Wall clock time and date at job start Mon Mar 30 2020 02:43:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47431 * 2 1 4 4 C 1.50700 * 109.47408 * 119.99863 * 2 1 3 5 5 C 1.38118 * 120.40034 * 275.00233 * 4 2 1 6 6 C 1.39627 * 118.33215 * 180.02562 * 5 4 2 7 7 N 1.38545 * 120.53024 * 179.97438 * 6 5 4 8 8 C 1.46498 * 120.00043 * 5.00091 * 7 6 5 9 9 C 1.46503 * 119.99733 * 184.99900 * 7 6 5 10 10 C 1.50699 * 109.46673 * 90.00031 * 9 7 6 11 11 H 1.07991 * 120.00645 * 0.02562 * 10 9 7 12 12 C 1.37884 * 119.99442 * 179.97438 * 10 9 7 13 13 N 1.31512 * 120.00193 * 0.02562 * 12 10 9 14 14 Si 1.86805 * 119.99596 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.47040 * 90.00257 * 14 12 10 16 16 H 1.48500 * 109.46908 * 209.99848 * 14 12 10 17 17 H 1.48497 * 109.47162 * 330.00231 * 14 12 10 18 18 N 1.32996 * 118.93706 * 0.25123 * 6 5 4 19 19 C 1.31753 * 120.68606 * 359.48596 * 18 6 5 20 20 C 1.50701 * 119.08222 * 180.26031 * 19 18 6 21 21 C 1.52995 * 109.47517 * 300.26238 * 20 19 18 22 22 C 1.53000 * 109.46781 * 60.26282 * 20 19 18 23 23 N 1.31788 * 121.82813 * 0.53073 * 19 18 6 24 24 H 1.08998 * 109.46941 * 300.00302 * 1 2 3 25 25 H 1.09002 * 109.46809 * 60.00133 * 1 2 3 26 26 H 1.08999 * 109.46643 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47390 * 239.99888 * 2 1 3 28 28 H 1.08991 * 109.47466 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.46710 * 300.00194 * 3 2 1 30 30 H 1.09001 * 109.46925 * 59.99603 * 3 2 1 31 31 H 1.07991 * 120.83555 * 0.03994 * 5 4 2 32 32 H 1.09001 * 109.47306 * 89.99693 * 8 7 6 33 33 H 1.08998 * 109.47019 * 210.00538 * 8 7 6 34 34 H 1.09000 * 109.47194 * 329.99911 * 8 7 6 35 35 H 1.09005 * 109.46767 * 209.99926 * 9 7 6 36 36 H 1.08996 * 109.47165 * 329.99754 * 9 7 6 37 37 H 0.96997 * 120.00024 * 179.97438 * 13 12 10 38 38 H 1.08999 * 109.46912 * 180.25719 * 20 19 18 39 39 H 1.08998 * 109.47189 * 59.99337 * 21 20 19 40 40 H 1.08998 * 109.47443 * 180.02562 * 21 20 19 41 41 H 1.09005 * 109.46773 * 300.00106 * 21 20 19 42 42 H 1.08995 * 109.47812 * 59.99400 * 22 20 19 43 43 H 1.08998 * 109.47162 * 179.97438 * 22 20 19 44 44 H 1.09009 * 109.46900 * 299.99496 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 6 2.1675 -0.0294 2.4245 6 6 2.6373 -0.7297 3.5373 7 7 2.7907 -0.0914 4.7573 8 6 2.3568 1.2988 4.9164 9 6 3.3869 -0.8067 5.8883 10 6 4.8802 -0.6042 5.8798 11 1 5.3392 -0.0027 5.1093 12 6 5.6603 -1.1863 6.8564 13 7 5.1013 -1.9185 7.7950 14 14 7.5115 -0.9360 6.8454 15 1 7.8526 0.2704 7.6414 16 1 8.1752 -2.1245 7.4389 17 1 7.9782 -0.7548 5.4474 18 7 2.9405 -2.0180 3.4059 19 6 2.7914 -2.6292 2.2483 20 6 3.1405 -4.0913 2.1416 21 6 4.6148 -4.2911 2.4980 22 6 2.2686 -4.8955 3.1081 23 7 2.3505 -1.9961 1.1798 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.9158 1.0184 2.4957 32 1 1.3169 1.3198 5.2424 33 1 2.9813 1.7913 5.6616 34 1 2.4493 1.8196 3.9633 35 1 2.9733 -0.4216 6.8205 36 1 3.1639 -1.8702 5.8039 37 1 5.6502 -2.3283 8.4818 38 1 2.9635 -4.4336 1.1220 39 1 4.7918 -3.9487 3.5176 40 1 4.8674 -5.3485 2.4204 41 1 5.2359 -3.7181 1.8094 42 1 1.2182 -4.7532 2.8543 43 1 2.5207 -5.9531 3.0307 44 1 2.4457 -4.5532 4.1278 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000090065173.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:15 Heat of formation + Delta-G solvation = 14.319852 kcal Electronic energy + Delta-G solvation = -22343.380365 eV Core-core repulsion = 19294.508824 eV Total energy + Delta-G solvation = -3048.871541 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.97928 -38.27880 -37.50394 -35.44796 -34.72531 -33.11983 -31.30477 -29.57497 -28.07527 -28.04248 -27.27102 -25.85602 -24.84594 -23.44305 -21.56225 -20.41688 -18.78503 -18.43326 -17.98389 -16.64648 -16.28091 -16.20020 -15.65874 -15.47632 -15.22466 -15.07839 -14.84464 -14.72853 -14.10301 -14.01158 -13.59377 -13.36050 -13.17477 -13.04291 -12.97104 -12.88691 -12.64834 -12.59826 -12.29797 -12.20931 -12.16601 -12.10104 -11.92033 -11.82964 -11.78957 -11.34809 -11.16548 -10.62657 -10.36872 -9.86960 -8.73458 -8.15058 -6.34597 0.25710 0.60808 1.34049 1.36033 1.46119 2.16623 2.38962 3.03099 3.06065 3.08449 3.38223 3.83136 4.05448 4.11003 4.15717 4.23422 4.27386 4.31213 4.42272 4.47493 4.62019 4.70385 4.76132 4.79813 4.83551 4.87388 4.92590 4.95809 4.96775 4.99967 5.01148 5.10482 5.17474 5.25210 5.33750 5.38686 5.40945 5.48296 5.59833 5.71189 5.98423 6.10145 6.43087 6.71647 6.78462 7.33901 7.59229 8.85399 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.015358 B = 0.006041 C = 0.005001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.668145 B = 4634.230820 C = 5597.889500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.041 4.041 3 C -0.141 4.141 4 C 0.198 3.802 5 C -0.309 4.309 6 C 0.422 3.578 7 N -0.595 5.595 8 C 0.094 3.906 9 C 0.272 3.728 10 C -0.534 4.534 11 H 0.043 0.957 12 C 0.016 3.984 13 N -0.924 5.924 14 Si 0.959 3.041 15 H -0.267 1.267 16 H -0.278 1.278 17 H -0.278 1.278 18 N -0.590 5.590 19 C 0.347 3.653 20 C -0.021 4.021 21 C -0.132 4.132 22 C -0.129 4.129 23 N -0.584 5.584 24 H 0.055 0.945 25 H 0.089 0.911 26 H 0.045 0.955 27 H 0.090 0.910 28 H 0.045 0.955 29 H 0.088 0.912 30 H 0.064 0.936 31 H 0.160 0.840 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.085 0.915 35 H 0.013 0.987 36 H 0.016 0.984 37 H 0.266 0.734 38 H 0.109 0.891 39 H 0.035 0.965 40 H 0.089 0.911 41 H 0.044 0.956 42 H 0.051 0.949 43 H 0.089 0.911 44 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.931 3.415 -14.594 16.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.060 4.060 3 C -0.198 4.198 4 C 0.055 3.945 5 C -0.337 4.337 6 C 0.179 3.821 7 N -0.305 5.305 8 C -0.048 4.048 9 C 0.150 3.850 10 C -0.573 4.573 11 H 0.061 0.939 12 C -0.183 4.183 13 N -0.564 5.564 14 Si 0.784 3.216 15 H -0.192 1.192 16 H -0.203 1.203 17 H -0.203 1.203 18 N -0.314 5.314 19 C 0.077 3.923 20 C -0.041 4.041 21 C -0.190 4.190 22 C -0.187 4.187 23 N -0.304 5.304 24 H 0.075 0.925 25 H 0.108 0.892 26 H 0.064 0.936 27 H 0.108 0.892 28 H 0.064 0.936 29 H 0.107 0.893 30 H 0.083 0.917 31 H 0.178 0.822 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.103 0.897 35 H 0.031 0.969 36 H 0.034 0.966 37 H 0.075 0.925 38 H 0.127 0.873 39 H 0.054 0.946 40 H 0.108 0.892 41 H 0.063 0.937 42 H 0.070 0.930 43 H 0.108 0.892 44 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -7.650 2.541 -14.249 16.371 hybrid contribution 0.960 0.826 0.873 1.538 sum -6.690 3.367 -13.376 15.330 Atomic orbital electron populations 1.21737 0.92117 1.01879 1.03267 1.20139 0.97194 0.95937 0.92714 1.21876 1.00680 0.93718 1.03576 1.21835 0.88623 0.89139 0.94899 1.22079 1.15196 1.03294 0.93157 1.18984 0.87524 0.88601 0.86985 1.46946 1.61755 1.13237 1.08535 1.21820 0.99801 0.80055 1.03165 1.18759 0.91746 0.91948 0.82505 1.21581 0.93206 1.31425 1.11044 0.93915 1.25690 1.03182 0.94538 0.94900 1.70034 1.37380 1.33674 1.15273 0.85550 0.79857 0.78170 0.78012 1.19199 1.20341 1.20307 1.67794 1.25107 1.09961 1.28530 1.23273 0.88488 0.97560 0.82989 1.19993 0.96563 0.85601 1.01952 1.21694 0.93847 1.02709 1.00740 1.21683 0.98535 1.00370 0.98146 1.68088 1.20210 1.10501 1.31627 0.92540 0.89215 0.93614 0.89191 0.93602 0.89339 0.91738 0.82242 0.91726 0.91146 0.89671 0.96892 0.96596 0.92461 0.87273 0.94553 0.89187 0.93715 0.92998 0.89244 0.94396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.47 9.18 71.98 0.66 -1.81 16 2 C -0.04 -0.92 3.27 -11.54 -0.04 -0.96 16 3 C -0.14 -2.56 8.64 71.98 0.62 -1.94 16 4 C 0.20 6.42 5.82 42.42 0.25 6.67 16 5 C -0.31 -10.70 8.41 22.58 0.19 -10.51 16 6 C 0.42 18.33 7.39 133.16 0.98 19.32 16 7 N -0.60 -26.43 2.96 -732.64 -2.17 -28.60 16 8 C 0.09 3.08 10.31 127.77 1.32 4.40 16 9 C 0.27 14.68 5.23 85.63 0.45 15.13 16 10 C -0.53 -30.74 9.39 25.60 0.24 -30.50 16 11 H 0.04 2.50 7.81 -2.92 -0.02 2.48 16 12 C 0.02 0.93 5.46 84.66 0.46 1.39 16 13 N -0.92 -55.26 13.29 21.45 0.28 -54.98 16 14 Si 0.96 45.09 29.54 68.60 2.03 47.11 16 15 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 16 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 17 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 18 N -0.59 -27.22 8.60 -185.43 -1.59 -28.81 16 19 C 0.35 13.84 6.34 138.76 0.88 14.72 16 20 C -0.02 -0.69 3.25 -11.54 -0.04 -0.72 16 21 C -0.13 -4.40 9.08 71.98 0.65 -3.75 16 22 C -0.13 -3.98 9.09 71.98 0.65 -3.32 16 23 N -0.58 -21.42 10.24 -176.28 -1.80 -23.23 16 24 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 28 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.06 1.12 6.58 -2.39 -0.02 1.10 16 31 H 0.16 4.47 4.53 -2.92 -0.01 4.46 16 32 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.07 2.37 8.07 -2.39 -0.02 2.35 16 34 H 0.08 2.29 6.05 -2.39 -0.01 2.28 16 35 H 0.01 0.73 8.07 -2.38 -0.02 0.71 16 36 H 0.02 0.97 7.34 -2.39 -0.02 0.95 16 37 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 38 H 0.11 3.08 8.09 -2.39 -0.02 3.06 16 39 H 0.04 1.49 8.01 -2.39 -0.02 1.47 16 40 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 41 H 0.04 1.49 8.14 -2.38 -0.02 1.47 16 42 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 43 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 44 H 0.04 1.41 8.02 -2.38 -0.02 1.39 16 Total: -1.00 -70.03 357.22 4.98 -65.05 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: 0.96 Total: 15.33 kcal Atomic # 6 Polarization: 0.84 SS G_CDS: 7.28 Total: 8.12 kcal Atomic # 7 Polarization: -130.33 SS G_CDS: -5.28 Total: -135.61 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.11 kcal Total: -70.03 4.98 -65.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090065173.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.371 kcal (2) G-P(sol) polarization free energy of solvation -70.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.051 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds