Wall clock time and date at job start Mon Mar 30 2020 02:12:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42902 * 109.47230 * 2 1 4 4 C 1.42898 * 114.00186 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47319 * 180.02562 * 4 3 2 6 6 H 1.09001 * 109.47630 * 185.00204 * 5 4 3 7 7 C 1.53001 * 109.47328 * 305.00349 * 5 4 3 8 8 N 1.46905 * 109.47150 * 64.99949 * 5 4 3 9 9 C 1.46899 * 110.99900 * 154.99998 * 8 5 4 10 10 H 1.09005 * 109.47378 * 35.00274 * 9 8 5 11 11 C 1.53005 * 109.46917 * 155.00237 * 9 8 5 12 12 C 1.50695 * 109.46876 * 294.99915 * 11 9 8 13 13 H 1.08000 * 120.00494 * 359.97438 * 12 11 9 14 14 C 1.37877 * 119.99716 * 179.97438 * 12 11 9 15 15 N 1.31515 * 120.00135 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 120.00150 * 179.97438 * 14 12 11 17 17 H 1.48507 * 109.47233 * 89.99851 * 16 14 12 18 18 H 1.48495 * 109.47672 * 209.99999 * 16 14 12 19 19 H 1.48504 * 109.47165 * 330.00384 * 16 14 12 20 20 C 1.50698 * 109.47174 * 275.00074 * 9 8 5 21 21 C 1.38232 * 120.00345 * 319.72771 * 20 9 8 22 22 C 1.38234 * 120.00145 * 179.78429 * 21 20 9 23 23 C 1.38233 * 119.99994 * 0.44737 * 22 21 20 24 24 C 1.38232 * 119.99848 * 359.80743 * 23 22 21 25 25 C 1.38234 * 120.00152 * 359.97438 * 24 23 22 26 26 H 1.08998 * 109.47349 * 300.00228 * 1 2 3 27 27 H 1.09000 * 109.46950 * 59.99785 * 1 2 3 28 28 H 1.08997 * 109.47268 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47081 * 240.00210 * 2 1 3 30 30 H 1.08999 * 109.47384 * 119.99902 * 2 1 3 31 31 H 1.09002 * 109.47259 * 300.00293 * 4 3 2 32 32 H 1.09001 * 109.47074 * 60.00315 * 4 3 2 33 33 H 1.09002 * 109.46786 * 300.00010 * 7 5 4 34 34 H 1.09003 * 109.47390 * 59.99367 * 7 5 4 35 35 H 1.09004 * 109.47759 * 179.97438 * 7 5 4 36 36 H 1.00895 * 110.99521 * 31.05192 * 8 5 4 37 37 H 1.09000 * 109.46693 * 55.00136 * 11 9 8 38 38 H 1.08998 * 109.46803 * 175.00306 * 11 9 8 39 39 H 0.96998 * 120.00099 * 179.97438 * 15 14 12 40 40 H 1.08001 * 119.99837 * 359.97438 * 21 20 9 41 41 H 1.08002 * 120.00273 * 180.27447 * 22 21 20 42 42 H 1.08001 * 119.99890 * 179.83546 * 23 22 21 43 43 H 1.08004 * 120.00043 * 180.02562 * 24 23 22 44 44 H 1.08010 * 119.99921 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 0.0006 5 6 3.8254 2.9384 0.0012 6 1 4.9082 3.0255 -0.0880 7 6 3.1579 3.6449 -1.1804 8 7 3.3856 3.5621 1.2565 9 6 4.2070 4.7372 1.5764 10 1 4.4875 5.2464 0.6543 11 6 3.4063 5.6928 2.4634 12 6 2.2287 6.2280 1.6903 13 1 2.0676 5.9180 0.6684 14 6 1.3568 7.1134 2.2876 15 7 1.5532 7.4914 3.5319 16 14 -0.1026 7.7775 1.3292 17 1 -1.2710 6.8816 1.5230 18 1 -0.4369 9.1396 1.8170 19 1 0.2399 7.8389 -0.1145 20 6 5.4503 4.2976 2.3057 21 6 5.3754 3.3014 3.2611 22 6 6.5167 2.8951 3.9270 23 6 7.7312 3.4914 3.6440 24 6 7.8052 4.4913 2.6923 25 6 6.6647 4.8944 2.0233 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.8333 0.9767 0.8908 32 1 3.8340 0.9765 -0.8892 33 1 3.4842 3.1821 -2.1118 34 1 2.0750 3.5578 -1.0914 35 1 3.4386 4.6982 -1.1798 36 1 3.3966 2.8961 2.0143 37 1 3.0503 5.1585 3.3442 38 1 4.0438 6.5207 2.7736 39 1 0.9401 8.1146 3.9520 40 1 4.4257 2.8384 3.4852 41 1 6.4589 2.1137 4.6703 42 1 8.6224 3.1758 4.1661 43 1 8.7542 4.9569 2.4709 44 1 6.7225 5.6760 1.2800 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000090665991.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:58 Heat of formation + Delta-G solvation = -31.312264 kcal Electronic energy + Delta-G solvation = -22015.434069 eV Core-core repulsion = 18932.291020 eV Total energy + Delta-G solvation = -3083.143049 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.32671 -38.10195 -36.15035 -33.33417 -32.06883 -30.77576 -30.60540 -29.08360 -27.87213 -26.03003 -24.27416 -22.68781 -22.34302 -21.83107 -20.17052 -19.50942 -16.97994 -16.59202 -16.04873 -15.94489 -15.07091 -14.85091 -14.67760 -14.29773 -13.94349 -13.78905 -13.31522 -13.06384 -12.76937 -12.57710 -12.43490 -12.21524 -11.99487 -11.78120 -11.59254 -11.26309 -11.06763 -10.93980 -10.88080 -10.79743 -10.55274 -10.44241 -10.35831 -9.97729 -9.54629 -9.41608 -8.93463 -8.61789 -8.21111 -8.17611 -7.57437 -5.81344 -3.78616 1.70542 1.71555 3.45300 3.50670 3.54679 3.84861 4.12266 4.63060 4.76254 5.07646 5.08918 5.18923 5.20228 5.27622 5.30479 5.36622 5.39912 5.47131 5.52179 5.56246 5.64547 5.83196 5.86364 5.87336 5.95142 6.03025 6.14731 6.20184 6.23352 6.32566 6.40681 6.51380 6.77174 6.77799 6.83677 6.98304 7.02549 7.33908 7.39149 7.62035 7.75028 8.06039 8.12496 8.22645 8.64276 9.26623 9.82266 11.30735 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.008649 B = 0.007820 C = 0.004651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3236.473982 B = 3579.520768 C = 6019.126470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.056 3.944 3 O -0.363 6.363 4 C 0.065 3.935 5 C 0.087 3.913 6 H 0.046 0.954 7 C -0.132 4.132 8 N -0.645 5.645 9 C 0.127 3.873 10 H 0.075 0.925 11 C 0.043 3.957 12 C -0.484 4.484 13 H 0.062 0.938 14 C 0.050 3.950 15 N -0.905 5.905 16 Si 0.890 3.110 17 H -0.283 1.283 18 H -0.291 1.291 19 H -0.276 1.276 20 C -0.090 4.090 21 C -0.120 4.120 22 C -0.120 4.120 23 C -0.138 4.138 24 C -0.121 4.121 25 C -0.117 4.117 26 H 0.066 0.934 27 H 0.062 0.938 28 H 0.064 0.936 29 H 0.040 0.960 30 H 0.042 0.958 31 H 0.042 0.958 32 H 0.046 0.954 33 H 0.040 0.960 34 H 0.072 0.928 35 H 0.056 0.944 36 H 0.332 0.668 37 H 0.018 0.982 38 H 0.017 0.983 39 H 0.256 0.744 40 H 0.120 0.880 41 H 0.115 0.885 42 H 0.114 0.886 43 H 0.115 0.885 44 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.087 -14.024 -5.124 16.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.021 4.021 3 O -0.282 6.282 4 C -0.012 4.012 5 C -0.023 4.023 6 H 0.064 0.936 7 C -0.190 4.190 8 N -0.277 5.277 9 C 0.018 3.982 10 H 0.093 0.907 11 C 0.006 3.994 12 C -0.523 4.523 13 H 0.080 0.920 14 C -0.149 4.149 15 N -0.546 5.546 16 Si 0.719 3.281 17 H -0.209 1.209 18 H -0.218 1.218 19 H -0.201 1.201 20 C -0.092 4.092 21 C -0.138 4.138 22 C -0.138 4.138 23 C -0.156 4.156 24 C -0.139 4.139 25 C -0.136 4.136 26 H 0.085 0.915 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.059 0.941 34 H 0.091 0.909 35 H 0.075 0.925 36 H 0.152 0.848 37 H 0.036 0.964 38 H 0.035 0.965 39 H 0.066 0.934 40 H 0.138 0.862 41 H 0.133 0.867 42 H 0.132 0.868 43 H 0.133 0.867 44 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 7.360 -13.391 -5.310 16.177 hybrid contribution 0.252 -0.277 0.023 0.375 sum 7.612 -13.668 -5.287 16.514 Atomic orbital electron populations 1.21710 0.93892 1.01607 1.03538 1.22407 0.95699 0.84773 0.99237 1.88097 1.20241 1.24765 1.95114 1.22668 0.82179 0.97133 0.99228 1.21569 0.96330 0.91024 0.93392 0.93646 1.21669 1.02669 1.00009 0.94651 1.60643 1.54745 1.08944 1.03370 1.21064 0.87061 0.92008 0.98115 0.90683 1.19074 0.94097 0.92139 0.94102 1.21130 1.08555 1.23443 0.99145 0.92015 1.24986 0.97965 0.97029 0.94928 1.69974 1.37734 1.34641 1.12213 0.86629 0.83467 0.77839 0.80198 1.20906 1.21757 1.20070 1.21255 0.96842 0.94632 0.96493 1.20975 0.98171 0.98075 0.96604 1.21052 0.92911 1.00096 0.99725 1.21000 0.97503 0.97990 0.99109 1.21081 0.98178 0.97665 0.97013 1.21099 0.92266 0.99833 1.00411 0.91488 0.91922 0.91690 0.94189 0.93951 0.94002 0.93609 0.94092 0.90936 0.92471 0.84778 0.96375 0.96463 0.93418 0.86239 0.86679 0.86839 0.86690 0.86276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 10.28 37.16 0.38 -1.28 16 2 C 0.06 0.66 6.66 37.16 0.25 0.91 16 3 O -0.36 -5.61 9.41 -35.23 -0.33 -5.94 16 4 C 0.07 0.90 5.49 37.16 0.20 1.10 16 5 C 0.09 1.38 2.83 -67.71 -0.19 1.19 16 6 H 0.05 0.70 7.64 -51.93 -0.40 0.30 16 7 C -0.13 -2.17 9.20 37.16 0.34 -1.83 16 8 N -0.65 -12.19 5.70 -100.95 -0.58 -12.77 16 9 C 0.13 2.57 1.98 -68.86 -0.14 2.44 16 10 H 0.08 1.54 6.98 -51.93 -0.36 1.18 16 11 C 0.04 1.11 4.63 -27.88 -0.13 0.98 16 12 C -0.48 -13.70 8.84 -34.44 -0.30 -14.00 16 13 H 0.06 1.74 7.74 -52.49 -0.41 1.33 16 14 C 0.05 1.46 5.46 -17.82 -0.10 1.36 16 15 N -0.90 -27.77 13.29 55.43 0.74 -27.04 16 16 Si 0.89 22.53 29.54 -169.99 -5.02 17.51 16 17 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 18 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 19 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 20 C -0.09 -1.60 4.61 -104.63 -0.48 -2.09 16 21 C -0.12 -1.96 9.11 -39.58 -0.36 -2.33 16 22 C -0.12 -1.71 10.05 -39.58 -0.40 -2.10 16 23 C -0.14 -1.86 10.05 -39.59 -0.40 -2.26 16 24 C -0.12 -1.71 10.05 -39.58 -0.40 -2.11 16 25 C -0.12 -1.90 9.67 -39.58 -0.38 -2.29 16 26 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.04 0.54 8.02 -51.93 -0.42 0.12 16 32 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.07 1.34 7.56 -51.93 -0.39 0.94 16 35 H 0.06 1.00 7.43 -51.93 -0.39 0.62 16 36 H 0.33 6.01 5.91 -39.29 -0.23 5.77 16 37 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 40 H 0.12 1.92 6.53 -52.49 -0.34 1.58 16 41 H 0.12 1.36 8.06 -52.49 -0.42 0.93 16 42 H 0.11 1.23 8.06 -52.49 -0.42 0.81 16 43 H 0.12 1.33 8.06 -52.48 -0.42 0.90 16 44 H 0.12 1.82 8.04 -52.48 -0.42 1.39 16 LS Contribution 359.75 15.07 5.42 5.42 Total: -1.00 -31.47 359.75 -9.44 -40.91 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: -7.56 Total: 4.20 kcal Atomic # 6 Polarization: -20.19 SS G_CDS: -2.10 Total: -22.29 kcal Atomic # 7 Polarization: -39.97 SS G_CDS: 0.16 Total: -39.81 kcal Atomic # 8 Polarization: -5.61 SS G_CDS: -0.33 Total: -5.94 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.47 -9.44 -40.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090665991.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.597 kcal (2) G-P(sol) polarization free energy of solvation -31.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds