Wall clock time and date at job start Mon Mar 30 2020 01:45:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42901 * 114.00141 * 2 1 4 4 C 1.53000 * 109.47046 * 179.97438 * 3 2 1 5 5 C 1.52996 * 109.46944 * 179.97438 * 4 3 2 6 6 H 1.09002 * 109.47644 * 304.99781 * 5 4 3 7 7 C 1.53002 * 109.47047 * 185.00049 * 5 4 3 8 8 N 1.46900 * 109.47367 * 64.99933 * 5 4 3 9 9 C 1.46894 * 111.00348 * 204.99739 * 8 5 4 10 10 H 1.09001 * 109.47313 * 325.00318 * 9 8 5 11 11 C 1.52997 * 109.47141 * 204.99737 * 9 8 5 12 12 C 1.50703 * 109.47231 * 65.00498 * 11 9 8 13 13 H 1.08004 * 119.99386 * 359.97438 * 12 11 9 14 14 C 1.37873 * 120.00123 * 179.97438 * 12 11 9 15 15 N 1.31513 * 120.00477 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99690 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47605 * 59.99879 * 16 14 12 18 18 H 1.48507 * 109.47031 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47212 * 299.99556 * 16 14 12 20 20 C 1.50706 * 109.47120 * 85.00053 * 9 8 5 21 21 C 1.38234 * 120.00196 * 220.00289 * 20 9 8 22 22 C 1.38235 * 119.99814 * 179.97438 * 21 20 9 23 23 C 1.38230 * 120.00326 * 359.97438 * 22 21 20 24 24 C 1.38235 * 119.99899 * 359.95697 * 23 22 21 25 25 C 1.38234 * 120.00205 * 0.02562 * 24 23 22 26 26 H 1.09003 * 109.47405 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47261 * 300.00495 * 1 2 3 28 28 H 1.08998 * 109.47027 * 60.00649 * 1 2 3 29 29 H 1.08998 * 109.47128 * 59.99514 * 3 2 1 30 30 H 1.08996 * 109.46623 * 299.99725 * 3 2 1 31 31 H 1.09007 * 109.47262 * 59.99741 * 4 3 2 32 32 H 1.08996 * 109.47352 * 299.99484 * 4 3 2 33 33 H 1.08997 * 109.46952 * 299.99633 * 7 5 4 34 34 H 1.08994 * 109.47233 * 60.00146 * 7 5 4 35 35 H 1.09002 * 109.47236 * 180.02562 * 7 5 4 36 36 H 1.00903 * 110.99545 * 81.04192 * 8 5 4 37 37 H 1.09003 * 109.47187 * 185.00062 * 11 9 8 38 38 H 1.09000 * 109.47619 * 305.00206 * 11 9 8 39 39 H 0.96993 * 120.00619 * 180.02562 * 15 14 12 40 40 H 1.08000 * 119.99516 * 0.24808 * 21 20 9 41 41 H 1.08000 * 119.99297 * 179.97438 * 22 21 20 42 42 H 1.08001 * 120.00371 * 179.97438 * 23 22 21 43 43 H 1.07999 * 120.00043 * 179.97438 * 24 23 22 44 44 H 1.07997 * 120.00455 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 6 4.1577 2.5823 0.0000 6 1 3.7674 3.1535 -0.8423 7 6 5.6780 2.4636 -0.1251 8 7 3.8217 3.2685 1.2546 9 6 3.8583 4.7270 1.0832 10 1 4.6515 4.9908 0.3836 11 6 4.1275 5.3927 2.4342 12 6 5.5042 5.0133 2.9157 13 1 6.1248 4.3621 2.3181 14 6 5.9713 5.4975 4.1192 15 7 5.2158 6.2909 4.8467 16 14 7.6781 5.0278 4.7156 17 1 8.6901 5.4828 3.7287 18 1 7.9398 5.6749 6.0264 19 1 7.7614 3.5528 4.8659 20 6 2.5340 5.2027 0.5438 21 6 2.4957 6.1933 -0.4197 22 6 1.2809 6.6293 -0.9148 23 6 0.1045 6.0744 -0.4469 24 6 0.1429 5.0829 0.5155 25 6 1.3576 4.6466 1.0104 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 1.6885 1.8464 0.8899 30 1 1.6886 1.8463 -0.8900 31 1 3.8574 0.6434 -0.8891 32 1 3.8567 0.6439 0.8909 33 1 6.0683 1.8925 0.7172 34 1 5.9273 1.9545 -1.0560 35 1 6.1214 3.4593 -0.1251 36 1 4.4342 2.9767 2.0016 37 1 4.0667 6.4755 2.3242 38 1 3.3844 5.0588 3.1583 39 1 5.5445 6.6319 5.6931 40 1 3.4151 6.6234 -0.7887 41 1 1.2511 7.4035 -1.6672 42 1 -0.8446 6.4153 -0.8335 43 1 -0.7763 4.6496 0.8814 44 1 1.3876 3.8722 1.7626 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000090664606.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:13 Heat of formation + Delta-G solvation = -41.842691 kcal Electronic energy + Delta-G solvation = -22190.711646 eV Core-core repulsion = 19107.111964 eV Total energy + Delta-G solvation = -3083.599682 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.12080 -37.87711 -36.71616 -33.86002 -32.24156 -30.44316 -30.05231 -28.88273 -27.62476 -26.23535 -24.49511 -22.83363 -22.13701 -21.87532 -20.16229 -19.59039 -16.66420 -16.19204 -16.07999 -15.83815 -15.25713 -15.02423 -14.71644 -14.58882 -14.11090 -13.75834 -13.34206 -12.97319 -12.75625 -12.67592 -12.46069 -12.22554 -12.07296 -11.98757 -11.29078 -11.26715 -11.07268 -11.02028 -10.83691 -10.65069 -10.55731 -10.51705 -10.45230 -10.23943 -9.58510 -9.44774 -9.20783 -8.47580 -8.41534 -8.09104 -7.73333 -6.06230 -4.10410 1.84119 1.89207 3.28479 3.34127 3.35435 3.92257 4.26982 4.40496 4.79469 5.19449 5.29687 5.31246 5.33883 5.37043 5.37935 5.40625 5.46405 5.50703 5.64115 5.66614 5.74206 5.79009 5.87825 5.99760 6.03135 6.08273 6.19267 6.22942 6.36331 6.40613 6.47794 6.54858 6.58967 6.72706 6.89975 6.95335 7.19642 7.34699 7.44897 7.52008 7.58676 7.91702 7.98453 8.21246 8.30107 8.95146 9.54153 11.04279 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.012900 B = 0.006012 C = 0.004725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2170.098282 B = 4656.533825 C = 5924.855693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.400 6.400 3 C 0.068 3.932 4 C -0.102 4.102 5 C 0.086 3.914 6 H 0.070 0.930 7 C -0.178 4.178 8 N -0.676 5.676 9 C 0.127 3.873 10 H 0.042 0.958 11 C 0.029 3.971 12 C -0.525 4.525 13 H 0.054 0.946 14 C 0.063 3.937 15 N -0.889 5.889 16 Si 0.890 3.110 17 H -0.278 1.278 18 H -0.287 1.287 19 H -0.276 1.276 20 C -0.051 4.051 21 C -0.124 4.124 22 C -0.127 4.127 23 C -0.138 4.138 24 C -0.131 4.131 25 C -0.089 4.089 26 H 0.079 0.921 27 H 0.040 0.960 28 H 0.036 0.964 29 H 0.068 0.932 30 H 0.039 0.961 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.058 0.942 34 H 0.051 0.949 35 H 0.060 0.940 36 H 0.360 0.640 37 H 0.022 0.978 38 H 0.027 0.973 39 H 0.262 0.738 40 H 0.115 0.885 41 H 0.112 0.888 42 H 0.110 0.890 43 H 0.112 0.888 44 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.949 -6.342 -11.130 15.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.320 6.320 3 C -0.008 4.008 4 C -0.140 4.140 5 C -0.025 4.025 6 H 0.088 0.912 7 C -0.237 4.237 8 N -0.309 5.309 9 C 0.017 3.983 10 H 0.060 0.940 11 C -0.008 4.008 12 C -0.564 4.564 13 H 0.072 0.928 14 C -0.139 4.139 15 N -0.527 5.527 16 Si 0.717 3.283 17 H -0.204 1.204 18 H -0.213 1.213 19 H -0.202 1.202 20 C -0.052 4.052 21 C -0.143 4.143 22 C -0.145 4.145 23 C -0.156 4.156 24 C -0.149 4.149 25 C -0.107 4.107 26 H 0.097 0.903 27 H 0.059 0.941 28 H 0.055 0.945 29 H 0.086 0.914 30 H 0.057 0.943 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.077 0.923 34 H 0.070 0.930 35 H 0.079 0.921 36 H 0.182 0.818 37 H 0.040 0.960 38 H 0.046 0.954 39 H 0.072 0.928 40 H 0.133 0.867 41 H 0.130 0.870 42 H 0.128 0.872 43 H 0.130 0.870 44 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -8.505 -6.448 -11.033 15.351 hybrid contribution 1.677 0.352 0.335 1.746 sum -6.828 -6.096 -10.698 14.080 Atomic orbital electron populations 1.22650 0.81677 1.02002 0.99886 1.87813 1.19226 1.29432 1.95507 1.22551 0.93994 0.83354 1.00890 1.21470 0.93321 0.96914 1.02266 1.21452 0.92957 0.94055 0.93997 0.91187 1.22457 0.97362 1.02337 1.01569 1.60568 1.58840 1.05551 1.05978 1.20641 0.90536 0.87348 0.99728 0.94014 1.19238 0.96819 0.95677 0.89053 1.21095 1.00462 1.30179 1.04633 0.92785 1.24965 0.97240 0.94979 0.96716 1.69948 1.36712 1.32755 1.13325 0.86703 0.84774 0.78762 0.78024 1.20373 1.21301 1.20168 1.20235 0.96295 0.94611 0.94077 1.21051 0.97591 0.97936 0.97690 1.20971 0.92729 1.00240 1.00565 1.20960 0.97587 0.98245 0.98816 1.21113 0.97743 0.98064 0.97996 1.21037 0.91223 0.99296 0.99173 0.90254 0.94103 0.94520 0.91392 0.94308 0.91945 0.91186 0.92289 0.93006 0.92094 0.81786 0.96006 0.95423 0.92840 0.86732 0.86984 0.87157 0.87021 0.85492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 101.05 1.11 1.49 16 2 O -0.40 -5.76 10.70 -35.23 -0.38 -6.13 16 3 C 0.07 0.97 5.83 37.16 0.22 1.18 16 4 C -0.10 -1.42 5.26 -26.73 -0.14 -1.56 16 5 C 0.09 1.29 2.39 -67.71 -0.16 1.12 16 6 H 0.07 1.07 7.64 -51.93 -0.40 0.68 16 7 C -0.18 -2.57 9.15 37.16 0.34 -2.23 16 8 N -0.68 -11.80 4.75 -100.96 -0.48 -12.28 16 9 C 0.13 2.47 2.01 -68.87 -0.14 2.33 16 10 H 0.04 0.83 6.97 -51.93 -0.36 0.47 16 11 C 0.03 0.72 4.55 -27.88 -0.13 0.59 16 12 C -0.53 -13.73 8.12 -34.44 -0.28 -14.01 16 13 H 0.05 1.35 7.49 -52.48 -0.39 0.96 16 14 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 15 N -0.89 -25.85 13.29 55.43 0.74 -25.11 16 16 Si 0.89 20.91 29.54 -169.99 -5.02 15.89 16 17 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 18 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 20 C -0.05 -0.92 4.61 -104.62 -0.48 -1.40 16 21 C -0.12 -2.05 9.67 -39.58 -0.38 -2.43 16 22 C -0.13 -1.85 10.05 -39.59 -0.40 -2.25 16 23 C -0.14 -1.93 10.05 -39.59 -0.40 -2.33 16 24 C -0.13 -1.94 10.05 -39.58 -0.40 -2.33 16 25 C -0.09 -1.50 9.10 -39.58 -0.36 -1.86 16 26 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 1.03 6.92 -51.93 -0.36 0.67 16 30 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.81 8.14 -51.92 -0.42 0.39 16 32 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 33 H 0.06 0.86 8.13 -51.93 -0.42 0.44 16 34 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.96 7.43 -51.93 -0.39 0.58 16 36 H 0.36 6.94 6.95 -39.29 -0.27 6.67 16 37 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 40 H 0.11 1.79 8.04 -52.49 -0.42 1.37 16 41 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 42 H 0.11 1.26 8.06 -52.49 -0.42 0.84 16 43 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 44 H 0.13 2.20 7.11 -52.49 -0.37 1.82 16 LS Contribution 359.32 15.07 5.41 5.41 Total: -1.00 -28.32 359.32 -9.02 -37.33 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -7.59 Total: 6.94 kcal Atomic # 6 Polarization: -20.36 SS G_CDS: -1.69 Total: -22.05 kcal Atomic # 7 Polarization: -37.65 SS G_CDS: 0.26 Total: -37.39 kcal Atomic # 8 Polarization: -5.76 SS G_CDS: -0.38 Total: -6.13 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -28.32 -9.02 -37.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090664606.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.510 kcal (2) G-P(sol) polarization free energy of solvation -28.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds