Wall clock time and date at job start Mon Mar 30 2020 01:45:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.47222 * 2 1 4 4 C 1.52998 * 109.47363 * 119.99600 * 2 1 3 5 5 C 1.52995 * 109.47616 * 185.75072 * 4 2 1 6 6 O 1.42898 * 109.47427 * 184.79894 * 5 4 2 7 7 N 1.46896 * 109.47363 * 239.99857 * 2 1 3 8 8 C 1.46904 * 110.99652 * 327.02091 * 7 2 1 9 9 C 1.53000 * 109.47293 * 293.09154 * 8 7 2 10 10 C 1.50703 * 109.47003 * 187.00946 * 9 8 7 11 11 H 1.08002 * 119.99922 * 0.02562 * 10 9 8 12 12 C 1.37871 * 119.99650 * 180.02562 * 10 9 8 13 13 N 1.31510 * 120.00627 * 359.97438 * 12 10 9 14 14 Si 1.86810 * 119.99824 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47211 * 89.99859 * 14 12 10 16 16 H 1.48498 * 109.47162 * 210.00106 * 14 12 10 17 17 H 1.48501 * 109.46641 * 329.99566 * 14 12 10 18 18 C 1.46896 * 111.00202 * 90.97799 * 7 2 1 19 19 C 1.50698 * 109.47295 * 77.20884 * 18 7 2 20 20 C 1.38237 * 119.99511 * 267.76715 * 19 18 7 21 21 C 1.38241 * 119.99836 * 179.76552 * 20 19 18 22 22 C 1.38242 * 119.99602 * 0.50827 * 21 20 19 23 23 C 1.38233 * 119.99825 * 359.74509 * 22 21 20 24 24 C 1.38233 * 120.00033 * 88.04149 * 19 18 7 25 25 H 1.09003 * 109.47445 * 300.59593 * 1 2 3 26 26 H 1.08999 * 109.47719 * 60.60201 * 1 2 3 27 27 H 1.09003 * 109.47016 * 180.59736 * 1 2 3 28 28 H 1.09005 * 109.47149 * 65.74546 * 4 2 1 29 29 H 1.09007 * 109.46961 * 305.75216 * 4 2 1 30 30 H 1.08998 * 109.47563 * 64.79597 * 5 4 2 31 31 H 1.09006 * 109.46578 * 304.79566 * 5 4 2 32 32 H 0.96702 * 114.00134 * 175.00670 * 6 5 4 33 33 H 1.08999 * 109.46936 * 53.09669 * 8 7 2 34 34 H 1.09003 * 109.46695 * 173.09585 * 8 7 2 35 35 H 1.09000 * 109.47010 * 307.00518 * 9 8 7 36 36 H 1.08998 * 109.47254 * 67.00950 * 9 8 7 37 37 H 0.97000 * 120.00174 * 180.02562 * 13 12 10 38 38 H 1.08997 * 109.47407 * 197.20883 * 18 7 2 39 39 H 1.09001 * 109.46748 * 317.20596 * 18 7 2 40 40 H 1.07992 * 120.00321 * 359.97438 * 20 19 18 41 41 H 1.07991 * 120.00546 * 180.23063 * 21 20 19 42 42 H 1.07999 * 119.99780 * 179.72575 * 22 21 20 43 43 H 1.08003 * 119.99606 * 179.97438 * 23 22 21 44 44 H 1.07995 * 120.00231 * 0.02562 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5631 -0.5972 1.3237 6 8 4.0501 -1.3635 2.4271 7 7 2.0197 -0.6925 -1.1994 8 6 1.1104 -1.7789 -1.5880 9 6 1.1393 -2.8746 -0.5205 10 6 0.3434 -4.0620 -0.9977 11 1 -0.1349 -4.0377 -1.9658 12 6 0.2257 -5.1792 -0.1985 13 7 0.8085 -5.2090 0.9801 14 14 -0.7603 -6.6514 -0.7903 15 1 0.1319 -7.5798 -1.5299 16 1 -1.3484 -7.3551 0.3776 17 1 -1.8484 -6.1892 -1.6890 18 6 2.2172 0.2507 -2.3081 19 6 3.4948 1.0200 -2.0915 20 6 3.4673 2.2327 -1.4284 21 6 4.6399 2.9362 -1.2254 22 6 5.8384 2.4320 -1.6949 23 6 5.8650 1.2219 -2.3626 24 6 4.6933 0.5159 -2.5610 25 1 -0.3634 0.5231 0.8846 26 1 -0.3634 0.5044 -0.8953 27 1 -0.3633 -1.0276 0.0107 28 1 1.7631 -1.7743 1.1994 29 1 1.5950 -0.2701 2.1363 30 1 3.8364 0.4492 1.4593 31 1 4.0036 -0.9709 0.3992 32 1 5.0146 -1.3933 2.4902 33 1 0.0969 -1.3888 -1.6809 34 1 1.4289 -2.1946 -2.5440 35 1 2.1704 -3.1778 -0.3388 36 1 0.7045 -2.4933 0.4034 37 1 0.7260 -5.9953 1.5422 38 1 2.2794 -0.2998 -3.2468 39 1 1.3776 0.9446 -2.3487 40 1 2.5303 2.6288 -1.0659 41 1 4.6191 3.8817 -0.7041 42 1 6.7539 2.9837 -1.5402 43 1 6.8014 0.8283 -2.7297 44 1 4.7140 -0.4291 -3.0833 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093303516.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:52 Heat of formation + Delta-G solvation = -42.021123 kcal Electronic energy + Delta-G solvation = -22433.139123 eV Core-core repulsion = 19349.531703 eV Total energy + Delta-G solvation = -3083.607420 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.71090 -39.30976 -37.54095 -35.21737 -33.86130 -32.62705 -31.67471 -30.76607 -29.59762 -26.96493 -25.59841 -24.23584 -23.40190 -22.34243 -21.92508 -20.51049 -18.50711 -18.15552 -17.49610 -17.22545 -16.49759 -16.27265 -16.05110 -15.74420 -15.63688 -15.10827 -14.61763 -14.33943 -14.15843 -14.13412 -13.60631 -13.45513 -13.28961 -13.08245 -13.04842 -12.89391 -12.65834 -12.45598 -12.11490 -12.03645 -11.83160 -11.77095 -11.74390 -11.58641 -11.21894 -10.91298 -10.63692 -10.37249 -9.70826 -9.57724 -9.02660 -8.13671 -6.24592 0.53020 0.60243 1.40408 1.41357 1.52014 2.42480 2.85152 3.19104 3.31578 3.42869 3.91364 4.01896 4.13797 4.18333 4.25230 4.34260 4.39279 4.43548 4.48230 4.57809 4.62704 4.64905 4.70838 4.76881 4.78271 4.87918 4.90625 5.07952 5.17550 5.20117 5.23799 5.25765 5.31019 5.44166 5.62132 5.65648 5.70890 5.79693 5.83964 5.93803 6.19768 6.22463 6.39302 6.43117 6.94148 6.98082 7.43770 8.97009 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.020724 B = 0.004751 C = 0.004508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.785540 B = 5891.916708 C = 6209.513691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.096 3.904 3 H 0.093 0.907 4 C -0.131 4.131 5 C 0.099 3.901 6 O -0.599 6.599 7 N -0.534 5.534 8 C 0.071 3.929 9 C 0.039 3.961 10 C -0.543 4.543 11 H 0.057 0.943 12 C 0.004 3.996 13 N -0.928 5.928 14 Si 0.958 3.042 15 H -0.275 1.275 16 H -0.284 1.284 17 H -0.263 1.263 18 C 0.090 3.910 19 C -0.077 4.077 20 C -0.124 4.124 21 C -0.125 4.125 22 C -0.128 4.128 23 C -0.128 4.128 24 C -0.117 4.117 25 H 0.068 0.932 26 H 0.064 0.936 27 H 0.051 0.949 28 H 0.066 0.934 29 H 0.059 0.941 30 H 0.050 0.950 31 H 0.043 0.957 32 H 0.389 0.611 33 H 0.037 0.963 34 H 0.055 0.945 35 H -0.016 1.016 36 H 0.016 0.984 37 H 0.261 0.739 38 H 0.077 0.923 39 H 0.052 0.948 40 H 0.127 0.873 41 H 0.141 0.859 42 H 0.141 0.859 43 H 0.134 0.866 44 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.717 17.686 -5.013 19.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.012 4.012 3 H 0.110 0.890 4 C -0.169 4.169 5 C 0.022 3.978 6 O -0.406 6.406 7 N -0.258 5.258 8 C -0.056 4.056 9 C 0.002 3.998 10 C -0.582 4.582 11 H 0.075 0.925 12 C -0.194 4.194 13 N -0.568 5.568 14 Si 0.783 3.217 15 H -0.201 1.201 16 H -0.210 1.210 17 H -0.187 1.187 18 C -0.037 4.037 19 C -0.078 4.078 20 C -0.143 4.143 21 C -0.143 4.143 22 C -0.146 4.146 23 C -0.146 4.146 24 C -0.136 4.136 25 H 0.087 0.913 26 H 0.083 0.917 27 H 0.070 0.930 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.238 0.762 33 H 0.055 0.945 34 H 0.073 0.927 35 H 0.003 0.997 36 H 0.034 0.966 37 H 0.069 0.931 38 H 0.096 0.904 39 H 0.070 0.930 40 H 0.145 0.855 41 H 0.159 0.841 42 H 0.159 0.841 43 H 0.152 0.848 44 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 7.541 17.291 -4.672 19.433 hybrid contribution -0.639 -0.891 -0.291 1.135 sum 6.902 16.399 -4.963 18.472 Atomic orbital electron populations 1.22437 0.96831 1.02410 1.02312 1.21510 0.93061 0.97191 0.89445 0.88953 1.21943 0.94973 1.02901 0.97048 1.21939 0.94576 0.93390 0.87902 1.86483 1.27637 1.75553 1.50948 1.62167 1.48448 1.10657 1.04483 1.22155 0.93696 0.91249 0.98491 1.19126 0.94527 0.92042 0.94133 1.21690 1.32204 1.01237 1.03023 0.92501 1.25873 0.96883 1.01643 0.94980 1.70131 1.45301 1.30236 1.11137 0.85553 0.79022 0.79215 0.77866 1.20056 1.20989 1.18712 1.21088 0.94388 0.94012 0.94259 1.19815 0.94825 0.94791 0.98345 1.21225 0.99191 0.94803 0.99047 1.21389 0.92340 1.00566 0.99965 1.21424 0.98792 0.96185 0.98238 1.21376 0.98212 0.95598 0.99424 1.21153 0.92662 0.99510 1.00272 0.91287 0.91662 0.93048 0.91574 0.92197 0.93184 0.93868 0.76225 0.94471 0.92687 0.99720 0.96584 0.93052 0.90438 0.92953 0.85540 0.84139 0.84091 0.84766 0.86755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.75 7.84 71.98 0.56 -5.18 16 2 C 0.10 3.09 2.01 44.91 0.09 3.18 16 3 H 0.09 2.51 5.49 -2.38 -0.01 2.50 16 4 C -0.13 -4.98 4.89 30.59 0.15 -4.83 16 5 C 0.10 3.43 6.99 71.98 0.50 3.94 16 6 O -0.60 -21.82 13.66 -148.98 -2.03 -23.86 16 7 N -0.53 -18.30 3.72 -875.54 -3.26 -21.56 16 8 C 0.07 2.94 4.37 86.30 0.38 3.32 16 9 C 0.04 2.04 3.28 29.85 0.10 2.14 16 10 C -0.54 -31.10 9.10 25.60 0.23 -30.87 16 11 H 0.06 3.12 7.74 -2.91 -0.02 3.10 16 12 C 0.00 0.25 5.46 84.65 0.46 0.71 16 13 N -0.93 -57.82 13.29 21.44 0.28 -57.54 16 14 Si 0.96 45.03 29.54 68.60 2.03 47.06 16 15 H -0.27 -12.56 7.11 99.48 0.71 -11.86 16 16 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 17 H -0.26 -11.73 7.11 99.48 0.71 -11.03 16 18 C 0.09 2.46 5.08 85.56 0.43 2.90 16 19 C -0.08 -1.93 5.19 -19.87 -0.10 -2.04 16 20 C -0.12 -2.68 8.51 22.27 0.19 -2.49 16 21 C -0.12 -2.31 10.05 22.27 0.22 -2.08 16 22 C -0.13 -2.33 10.05 22.27 0.22 -2.10 16 23 C -0.13 -2.64 10.05 22.27 0.22 -2.42 16 24 C -0.12 -2.90 9.71 22.27 0.22 -2.69 16 25 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 26 H 0.06 1.80 7.62 -2.39 -0.02 1.78 16 27 H 0.05 2.01 4.92 -2.39 -0.01 2.00 16 28 H 0.07 3.22 4.25 -2.38 -0.01 3.21 16 29 H 0.06 2.16 8.14 -2.38 -0.02 2.14 16 30 H 0.05 1.46 8.14 -2.39 -0.02 1.45 16 31 H 0.04 1.61 7.65 -2.38 -0.02 1.59 16 32 H 0.39 9.95 9.12 -74.06 -0.68 9.27 16 33 H 0.04 1.48 5.81 -2.39 -0.01 1.47 16 34 H 0.05 2.27 7.79 -2.39 -0.02 2.25 16 35 H -0.02 -0.94 8.05 -2.39 -0.02 -0.96 16 36 H 0.02 0.91 4.33 -2.39 -0.01 0.90 16 37 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 38 H 0.08 2.12 7.65 -2.39 -0.02 2.10 16 39 H 0.05 1.30 7.55 -2.39 -0.02 1.28 16 40 H 0.13 2.40 7.28 -2.91 -0.02 2.38 16 41 H 0.14 1.89 8.06 -2.92 -0.02 1.86 16 42 H 0.14 1.81 8.06 -2.91 -0.02 1.78 16 43 H 0.13 2.22 8.06 -2.91 -0.02 2.20 16 44 H 0.11 2.89 8.06 -2.91 -0.02 2.87 16 Total: -1.00 -69.26 344.32 1.21 -68.05 By element: Atomic # 1 Polarization: 26.05 SS G_CDS: 0.31 Total: 26.36 kcal Atomic # 6 Polarization: -42.39 SS G_CDS: 3.89 Total: -38.51 kcal Atomic # 7 Polarization: -76.12 SS G_CDS: -2.98 Total: -79.10 kcal Atomic # 8 Polarization: -21.82 SS G_CDS: -2.03 Total: -23.86 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -69.26 1.21 -68.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093303516.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.026 kcal (2) G-P(sol) polarization free energy of solvation -69.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds