Wall clock time and date at job start Mon Mar 30 2020 01:45:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42900 * 113.99851 * 2 1 4 4 C 1.52998 * 109.46895 * 179.97438 * 3 2 1 5 5 C 1.53003 * 109.47110 * 180.02562 * 4 3 2 6 6 H 1.09000 * 109.47031 * 304.99896 * 5 4 3 7 7 C 1.53001 * 109.47194 * 185.00211 * 5 4 3 8 8 N 1.46893 * 109.47309 * 65.00080 * 5 4 3 9 9 C 1.46903 * 111.00078 * 205.00318 * 8 5 4 10 10 H 1.08995 * 109.47227 * 34.99689 * 9 8 5 11 11 C 1.52996 * 109.47290 * 154.99979 * 9 8 5 12 12 C 1.50703 * 109.47158 * 295.00089 * 11 9 8 13 13 H 1.07997 * 119.99985 * 359.97438 * 12 11 9 14 14 C 1.37877 * 120.00146 * 180.02562 * 12 11 9 15 15 N 1.31514 * 119.99888 * 359.97438 * 14 12 11 16 16 Si 1.86792 * 120.00010 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.47381 * 89.99651 * 16 14 12 18 18 H 1.48502 * 109.47318 * 209.99324 * 16 14 12 19 19 H 1.48494 * 109.47186 * 329.99460 * 16 14 12 20 20 C 1.50706 * 109.46711 * 274.99761 * 9 8 5 21 21 C 1.38233 * 120.00109 * 319.72464 * 20 9 8 22 22 C 1.38237 * 119.99743 * 179.80918 * 21 20 9 23 23 C 1.38233 * 120.00125 * 0.40204 * 22 21 20 24 24 C 1.38238 * 120.00012 * 359.85160 * 23 22 21 25 25 C 1.38235 * 120.00123 * 359.95693 * 24 23 22 26 26 H 1.08997 * 109.46954 * 59.99722 * 1 2 3 27 27 H 1.08996 * 109.47217 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.46873 * 300.00077 * 1 2 3 29 29 H 1.09001 * 109.47107 * 60.00393 * 3 2 1 30 30 H 1.09000 * 109.47562 * 300.00191 * 3 2 1 31 31 H 1.09002 * 109.47317 * 60.00511 * 4 3 2 32 32 H 1.09000 * 109.47278 * 300.00495 * 4 3 2 33 33 H 1.09000 * 109.47119 * 300.00275 * 7 5 4 34 34 H 1.09001 * 109.47179 * 59.99788 * 7 5 4 35 35 H 1.08997 * 109.47266 * 179.97438 * 7 5 4 36 36 H 1.00903 * 111.00066 * 328.95248 * 8 5 4 37 37 H 1.09004 * 109.47171 * 54.99761 * 11 9 8 38 38 H 1.08997 * 109.47482 * 174.99693 * 11 9 8 39 39 H 0.97001 * 120.00171 * 180.02562 * 15 14 12 40 40 H 1.08004 * 119.99934 * 0.02562 * 21 20 9 41 41 H 1.07999 * 119.99896 * 180.23009 * 22 21 20 42 42 H 1.08002 * 120.00311 * 179.83689 * 23 22 21 43 43 H 1.08000 * 120.00524 * 179.97438 * 24 23 22 44 44 H 1.07999 * 120.00181 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1578 2.5824 0.0013 6 1 3.7675 3.1543 -0.8406 7 6 5.6781 2.4638 -0.1238 8 7 3.8218 3.2675 1.2565 9 6 3.8583 4.7261 1.0862 10 1 3.5118 4.9839 0.0855 11 6 2.9488 5.3839 2.1260 12 6 1.5184 4.9877 1.8647 13 1 1.2817 4.3326 1.0393 14 6 0.5119 5.4623 2.6787 15 7 0.8001 6.2604 3.6834 16 14 -1.2611 4.9718 2.3543 17 1 -1.5769 3.7309 3.1065 18 1 -2.1656 6.0629 2.7976 19 1 -1.4503 4.7315 0.9012 20 6 5.2707 5.2182 1.2712 21 6 6.0658 4.6791 2.2651 22 6 7.3627 5.1277 2.4322 23 6 7.8616 6.1213 1.6107 24 6 7.0646 6.6641 0.6202 25 6 5.7691 6.2128 0.4505 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.6887 1.8464 0.8900 30 1 1.6886 1.8465 -0.8899 31 1 3.8575 0.6436 -0.8892 32 1 3.8567 0.6438 0.8908 33 1 6.0684 1.8919 0.7179 34 1 5.9274 1.9555 -1.0553 35 1 6.1214 3.4596 -0.1238 36 1 2.9234 2.9663 1.6035 37 1 3.2403 5.0553 3.1235 38 1 3.0438 6.4676 2.0582 39 1 0.0920 6.5941 4.2564 40 1 5.6750 3.9049 2.9089 41 1 7.9852 4.7039 3.2063 42 1 8.8739 6.4736 1.7430 43 1 7.4542 7.4407 -0.0214 44 1 5.1463 6.6371 -0.3231 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000090664602.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:07 Heat of formation + Delta-G solvation = -38.823465 kcal Electronic energy + Delta-G solvation = -22171.464293 eV Core-core repulsion = 19087.995534 eV Total energy + Delta-G solvation = -3083.468759 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.15949 -37.96977 -36.59108 -33.88185 -32.26471 -30.40158 -29.67002 -29.37003 -27.64608 -26.20375 -24.51372 -22.85861 -22.14579 -21.81347 -19.94875 -19.57442 -16.70576 -16.33520 -16.12660 -15.89244 -15.05050 -14.99571 -14.87345 -14.59117 -14.37076 -13.77997 -13.27750 -12.90899 -12.77065 -12.65413 -12.33365 -12.15650 -12.06296 -11.81941 -11.35072 -11.27193 -11.10911 -11.00665 -10.89571 -10.64088 -10.62141 -10.53838 -10.32535 -10.25882 -9.63028 -9.44467 -9.20208 -8.48588 -8.39960 -8.01379 -7.77665 -6.09981 -4.14312 1.88440 1.93821 3.22324 3.30074 3.30620 3.88622 4.30050 4.37064 4.77071 5.19506 5.21662 5.28881 5.34993 5.36670 5.41031 5.44257 5.49442 5.52965 5.66703 5.72406 5.74507 5.80837 5.88748 6.01877 6.07341 6.08784 6.20127 6.24976 6.33654 6.42204 6.49435 6.56504 6.64607 6.73275 6.93793 7.00455 7.23418 7.29430 7.45769 7.54391 7.56159 7.88581 7.98780 8.19639 8.26719 8.91111 9.49917 11.00510 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.011689 B = 0.006885 C = 0.004613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2394.748560 B = 4066.025819 C = 6068.763101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.395 6.395 3 C 0.053 3.947 4 C -0.116 4.116 5 C 0.087 3.913 6 H 0.039 0.961 7 C -0.137 4.137 8 N -0.677 5.677 9 C 0.126 3.874 10 H 0.040 0.960 11 C 0.028 3.972 12 C -0.526 4.526 13 H 0.052 0.948 14 C 0.064 3.936 15 N -0.886 5.886 16 Si 0.886 3.114 17 H -0.279 1.279 18 H -0.285 1.285 19 H -0.275 1.275 20 C -0.047 4.047 21 C -0.086 4.086 22 C -0.130 4.130 23 C -0.139 4.139 24 C -0.127 4.127 25 C -0.126 4.126 26 H 0.038 0.962 27 H 0.082 0.918 28 H 0.044 0.956 29 H 0.062 0.938 30 H 0.045 0.955 31 H 0.069 0.931 32 H 0.078 0.922 33 H 0.058 0.942 34 H 0.044 0.956 35 H 0.060 0.940 36 H 0.357 0.643 37 H 0.029 0.971 38 H 0.023 0.977 39 H 0.262 0.738 40 H 0.128 0.872 41 H 0.112 0.888 42 H 0.110 0.890 43 H 0.112 0.888 44 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.683 -6.396 -6.905 12.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.314 6.314 3 C -0.024 4.024 4 C -0.154 4.154 5 C -0.023 4.023 6 H 0.057 0.943 7 C -0.195 4.195 8 N -0.313 5.313 9 C 0.017 3.983 10 H 0.058 0.942 11 C -0.009 4.009 12 C -0.564 4.564 13 H 0.070 0.930 14 C -0.139 4.139 15 N -0.525 5.525 16 Si 0.714 3.286 17 H -0.205 1.205 18 H -0.211 1.211 19 H -0.200 1.200 20 C -0.048 4.048 21 C -0.105 4.105 22 C -0.148 4.148 23 C -0.157 4.157 24 C -0.145 4.145 25 C -0.145 4.145 26 H 0.057 0.943 27 H 0.100 0.900 28 H 0.063 0.937 29 H 0.081 0.919 30 H 0.064 0.936 31 H 0.088 0.912 32 H 0.096 0.904 33 H 0.077 0.923 34 H 0.063 0.937 35 H 0.079 0.921 36 H 0.181 0.819 37 H 0.047 0.953 38 H 0.041 0.959 39 H 0.072 0.928 40 H 0.146 0.854 41 H 0.130 0.870 42 H 0.128 0.872 43 H 0.130 0.870 44 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 8.319 -6.503 -6.501 12.400 hybrid contribution -2.101 0.332 -0.629 2.218 sum 6.218 -6.171 -7.130 11.295 Atomic orbital electron populations 1.22721 0.81286 1.02228 1.00351 1.87807 1.19548 1.28502 1.95528 1.22709 0.94304 0.84336 1.01002 1.21683 0.92753 0.97671 1.03310 1.21471 0.95772 0.92913 0.92159 0.94325 1.21838 0.95110 1.02141 1.00415 1.60532 1.38573 1.05361 1.26825 1.20713 0.90654 0.87187 0.99752 0.94174 1.19259 0.92268 0.95837 0.93568 1.21099 0.91846 1.30017 1.13480 0.93030 1.24961 0.98856 0.94972 0.95070 1.69957 1.32828 1.32667 1.17003 0.86694 0.85120 0.78382 0.78444 1.20517 1.21093 1.19985 1.20165 0.96042 0.94492 0.94096 1.21035 0.92842 0.99166 0.97408 1.21116 0.96239 0.97929 0.99550 1.20957 0.99367 0.98323 0.97036 1.20958 0.94505 1.00275 0.98812 1.21032 0.95440 0.97932 1.00084 0.94304 0.89971 0.93711 0.91941 0.93632 0.91226 0.90377 0.92314 0.93684 0.92099 0.81879 0.95315 0.95863 0.92836 0.85434 0.86960 0.87186 0.87041 0.86821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 101.05 1.11 1.51 16 2 O -0.39 -6.13 10.70 -35.23 -0.38 -6.51 16 3 C 0.05 0.82 5.77 37.16 0.21 1.04 16 4 C -0.12 -1.66 5.18 -26.73 -0.14 -1.80 16 5 C 0.09 1.34 2.65 -67.71 -0.18 1.16 16 6 H 0.04 0.62 7.43 -51.93 -0.39 0.24 16 7 C -0.14 -1.94 8.87 37.16 0.33 -1.61 16 8 N -0.68 -12.19 5.43 -100.95 -0.55 -12.74 16 9 C 0.13 2.51 2.19 -68.86 -0.15 2.36 16 10 H 0.04 0.82 7.29 -51.93 -0.38 0.44 16 11 C 0.03 0.69 4.55 -27.88 -0.13 0.56 16 12 C -0.53 -13.76 8.12 -34.44 -0.28 -14.04 16 13 H 0.05 1.30 7.49 -52.49 -0.39 0.90 16 14 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 15 N -0.89 -25.66 13.29 55.43 0.74 -24.92 16 16 Si 0.89 20.67 29.54 -169.99 -5.02 15.65 16 17 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 18 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 19 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 20 C -0.05 -0.85 2.92 -104.62 -0.31 -1.16 16 21 C -0.09 -1.49 8.64 -39.58 -0.34 -1.83 16 22 C -0.13 -1.97 10.05 -39.58 -0.40 -2.36 16 23 C -0.14 -1.97 10.05 -39.58 -0.40 -2.37 16 24 C -0.13 -1.88 10.05 -39.58 -0.40 -2.28 16 25 C -0.13 -2.11 9.66 -39.58 -0.38 -2.49 16 26 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 28 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.06 1.07 6.42 -51.93 -0.33 0.74 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.93 5.94 -51.93 -0.31 0.62 16 36 H 0.36 6.99 4.95 -39.29 -0.19 6.80 16 37 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 40 H 0.13 2.27 7.73 -52.48 -0.41 1.86 16 41 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 42 H 0.11 1.28 8.06 -52.49 -0.42 0.86 16 43 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 44 H 0.11 1.80 8.04 -52.49 -0.42 1.38 16 LS Contribution 354.61 15.07 5.34 5.34 Total: -1.00 -28.28 354.61 -8.86 -37.14 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: -7.45 Total: 7.71 kcal Atomic # 6 Polarization: -20.13 SS G_CDS: -1.54 Total: -21.67 kcal Atomic # 7 Polarization: -37.85 SS G_CDS: 0.19 Total: -37.66 kcal Atomic # 8 Polarization: -6.13 SS G_CDS: -0.38 Total: -6.51 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -28.28 -8.86 -37.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090664602.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.683 kcal (2) G-P(sol) polarization free energy of solvation -28.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds