Wall clock time and date at job start Mon Mar 30 2020 02:43:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47431 * 2 1 4 4 C 1.50700 * 109.47408 * 119.99863 * 2 1 3 5 5 C 1.38118 * 120.40034 * 275.00233 * 4 2 1 6 6 C 1.39627 * 118.33215 * 180.02562 * 5 4 2 7 7 N 1.38545 * 120.53024 * 179.97438 * 6 5 4 8 8 C 1.46498 * 120.00043 * 5.00091 * 7 6 5 9 9 C 1.46503 * 119.99733 * 184.99900 * 7 6 5 10 10 C 1.50699 * 109.46673 * 90.00031 * 9 7 6 11 11 H 1.07991 * 120.00645 * 0.02562 * 10 9 7 12 12 C 1.37884 * 119.99442 * 179.97438 * 10 9 7 13 13 N 1.31512 * 120.00193 * 0.02562 * 12 10 9 14 14 Si 1.86805 * 119.99596 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.47040 * 90.00257 * 14 12 10 16 16 H 1.48500 * 109.46908 * 209.99848 * 14 12 10 17 17 H 1.48497 * 109.47162 * 330.00231 * 14 12 10 18 18 N 1.32996 * 118.93706 * 0.25123 * 6 5 4 19 19 C 1.31753 * 120.68606 * 359.48596 * 18 6 5 20 20 C 1.50701 * 119.08222 * 180.26031 * 19 18 6 21 21 C 1.52995 * 109.47517 * 300.26238 * 20 19 18 22 22 C 1.53000 * 109.46781 * 60.26282 * 20 19 18 23 23 N 1.31788 * 121.82813 * 0.53073 * 19 18 6 24 24 H 1.08998 * 109.46941 * 300.00302 * 1 2 3 25 25 H 1.09002 * 109.46809 * 60.00133 * 1 2 3 26 26 H 1.08999 * 109.46643 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47390 * 239.99888 * 2 1 3 28 28 H 1.08991 * 109.47466 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.46710 * 300.00194 * 3 2 1 30 30 H 1.09001 * 109.46925 * 59.99603 * 3 2 1 31 31 H 1.07991 * 120.83555 * 0.03994 * 5 4 2 32 32 H 1.09001 * 109.47306 * 89.99693 * 8 7 6 33 33 H 1.08998 * 109.47019 * 210.00538 * 8 7 6 34 34 H 1.09000 * 109.47194 * 329.99911 * 8 7 6 35 35 H 1.09005 * 109.46767 * 209.99926 * 9 7 6 36 36 H 1.08996 * 109.47165 * 329.99754 * 9 7 6 37 37 H 0.96997 * 120.00024 * 179.97438 * 13 12 10 38 38 H 1.08999 * 109.46912 * 180.25719 * 20 19 18 39 39 H 1.08998 * 109.47189 * 59.99337 * 21 20 19 40 40 H 1.08998 * 109.47443 * 180.02562 * 21 20 19 41 41 H 1.09005 * 109.46773 * 300.00106 * 21 20 19 42 42 H 1.08995 * 109.47812 * 59.99400 * 22 20 19 43 43 H 1.08998 * 109.47162 * 179.97438 * 22 20 19 44 44 H 1.09009 * 109.46900 * 299.99496 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 6 2.1675 -0.0294 2.4245 6 6 2.6373 -0.7297 3.5373 7 7 2.7907 -0.0914 4.7573 8 6 2.3568 1.2988 4.9164 9 6 3.3869 -0.8067 5.8883 10 6 4.8802 -0.6042 5.8798 11 1 5.3392 -0.0027 5.1093 12 6 5.6603 -1.1863 6.8564 13 7 5.1013 -1.9185 7.7950 14 14 7.5115 -0.9360 6.8454 15 1 7.8526 0.2704 7.6414 16 1 8.1752 -2.1245 7.4389 17 1 7.9782 -0.7548 5.4474 18 7 2.9405 -2.0180 3.4059 19 6 2.7914 -2.6292 2.2483 20 6 3.1405 -4.0913 2.1416 21 6 4.6148 -4.2911 2.4980 22 6 2.2686 -4.8955 3.1081 23 7 2.3505 -1.9961 1.1798 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.9158 1.0184 2.4957 32 1 1.3169 1.3198 5.2424 33 1 2.9813 1.7913 5.6616 34 1 2.4493 1.8196 3.9633 35 1 2.9733 -0.4216 6.8205 36 1 3.1639 -1.8702 5.8039 37 1 5.6502 -2.3283 8.4818 38 1 2.9635 -4.4336 1.1220 39 1 4.7918 -3.9487 3.5176 40 1 4.8674 -5.3485 2.4204 41 1 5.2359 -3.7181 1.8094 42 1 1.2182 -4.7532 2.8543 43 1 2.5207 -5.9531 3.0307 44 1 2.4457 -4.5532 4.1278 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000090065173.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:16 Heat of formation + Delta-G solvation = 30.761016 kcal Electronic energy + Delta-G solvation = -22342.667422 eV Core-core repulsion = 19294.508824 eV Total energy + Delta-G solvation = -3048.158598 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.52423 -36.69586 -36.31622 -34.06999 -32.72209 -31.64500 -29.77667 -27.82127 -27.19142 -26.73421 -25.66385 -24.41994 -23.11221 -22.06059 -20.06312 -19.17488 -17.12936 -16.58705 -16.38664 -14.91929 -14.80973 -14.62223 -14.31817 -14.09321 -14.00947 -13.66665 -13.58402 -13.17586 -13.02301 -12.34236 -12.16546 -12.13373 -11.86485 -11.68510 -11.52644 -11.29519 -11.23651 -11.10608 -10.93993 -10.86328 -10.79350 -10.61232 -10.46831 -10.30361 -10.12661 -9.75654 -9.46314 -8.90893 -8.46571 -8.33944 -7.05372 -6.04636 -4.10812 1.68869 2.11176 3.27365 3.34383 3.38543 3.72732 4.33037 4.40638 4.49360 4.71337 4.99237 5.17543 5.20921 5.27423 5.43289 5.45763 5.55212 5.57344 5.59038 5.68627 5.73200 5.81580 5.85491 5.90384 5.92215 6.02898 6.08695 6.13208 6.19053 6.23613 6.25479 6.31289 6.34800 6.41840 6.67122 6.78786 6.88294 7.11635 7.43694 7.65201 7.84837 8.15023 8.22034 8.27787 8.91664 9.09250 9.53584 11.01285 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.015358 B = 0.006041 C = 0.005001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.668145 B = 4634.230820 C = 5597.889500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.043 4.043 3 C -0.144 4.144 4 C 0.201 3.799 5 C -0.315 4.315 6 C 0.450 3.550 7 N -0.580 5.580 8 C 0.096 3.904 9 C 0.251 3.749 10 C -0.523 4.523 11 H 0.054 0.946 12 C 0.064 3.936 13 N -0.893 5.893 14 Si 0.894 3.106 15 H -0.281 1.281 16 H -0.285 1.285 17 H -0.275 1.275 18 N -0.550 5.550 19 C 0.362 3.638 20 C -0.020 4.020 21 C -0.141 4.141 22 C -0.138 4.138 23 N -0.580 5.580 24 H 0.055 0.945 25 H 0.059 0.941 26 H 0.057 0.943 27 H 0.087 0.913 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.133 0.867 32 H 0.044 0.956 33 H 0.076 0.924 34 H 0.058 0.942 35 H 0.029 0.971 36 H 0.052 0.948 37 H 0.263 0.737 38 H 0.086 0.914 39 H 0.076 0.924 40 H 0.057 0.943 41 H 0.048 0.952 42 H 0.047 0.953 43 H 0.058 0.942 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.689 2.439 -12.398 14.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.062 4.062 3 C -0.202 4.202 4 C 0.059 3.941 5 C -0.344 4.344 6 C 0.205 3.795 7 N -0.288 5.288 8 C -0.048 4.048 9 C 0.132 3.868 10 C -0.562 4.562 11 H 0.072 0.928 12 C -0.138 4.138 13 N -0.532 5.532 14 Si 0.722 3.278 15 H -0.207 1.207 16 H -0.210 1.210 17 H -0.200 1.200 18 N -0.273 5.273 19 C 0.092 3.908 20 C -0.040 4.040 21 C -0.199 4.199 22 C -0.196 4.196 23 N -0.301 5.301 24 H 0.074 0.926 25 H 0.078 0.922 26 H 0.076 0.924 27 H 0.105 0.895 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.151 0.849 32 H 0.063 0.937 33 H 0.095 0.905 34 H 0.077 0.923 35 H 0.046 0.954 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.104 0.896 39 H 0.095 0.905 40 H 0.076 0.924 41 H 0.068 0.932 42 H 0.067 0.933 43 H 0.077 0.923 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -7.387 1.543 -12.027 14.198 hybrid contribution 0.949 1.150 0.276 1.516 sum -6.439 2.693 -11.751 13.667 Atomic orbital electron populations 1.21756 0.93801 1.02192 1.01777 1.19982 0.95990 0.95246 0.95017 1.21878 1.01425 0.94986 1.01911 1.21016 0.90073 0.89567 0.93485 1.21856 1.16142 1.02202 0.94192 1.18553 0.86423 0.88220 0.86258 1.47031 1.60814 1.11677 1.09278 1.21620 0.98963 0.82428 1.01786 1.19367 0.92478 0.93541 0.81455 1.21408 0.91943 1.31532 1.11346 0.92772 1.24886 0.98627 0.94957 0.95331 1.69926 1.35663 1.32973 1.14670 0.86558 0.85406 0.77654 0.78174 1.20700 1.21025 1.20018 1.67808 1.23787 1.08821 1.26920 1.22688 0.88551 0.96258 0.83309 1.19828 0.96674 0.86960 1.00551 1.21780 0.93619 1.00897 1.03571 1.21763 0.98477 0.98874 1.00528 1.67958 1.20354 1.09528 1.32257 0.92554 0.92171 0.92372 0.89457 0.92422 0.92186 0.92177 0.84949 0.93747 0.90503 0.92323 0.95353 0.92973 0.92743 0.89561 0.90475 0.92442 0.93249 0.93343 0.92315 0.90970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 9.18 37.16 0.34 -1.16 16 2 C -0.04 -0.55 3.27 -91.77 -0.30 -0.85 16 3 C -0.14 -1.56 8.64 37.16 0.32 -1.24 16 4 C 0.20 3.40 5.82 -82.33 -0.48 2.92 16 5 C -0.31 -5.60 8.41 -39.11 -0.33 -5.93 16 6 C 0.45 9.58 7.39 -154.77 -1.14 8.44 16 7 N -0.58 -12.54 2.96 -182.92 -0.54 -13.08 16 8 C 0.10 1.60 10.31 59.85 0.62 2.22 16 9 C 0.25 6.44 5.23 -5.19 -0.03 6.41 16 10 C -0.52 -14.56 9.39 -34.44 -0.32 -14.89 16 11 H 0.05 1.54 7.81 -52.49 -0.41 1.13 16 12 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 13 N -0.89 -25.97 13.29 55.43 0.74 -25.24 16 14 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 15 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 16 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 17 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 18 N -0.55 -12.20 8.60 -9.96 -0.09 -12.28 16 19 C 0.36 7.13 6.34 -157.24 -1.00 6.13 16 20 C -0.02 -0.33 3.25 -91.77 -0.30 -0.62 16 21 C -0.14 -2.33 9.08 37.16 0.34 -1.99 16 22 C -0.14 -2.12 9.09 37.16 0.34 -1.78 16 23 N -0.58 -10.83 10.24 -7.07 -0.07 -10.90 16 24 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.63 6.58 -51.93 -0.34 0.29 16 31 H 0.13 2.02 4.53 -52.49 -0.24 1.78 16 32 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.08 1.29 8.07 -51.93 -0.42 0.87 16 34 H 0.06 0.84 6.05 -51.93 -0.31 0.53 16 35 H 0.03 0.75 8.07 -51.93 -0.42 0.33 16 36 H 0.05 1.47 7.34 -51.93 -0.38 1.09 16 37 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 38 H 0.09 1.29 8.09 -51.93 -0.42 0.87 16 39 H 0.08 1.52 8.01 -51.93 -0.42 1.10 16 40 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 42 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 44 H 0.07 1.28 8.02 -51.92 -0.42 0.87 16 LS Contribution 357.22 15.07 5.38 5.38 Total: -1.00 -30.94 357.22 -9.20 -40.14 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -7.56 Total: -0.05 kcal Atomic # 6 Polarization: 1.41 SS G_CDS: -2.04 Total: -0.63 kcal Atomic # 7 Polarization: -61.54 SS G_CDS: 0.04 Total: -61.50 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.94 -9.20 -40.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090065173.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.903 kcal (2) G-P(sol) polarization free energy of solvation -30.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.142 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds