Wall clock time and date at job start Mon Mar 30 2020 01:45:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.46846 * 2 1 4 4 C 1.52992 * 109.47250 * 239.99657 * 2 1 3 5 5 C 1.53005 * 109.47113 * 173.46336 * 4 2 1 6 6 O 1.42898 * 109.47151 * 185.01355 * 5 4 2 7 7 N 1.46899 * 109.46963 * 119.99724 * 2 1 3 8 8 C 1.46902 * 111.00036 * 31.85731 * 7 2 1 9 9 C 1.53000 * 109.46964 * 69.42913 * 8 7 2 10 10 C 1.50701 * 109.46883 * 173.00456 * 9 8 7 11 11 H 1.08007 * 120.00360 * 0.02562 * 10 9 8 12 12 C 1.37872 * 120.00137 * 179.97438 * 10 9 8 13 13 N 1.31515 * 119.99781 * 0.02562 * 12 10 9 14 14 Si 1.86796 * 120.00222 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.47049 * 60.00113 * 14 12 10 16 16 H 1.48507 * 109.47468 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47259 * 299.99884 * 14 12 10 18 18 C 1.46902 * 110.99953 * 267.90417 * 7 2 1 19 19 C 1.50706 * 109.46866 * 287.45814 * 18 7 2 20 20 C 1.38234 * 120.00103 * 275.75551 * 19 18 7 21 21 C 1.38239 * 119.99928 * 179.76955 * 20 19 18 22 22 C 1.38234 * 119.99768 * 0.50570 * 21 20 19 23 23 C 1.38231 * 120.00214 * 359.74586 * 22 21 20 24 24 C 1.38234 * 119.99729 * 96.03077 * 19 18 7 25 25 H 1.09000 * 109.47308 * 297.31941 * 1 2 3 26 26 H 1.08992 * 109.47151 * 57.32653 * 1 2 3 27 27 H 1.09005 * 109.46683 * 177.32150 * 1 2 3 28 28 H 1.08999 * 109.47553 * 293.46430 * 4 2 1 29 29 H 1.09000 * 109.47296 * 53.46479 * 4 2 1 30 30 H 1.08998 * 109.46844 * 305.01601 * 5 4 2 31 31 H 1.08996 * 109.46651 * 65.01649 * 5 4 2 32 32 H 0.96696 * 114.00151 * 180.02562 * 6 5 4 33 33 H 1.08997 * 109.47010 * 309.42759 * 8 7 2 34 34 H 1.09007 * 109.46624 * 189.42702 * 8 7 2 35 35 H 1.08991 * 109.47039 * 292.99988 * 9 8 7 36 36 H 1.08991 * 109.47411 * 53.00671 * 9 8 7 37 37 H 0.97001 * 120.00044 * 179.97438 * 13 12 10 38 38 H 1.09000 * 109.47037 * 47.45786 * 18 7 2 39 39 H 1.09005 * 109.47225 * 167.46297 * 18 7 2 40 40 H 1.08003 * 119.99804 * 0.02562 * 20 19 18 41 41 H 1.07997 * 119.99552 * 180.23153 * 21 20 19 42 42 H 1.08003 * 119.99668 * 179.72822 * 22 21 20 43 43 H 1.07998 * 120.00161 * 179.97438 * 23 22 21 44 44 H 1.08001 * 120.00164 * 0.02562 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 3.5613 -0.5806 -1.3339 6 8 4.0250 -1.1525 -2.5586 7 7 2.0197 -0.6924 1.1995 8 6 1.0969 -1.7616 1.6037 9 6 1.1455 -2.8931 0.5750 10 6 0.3332 -4.0604 1.0736 11 1 -0.1680 -4.0011 2.0285 12 6 0.2288 -5.2038 0.3103 13 7 0.8386 -5.2760 -0.8527 14 14 -0.7775 -6.6510 0.9286 15 1 -2.1856 -6.2246 1.1303 16 1 -0.7305 -7.7493 -0.0699 17 1 -0.2158 -7.1300 2.2172 18 6 2.2425 0.2547 2.3001 19 6 3.4683 1.0821 2.0103 20 6 4.7220 0.5961 2.3313 21 6 5.8467 1.3530 2.0612 22 6 5.7170 2.6004 1.4797 23 6 4.4631 3.0886 1.1635 24 6 3.3386 2.3295 1.4288 25 1 -0.3634 0.4716 0.9130 26 1 -0.3633 0.5547 -0.8650 27 1 -0.3633 -1.0266 -0.0480 28 1 1.7754 -1.7772 -1.1926 29 1 1.5844 -0.2795 -2.1353 30 1 3.8309 0.4750 -1.3007 31 1 4.0215 -1.0998 -0.4933 32 1 4.9829 -1.0991 -2.6798 33 1 0.0833 -1.3647 1.6598 34 1 1.3914 -2.1456 2.5804 35 1 0.7339 -2.5418 -0.3711 36 1 2.1790 -3.2062 0.4278 37 1 0.7656 -6.0806 -1.3896 38 1 1.3765 0.9097 2.3966 39 1 2.3871 -0.2959 3.2296 40 1 4.8229 -0.3768 2.7893 41 1 6.8264 0.9716 2.3086 42 1 6.5955 3.1936 1.2727 43 1 4.3618 4.0633 0.7096 44 1 2.3589 2.7113 1.1825 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093303517.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:56 Heat of formation + Delta-G solvation = -23.860613 kcal Electronic energy + Delta-G solvation = -22420.772290 eV Core-core repulsion = 19337.952369 eV Total energy + Delta-G solvation = -3082.819921 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.59643 -38.09979 -36.17365 -33.22725 -32.60907 -31.10788 -30.79180 -29.14166 -28.27740 -25.35209 -24.12508 -22.71312 -22.49881 -21.07711 -20.51231 -19.00647 -16.82126 -16.74546 -16.36708 -15.71918 -15.19451 -15.02676 -14.47756 -14.44316 -14.27741 -13.71368 -13.45249 -13.30519 -12.83859 -12.54608 -12.28052 -12.12267 -11.97894 -11.68687 -11.43240 -11.23263 -11.01793 -10.96810 -10.82860 -10.59813 -10.53752 -10.46616 -10.18542 -9.75346 -9.48368 -9.34001 -8.86971 -8.75989 -8.64734 -8.26289 -7.65327 -5.94647 -3.97551 1.41571 1.47172 3.35265 3.40342 3.41969 3.81168 4.44477 4.60619 4.69242 4.90043 4.94018 5.04717 5.16945 5.39574 5.40338 5.46875 5.56667 5.58123 5.74258 5.76731 5.78542 5.85744 5.99101 6.06675 6.09112 6.10466 6.13646 6.33387 6.40957 6.46461 6.52618 6.55921 6.65601 6.70355 6.76717 6.92898 7.06789 7.11180 7.55172 7.66756 7.81295 7.95014 8.10582 8.13430 8.47963 9.09403 9.65770 11.15842 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.020955 B = 0.004726 C = 0.004465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.863076 B = 5923.831926 C = 6270.051518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.089 3.911 3 H 0.067 0.933 4 C -0.127 4.127 5 C 0.092 3.908 6 O -0.576 6.576 7 N -0.526 5.526 8 C 0.053 3.947 9 C 0.026 3.974 10 C -0.525 4.525 11 H 0.051 0.949 12 C 0.060 3.940 13 N -0.889 5.889 14 Si 0.889 3.111 15 H -0.278 1.278 16 H -0.288 1.288 17 H -0.278 1.278 18 C 0.087 3.913 19 C -0.063 4.063 20 C -0.097 4.097 21 C -0.123 4.123 22 C -0.128 4.128 23 C -0.124 4.124 24 C -0.117 4.117 25 H 0.047 0.953 26 H 0.051 0.949 27 H 0.085 0.915 28 H 0.110 0.890 29 H 0.056 0.944 30 H 0.025 0.975 31 H 0.055 0.945 32 H 0.369 0.631 33 H 0.032 0.968 34 H 0.058 0.942 35 H 0.030 0.970 36 H 0.025 0.975 37 H 0.261 0.739 38 H 0.037 0.963 39 H 0.080 0.920 40 H 0.123 0.877 41 H 0.118 0.882 42 H 0.116 0.884 43 H 0.116 0.884 44 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.381 16.030 3.742 18.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.020 4.020 3 H 0.085 0.915 4 C -0.164 4.164 5 C 0.014 3.986 6 O -0.381 6.381 7 N -0.250 5.250 8 C -0.073 4.073 9 C -0.011 4.011 10 C -0.563 4.563 11 H 0.070 0.930 12 C -0.141 4.141 13 N -0.528 5.528 14 Si 0.717 3.283 15 H -0.204 1.204 16 H -0.213 1.213 17 H -0.203 1.203 18 C -0.041 4.041 19 C -0.064 4.064 20 C -0.116 4.116 21 C -0.141 4.141 22 C -0.147 4.147 23 C -0.142 4.142 24 C -0.136 4.136 25 H 0.066 0.934 26 H 0.070 0.930 27 H 0.104 0.896 28 H 0.128 0.872 29 H 0.075 0.925 30 H 0.044 0.956 31 H 0.074 0.926 32 H 0.214 0.786 33 H 0.050 0.950 34 H 0.076 0.924 35 H 0.047 0.953 36 H 0.043 0.957 37 H 0.070 0.930 38 H 0.055 0.945 39 H 0.098 0.902 40 H 0.141 0.859 41 H 0.136 0.864 42 H 0.134 0.866 43 H 0.134 0.866 44 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 7.196 15.564 3.412 17.483 hybrid contribution -0.679 -0.287 0.575 0.934 sum 6.517 15.278 3.987 17.082 Atomic orbital electron populations 1.22491 0.97066 1.04184 1.00560 1.21551 0.92946 0.96640 0.90827 0.91497 1.21926 0.93576 1.05328 0.95598 1.22040 0.95931 0.94946 0.85648 1.86513 1.26560 1.83727 1.41264 1.62365 1.48583 1.10745 1.03301 1.22554 0.92517 0.91729 1.00505 1.19308 0.97700 0.90687 0.93437 1.21168 1.31088 0.99573 1.04518 0.93025 1.24966 0.95767 0.98440 0.94948 1.69964 1.43022 1.28256 1.11559 0.86717 0.80714 0.82364 0.78511 1.20377 1.21330 1.20343 1.21087 0.93469 0.93998 0.95507 1.19892 0.95204 0.93944 0.97357 1.21064 0.91788 0.99384 0.99344 1.21135 0.98512 0.94823 0.99608 1.21069 0.97186 0.96343 1.00071 1.21057 0.92735 0.99709 1.00673 1.21066 0.98463 0.94630 0.99445 0.93425 0.92957 0.89605 0.87192 0.92502 0.95645 0.92643 0.78609 0.94957 0.92384 0.95256 0.95688 0.92952 0.94485 0.90199 0.85889 0.86393 0.86624 0.86556 0.86573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.99 7.82 37.16 0.29 -2.70 16 2 C 0.09 1.46 2.01 -67.71 -0.14 1.32 16 3 H 0.07 1.00 5.50 -51.93 -0.29 0.71 16 4 C -0.13 -2.36 4.92 -26.73 -0.13 -2.49 16 5 C 0.09 1.58 6.89 37.16 0.26 1.84 16 6 O -0.58 -10.15 13.66 -35.23 -0.48 -10.63 16 7 N -0.53 -9.00 3.94 -228.07 -0.90 -9.90 16 8 C 0.05 1.07 4.40 -3.82 -0.02 1.06 16 9 C 0.03 0.64 3.42 -27.88 -0.10 0.55 16 10 C -0.52 -14.59 9.10 -34.44 -0.31 -14.91 16 11 H 0.05 1.39 7.74 -52.48 -0.41 0.99 16 12 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 13 N -0.89 -26.71 13.29 55.43 0.74 -25.97 16 14 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 15 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 16 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 17 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 18 C 0.09 1.24 5.06 -4.97 -0.03 1.22 16 19 C -0.06 -0.84 5.03 -104.62 -0.53 -1.36 16 20 C -0.10 -1.24 9.73 -39.58 -0.38 -1.63 16 21 C -0.12 -1.38 10.05 -39.58 -0.40 -1.78 16 22 C -0.13 -1.36 10.05 -39.59 -0.40 -1.76 16 23 C -0.12 -1.34 10.05 -39.58 -0.40 -1.74 16 24 C -0.12 -1.42 8.31 -39.58 -0.33 -1.75 16 25 H 0.05 0.70 7.57 -51.93 -0.39 0.31 16 26 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.09 1.64 5.12 -51.93 -0.27 1.38 16 28 H 0.11 2.50 4.42 -51.93 -0.23 2.27 16 29 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 1.02 7.94 -51.93 -0.41 0.61 16 32 H 0.37 4.57 9.12 45.56 0.42 4.99 16 33 H 0.03 0.64 5.62 -51.93 -0.29 0.34 16 34 H 0.06 1.17 7.77 -51.92 -0.40 0.77 16 35 H 0.03 0.78 4.41 -51.93 -0.23 0.55 16 36 H 0.02 0.70 8.12 -51.93 -0.42 0.27 16 37 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 38 H 0.04 0.50 7.68 -51.93 -0.40 0.10 16 39 H 0.08 1.11 7.73 -51.93 -0.40 0.71 16 40 H 0.12 1.55 8.06 -52.48 -0.42 1.13 16 41 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 42 H 0.12 0.96 8.06 -52.48 -0.42 0.54 16 43 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 44 H 0.12 1.29 7.60 -52.49 -0.40 0.89 16 LS Contribution 345.34 15.07 5.20 5.20 Total: -1.00 -30.99 345.34 -9.38 -40.37 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: -6.22 Total: 6.80 kcal Atomic # 6 Polarization: -19.79 SS G_CDS: -2.70 Total: -22.49 kcal Atomic # 7 Polarization: -35.71 SS G_CDS: -0.16 Total: -35.87 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: -0.48 Total: -10.63 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.99 -9.38 -40.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093303517.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.506 kcal (2) G-P(sol) polarization free energy of solvation -30.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds