Wall clock time and date at job start Mon Mar 30 2020 01:45:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.46846 * 2 1 4 4 C 1.52992 * 109.47250 * 239.99657 * 2 1 3 5 5 C 1.53005 * 109.47113 * 173.46336 * 4 2 1 6 6 O 1.42898 * 109.47151 * 185.01355 * 5 4 2 7 7 N 1.46899 * 109.46963 * 119.99724 * 2 1 3 8 8 C 1.46902 * 111.00036 * 31.85731 * 7 2 1 9 9 C 1.53000 * 109.46964 * 69.42913 * 8 7 2 10 10 C 1.50701 * 109.46883 * 173.00456 * 9 8 7 11 11 H 1.08007 * 120.00360 * 0.02562 * 10 9 8 12 12 C 1.37872 * 120.00137 * 179.97438 * 10 9 8 13 13 N 1.31515 * 119.99781 * 0.02562 * 12 10 9 14 14 Si 1.86796 * 120.00222 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.47049 * 60.00113 * 14 12 10 16 16 H 1.48507 * 109.47468 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47259 * 299.99884 * 14 12 10 18 18 C 1.46902 * 110.99953 * 267.90417 * 7 2 1 19 19 C 1.50706 * 109.46866 * 287.45814 * 18 7 2 20 20 C 1.38234 * 120.00103 * 275.75551 * 19 18 7 21 21 C 1.38239 * 119.99928 * 179.76955 * 20 19 18 22 22 C 1.38234 * 119.99768 * 0.50570 * 21 20 19 23 23 C 1.38231 * 120.00214 * 359.74586 * 22 21 20 24 24 C 1.38234 * 119.99729 * 96.03077 * 19 18 7 25 25 H 1.09000 * 109.47308 * 297.31941 * 1 2 3 26 26 H 1.08992 * 109.47151 * 57.32653 * 1 2 3 27 27 H 1.09005 * 109.46683 * 177.32150 * 1 2 3 28 28 H 1.08999 * 109.47553 * 293.46430 * 4 2 1 29 29 H 1.09000 * 109.47296 * 53.46479 * 4 2 1 30 30 H 1.08998 * 109.46844 * 305.01601 * 5 4 2 31 31 H 1.08996 * 109.46651 * 65.01649 * 5 4 2 32 32 H 0.96696 * 114.00151 * 180.02562 * 6 5 4 33 33 H 1.08997 * 109.47010 * 309.42759 * 8 7 2 34 34 H 1.09007 * 109.46624 * 189.42702 * 8 7 2 35 35 H 1.08991 * 109.47039 * 292.99988 * 9 8 7 36 36 H 1.08991 * 109.47411 * 53.00671 * 9 8 7 37 37 H 0.97001 * 120.00044 * 179.97438 * 13 12 10 38 38 H 1.09000 * 109.47037 * 47.45786 * 18 7 2 39 39 H 1.09005 * 109.47225 * 167.46297 * 18 7 2 40 40 H 1.08003 * 119.99804 * 0.02562 * 20 19 18 41 41 H 1.07997 * 119.99552 * 180.23153 * 21 20 19 42 42 H 1.08003 * 119.99668 * 179.72822 * 22 21 20 43 43 H 1.07998 * 120.00161 * 179.97438 * 23 22 21 44 44 H 1.08001 * 120.00164 * 0.02562 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 3.5613 -0.5806 -1.3339 6 8 4.0250 -1.1525 -2.5586 7 7 2.0197 -0.6924 1.1995 8 6 1.0969 -1.7616 1.6037 9 6 1.1455 -2.8931 0.5750 10 6 0.3332 -4.0604 1.0736 11 1 -0.1680 -4.0011 2.0285 12 6 0.2288 -5.2038 0.3103 13 7 0.8386 -5.2760 -0.8527 14 14 -0.7775 -6.6510 0.9286 15 1 -2.1856 -6.2246 1.1303 16 1 -0.7305 -7.7493 -0.0699 17 1 -0.2158 -7.1300 2.2172 18 6 2.2425 0.2547 2.3001 19 6 3.4683 1.0821 2.0103 20 6 4.7220 0.5961 2.3313 21 6 5.8467 1.3530 2.0612 22 6 5.7170 2.6004 1.4797 23 6 4.4631 3.0886 1.1635 24 6 3.3386 2.3295 1.4288 25 1 -0.3634 0.4716 0.9130 26 1 -0.3633 0.5547 -0.8650 27 1 -0.3633 -1.0266 -0.0480 28 1 1.7754 -1.7772 -1.1926 29 1 1.5844 -0.2795 -2.1353 30 1 3.8309 0.4750 -1.3007 31 1 4.0215 -1.0998 -0.4933 32 1 4.9829 -1.0991 -2.6798 33 1 0.0833 -1.3647 1.6598 34 1 1.3914 -2.1456 2.5804 35 1 0.7339 -2.5418 -0.3711 36 1 2.1790 -3.2062 0.4278 37 1 0.7656 -6.0806 -1.3896 38 1 1.3765 0.9097 2.3966 39 1 2.3871 -0.2959 3.2296 40 1 4.8229 -0.3768 2.7893 41 1 6.8264 0.9716 2.3086 42 1 6.5955 3.1936 1.2727 43 1 4.3618 4.0633 0.7096 44 1 2.3589 2.7113 1.1825 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093303517.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:55 Heat of formation + Delta-G solvation = -43.898193 kcal Electronic energy + Delta-G solvation = -22421.641185 eV Core-core repulsion = 19337.952369 eV Total energy + Delta-G solvation = -3083.688816 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.71974 -39.28239 -37.56713 -35.22143 -33.85489 -32.65195 -31.68109 -30.75104 -29.61035 -26.95907 -25.59552 -24.23338 -23.40077 -22.38629 -21.92361 -20.47335 -18.51420 -18.15078 -17.51201 -17.25598 -16.50875 -16.25568 -16.05728 -15.73249 -15.64630 -15.10466 -14.62346 -14.33317 -14.15195 -14.13565 -13.60452 -13.46374 -13.30444 -13.10684 -13.06081 -12.89818 -12.66359 -12.48472 -12.12926 -12.01493 -11.84281 -11.76691 -11.73021 -11.59155 -11.22747 -10.94484 -10.67408 -10.39127 -9.70954 -9.58049 -9.02616 -8.13971 -6.24842 0.52249 0.59823 1.40343 1.42952 1.50695 2.42488 2.85092 3.18860 3.30100 3.41332 3.90830 4.02034 4.12036 4.17630 4.24833 4.34529 4.40193 4.44347 4.47679 4.56627 4.61466 4.64840 4.69416 4.76801 4.77497 4.88086 4.89974 5.08276 5.17250 5.19432 5.22759 5.25370 5.29983 5.41913 5.61146 5.65060 5.70662 5.79930 5.83429 5.93744 6.19318 6.22283 6.39098 6.42840 6.93772 6.96758 7.43502 8.96721 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.020955 B = 0.004726 C = 0.004465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.863076 B = 5923.831926 C = 6270.051518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.096 3.904 3 H 0.092 0.908 4 C -0.127 4.127 5 C 0.102 3.898 6 O -0.598 6.598 7 N -0.534 5.534 8 C 0.070 3.930 9 C 0.040 3.960 10 C -0.543 4.543 11 H 0.057 0.943 12 C 0.004 3.996 13 N -0.929 5.929 14 Si 0.959 3.041 15 H -0.267 1.267 16 H -0.286 1.286 17 H -0.268 1.268 18 C 0.090 3.910 19 C -0.079 4.079 20 C -0.115 4.115 21 C -0.128 4.128 22 C -0.127 4.127 23 C -0.125 4.125 24 C -0.125 4.125 25 H 0.064 0.936 26 H 0.069 0.931 27 H 0.049 0.951 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.050 0.950 31 H 0.038 0.962 32 H 0.390 0.610 33 H 0.039 0.961 34 H 0.055 0.945 35 H 0.014 0.986 36 H -0.016 1.016 37 H 0.261 0.739 38 H 0.050 0.950 39 H 0.078 0.922 40 H 0.113 0.887 41 H 0.134 0.866 42 H 0.141 0.859 43 H 0.141 0.859 44 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.563 18.083 4.451 20.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.013 4.013 3 H 0.110 0.890 4 C -0.164 4.164 5 C 0.025 3.975 6 O -0.406 6.406 7 N -0.258 5.258 8 C -0.057 4.057 9 C 0.003 3.997 10 C -0.582 4.582 11 H 0.075 0.925 12 C -0.194 4.194 13 N -0.569 5.569 14 Si 0.784 3.216 15 H -0.192 1.192 16 H -0.211 1.211 17 H -0.194 1.194 18 C -0.037 4.037 19 C -0.079 4.079 20 C -0.134 4.134 21 C -0.146 4.146 22 C -0.145 4.145 23 C -0.143 4.143 24 C -0.143 4.143 25 H 0.083 0.917 26 H 0.088 0.912 27 H 0.068 0.932 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.069 0.931 31 H 0.056 0.944 32 H 0.239 0.761 33 H 0.057 0.943 34 H 0.073 0.927 35 H 0.032 0.968 36 H 0.002 0.998 37 H 0.070 0.930 38 H 0.068 0.932 39 H 0.096 0.904 40 H 0.132 0.868 41 H 0.152 0.848 42 H 0.159 0.841 43 H 0.159 0.841 44 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 7.394 17.635 4.137 19.565 hybrid contribution -0.637 -0.864 0.320 1.120 sum 6.757 16.771 4.457 18.622 Atomic orbital electron populations 1.22410 0.96787 1.02306 1.02280 1.21523 0.93096 0.97211 0.89436 0.88969 1.21873 0.94921 1.02540 0.97115 1.21892 0.94751 0.95929 0.84938 1.86465 1.28843 1.84032 1.41265 1.62186 1.47629 1.11351 1.04637 1.22168 0.93672 0.91426 0.98439 1.19076 0.94478 0.91887 0.94265 1.21663 1.31149 1.00687 1.04709 0.92459 1.25879 0.96925 1.01562 0.95025 1.70124 1.44700 1.29070 1.12994 0.85601 0.79382 0.78545 0.78093 1.19191 1.21116 1.19351 1.21093 0.94774 0.93621 0.94200 1.19804 0.94580 0.94615 0.98908 1.21140 0.92535 0.99514 1.00192 1.21376 0.98734 0.95142 0.99343 1.21424 0.98217 0.96050 0.98855 1.21387 0.92356 1.00520 0.99994 1.21237 0.99590 0.94213 0.99288 0.91683 0.91218 0.93192 0.91971 0.92114 0.93149 0.94403 0.76095 0.94283 0.92673 0.96850 0.99769 0.93035 0.93167 0.90385 0.86850 0.84786 0.84069 0.84105 0.85485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.67 7.82 71.98 0.56 -5.11 16 2 C 0.10 3.08 2.01 44.92 0.09 3.17 16 3 H 0.09 2.54 5.50 -2.39 -0.01 2.52 16 4 C -0.13 -4.80 4.92 30.59 0.15 -4.65 16 5 C 0.10 3.52 6.89 71.98 0.50 4.02 16 6 O -0.60 -21.07 13.66 -148.98 -2.03 -23.10 16 7 N -0.53 -18.35 3.94 -875.49 -3.45 -21.80 16 8 C 0.07 2.89 4.40 86.30 0.38 3.27 16 9 C 0.04 2.11 3.42 29.85 0.10 2.22 16 10 C -0.54 -31.11 9.10 25.60 0.23 -30.88 16 11 H 0.06 3.13 7.74 -2.91 -0.02 3.11 16 12 C 0.00 0.24 5.46 84.65 0.46 0.70 16 13 N -0.93 -57.85 13.29 21.45 0.28 -57.57 16 14 Si 0.96 44.97 29.54 68.60 2.03 47.00 16 15 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 16 H -0.29 -13.20 7.11 99.48 0.71 -12.50 16 17 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 18 C 0.09 2.49 5.06 85.56 0.43 2.92 16 19 C -0.08 -1.96 5.03 -19.86 -0.10 -2.06 16 20 C -0.12 -2.85 9.73 22.27 0.22 -2.63 16 21 C -0.13 -2.62 10.05 22.27 0.22 -2.40 16 22 C -0.13 -2.28 10.05 22.27 0.22 -2.06 16 23 C -0.12 -2.27 10.05 22.27 0.22 -2.05 16 24 C -0.12 -2.66 8.31 22.27 0.18 -2.47 16 25 H 0.06 1.80 7.57 -2.39 -0.02 1.79 16 26 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 27 H 0.05 1.95 5.12 -2.38 -0.01 1.94 16 28 H 0.06 3.00 4.42 -2.39 -0.01 2.99 16 29 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 30 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.04 1.43 7.94 -2.39 -0.02 1.41 16 32 H 0.39 9.42 9.12 -74.06 -0.68 8.75 16 33 H 0.04 1.55 5.62 -2.39 -0.01 1.54 16 34 H 0.05 2.27 7.77 -2.38 -0.02 2.25 16 35 H 0.01 0.76 4.41 -2.39 -0.01 0.75 16 36 H -0.02 -0.97 8.12 -2.39 -0.02 -0.99 16 37 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 38 H 0.05 1.25 7.68 -2.39 -0.02 1.23 16 39 H 0.08 2.15 7.73 -2.38 -0.02 2.13 16 40 H 0.11 2.91 8.06 -2.91 -0.02 2.89 16 41 H 0.13 2.21 8.06 -2.91 -0.02 2.19 16 42 H 0.14 1.78 8.06 -2.91 -0.02 1.75 16 43 H 0.14 1.85 8.06 -2.91 -0.02 1.83 16 44 H 0.13 2.38 7.60 -2.91 -0.02 2.36 16 Total: -1.00 -69.05 345.34 1.02 -68.03 By element: Atomic # 1 Polarization: 25.15 SS G_CDS: 0.31 Total: 25.46 kcal Atomic # 6 Polarization: -41.90 SS G_CDS: 3.88 Total: -38.02 kcal Atomic # 7 Polarization: -76.20 SS G_CDS: -3.16 Total: -79.36 kcal Atomic # 8 Polarization: -21.07 SS G_CDS: -2.03 Total: -23.10 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -69.05 1.02 -68.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093303517.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.130 kcal (2) G-P(sol) polarization free energy of solvation -69.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds