97 8.14 -2.38 -0.02 0.95 16 38 H 0.08 1.37 8.09 -2.38 -0.02 1.35 16 39 H 0.08 1.36 8.09 -2.39 -0.02 1.34 16 40 H 0.13 1.65 8.06 -2.91 -0.02 1.62 16 41 H 0.14 1.22 8.06 -2.91 -0.02 1.20 16 42 H 0.14 1.09 8.06 -2.91 -0.02 1.07 16 43 H 0.14 1.26 8.06 -2.91 -0.02 1.24 16 44 H 0.13 1.70 8.06 -2.91 -0.02 1.68 16 Total: -1.00 -66.55 362.37 2.17 -64.38 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: 0.93 Total: 8.47 kcal Atomic # 6 Polarization: -27.10 SS G_CDS: 4.87 Total: -22.22 kcal Atomic # 7 Polarization: -81.62 SS G_CDS: -4.12 Total: -85.74 kcal Atomic # 8 Polarization: -10.14 SS G_CDS: -1.54 Total: -11.68 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.79 kcal Total: -66.55 2.17 -64.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083219205.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.813 kcal (2) G-P(sol) polarization free energy of solvation -66.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds