Wall clock time and date at job start Mon Mar 30 2020 02:13:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.46906 * 110.99591 * 2 1 4 4 C 1.52991 * 109.47272 * 293.95049 * 3 2 1 5 5 C 1.53006 * 109.47315 * 180.02562 * 4 3 2 6 6 C 1.50697 * 109.47404 * 180.02562 * 5 4 3 7 7 H 1.08003 * 119.99891 * 0.02562 * 6 5 4 8 8 C 1.37871 * 119.99885 * 180.02562 * 6 5 4 9 9 N 1.31513 * 120.00209 * 359.97438 * 8 6 5 10 10 Si 1.86808 * 120.00030 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47030 * 89.99840 * 10 8 6 12 12 H 1.48494 * 109.46999 * 209.99693 * 10 8 6 13 13 H 1.48495 * 109.46934 * 330.00124 * 10 8 6 14 14 C 1.46900 * 110.99890 * 123.95361 * 2 1 3 15 15 C 1.52995 * 109.46922 * 66.04746 * 14 2 1 16 16 C 1.53001 * 109.47181 * 179.97438 * 15 14 2 17 17 O 1.42902 * 109.47386 * 180.02562 * 16 15 14 18 18 C 1.35898 * 116.99694 * 180.02562 * 17 16 15 19 19 C 1.38735 * 120.05254 * 179.97438 * 18 17 16 20 20 C 1.38144 * 119.94607 * 179.97438 * 19 18 17 21 21 C 1.38266 * 120.05233 * 0.02562 * 20 19 18 22 22 C 1.38269 * 120.11595 * 359.95530 * 21 20 19 23 23 C 1.38142 * 120.04935 * 0.04230 * 22 21 20 24 24 H 1.09000 * 109.47130 * 296.04910 * 1 2 3 25 25 H 1.08997 * 109.46980 * 56.04450 * 1 2 3 26 26 H 1.09001 * 109.47146 * 176.04472 * 1 2 3 27 27 H 1.08998 * 109.47114 * 53.95587 * 3 2 1 28 28 H 1.09000 * 109.46412 * 173.95103 * 3 2 1 29 29 H 1.08998 * 109.47491 * 300.00308 * 4 3 2 30 30 H 1.09000 * 109.47358 * 60.00634 * 4 3 2 31 31 H 1.08998 * 109.46905 * 300.00437 * 5 4 3 32 32 H 1.09000 * 109.46577 * 59.99927 * 5 4 3 33 33 H 0.97001 * 120.00312 * 180.02562 * 9 8 6 34 34 H 1.08999 * 109.47137 * 306.04556 * 14 2 1 35 35 H 1.08993 * 109.46842 * 186.04580 * 14 2 1 36 36 H 1.08999 * 109.47370 * 59.99952 * 15 14 2 37 37 H 1.09006 * 109.47017 * 299.99794 * 15 14 2 38 38 H 1.08999 * 109.46920 * 59.99785 * 16 15 14 39 39 H 1.08998 * 109.47220 * 300.00155 * 16 15 14 40 40 H 1.08002 * 120.02704 * 359.70561 * 19 18 17 41 41 H 1.08001 * 119.97447 * 179.97438 * 20 19 18 42 42 H 1.08000 * 119.94089 * 179.97438 * 21 20 19 43 43 H 1.07992 * 119.97577 * 180.02562 * 22 21 20 44 44 H 1.08005 * 120.02748 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6315 2.0575 -1.3182 5 6 2.1803 3.4857 -1.3185 6 6 1.8213 4.1616 -2.6166 7 1 1.2577 3.6262 -3.3664 8 6 2.2123 5.4634 -2.8472 9 7 2.8982 6.1156 -1.9340 10 14 1.7667 6.3016 -4.4561 11 1 0.4551 6.9830 -4.3126 12 1 2.8094 7.3019 -4.7985 13 1 1.6813 5.2860 -5.5361 14 6 1.9955 -0.7660 1.1376 15 6 1.6315 -2.2426 0.9703 16 6 2.1803 -3.0405 2.1548 17 8 1.8409 -4.4198 1.9983 18 6 2.2563 -5.2717 2.9722 19 6 1.9611 -6.6244 2.8843 20 6 2.3849 -7.4885 3.8753 21 6 3.1023 -7.0061 4.9544 22 6 3.3981 -5.6584 5.0441 23 6 2.9766 -4.7903 4.0557 24 1 -0.3633 0.4513 0.9233 25 1 -0.3633 0.5740 -0.8524 26 1 -0.3633 -1.0252 -0.0709 27 1 1.5611 1.9274 0.8309 28 1 3.0797 1.3444 0.1083 29 1 2.0659 1.5016 -2.1491 30 1 0.5472 2.0846 -1.4265 31 1 1.7463 4.0418 -0.4875 32 1 3.2646 3.4583 -1.2104 33 1 3.1730 7.0316 -2.0961 34 1 1.5612 -0.3872 2.0628 35 1 3.0797 -0.6611 1.1756 36 1 2.0659 -2.6213 0.0451 37 1 0.5472 -2.3474 0.9323 38 1 1.7463 -2.6619 3.0802 39 1 3.2646 -2.9356 2.1924 40 1 1.3966 -7.0009 2.0440 41 1 2.1550 -8.5416 3.8076 42 1 3.4324 -7.6832 5.7283 43 1 3.9589 -5.2841 5.8877 44 1 3.2075 -3.7376 4.1264 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000102397201.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:37 Heat of formation + Delta-G solvation = -28.873341 kcal Electronic energy + Delta-G solvation = -20066.210065 eV Core-core repulsion = 16983.172776 eV Total energy + Delta-G solvation = -3083.037289 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.37925 -38.13883 -37.45907 -34.09568 -32.73024 -31.36283 -30.92527 -29.85897 -27.14996 -26.71283 -24.56645 -23.04326 -22.45323 -21.59168 -20.73340 -19.84891 -18.49242 -16.59840 -16.51919 -16.28088 -16.05079 -15.30616 -15.15401 -14.77883 -14.40334 -14.08030 -14.01631 -13.76744 -13.47736 -13.22106 -12.59605 -12.29170 -12.18024 -11.89812 -11.79093 -11.72307 -11.39608 -11.32748 -11.21483 -11.01568 -10.79864 -10.67971 -10.51813 -10.46804 -9.59989 -9.34137 -9.32013 -9.04443 -8.51007 -8.32826 -8.11309 -5.98163 -4.00103 1.00354 1.12991 2.85570 3.33300 3.39384 3.43376 3.46972 4.13534 4.47757 4.48992 4.56393 4.65660 4.79599 4.83372 4.96836 5.05279 5.07453 5.18487 5.24171 5.36938 5.37623 5.45465 5.52181 5.64606 5.67058 5.82883 5.86741 5.95796 5.99916 6.07502 6.08681 6.17755 6.19977 6.32330 6.45845 6.70803 6.77358 7.11788 7.14678 7.33143 7.36955 7.70193 7.85035 8.02336 8.45848 9.07098 9.63821 11.13275 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.056444 B = 0.002011 C = 0.001973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 495.951398 B =13921.036139 C =14190.532257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.542 5.542 3 C 0.056 3.944 4 C -0.105 4.105 5 C 0.021 3.979 6 C -0.518 4.518 7 H 0.055 0.945 8 C 0.055 3.945 9 N -0.897 5.897 10 Si 0.892 3.108 11 H -0.281 1.281 12 H -0.287 1.287 13 H -0.274 1.274 14 C 0.058 3.942 15 C -0.115 4.115 16 C 0.061 3.939 17 O -0.314 6.314 18 C 0.133 3.867 19 C -0.155 4.155 20 C -0.082 4.082 21 C -0.163 4.163 22 C -0.080 4.080 23 C -0.210 4.210 24 H 0.021 0.979 25 H 0.076 0.924 26 H 0.063 0.937 27 H 0.029 0.971 28 H 0.069 0.931 29 H 0.056 0.944 30 H 0.048 0.952 31 H 0.013 0.987 32 H 0.016 0.984 33 H 0.260 0.740 34 H 0.032 0.968 35 H 0.075 0.925 36 H 0.083 0.917 37 H 0.074 0.926 38 H 0.061 0.939 39 H 0.064 0.936 40 H 0.130 0.870 41 H 0.128 0.872 42 H 0.122 0.878 43 H 0.124 0.876 44 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.078 -24.945 14.174 28.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.266 5.266 3 C -0.071 4.071 4 C -0.143 4.143 5 C -0.016 4.016 6 C -0.556 4.556 7 H 0.073 0.927 8 C -0.146 4.146 9 N -0.536 5.536 10 Si 0.720 3.280 11 H -0.207 1.207 12 H -0.212 1.212 13 H -0.199 1.199 14 C -0.070 4.070 15 C -0.153 4.153 16 C -0.014 4.014 17 O -0.227 6.227 18 C 0.088 3.912 19 C -0.174 4.174 20 C -0.100 4.100 21 C -0.182 4.182 22 C -0.099 4.099 23 C -0.229 4.229 24 H 0.040 0.960 25 H 0.095 0.905 26 H 0.082 0.918 27 H 0.047 0.953 28 H 0.088 0.912 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.031 0.969 32 H 0.034 0.966 33 H 0.069 0.931 34 H 0.050 0.950 35 H 0.094 0.906 36 H 0.102 0.898 37 H 0.092 0.908 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.148 0.852 41 H 0.146 0.854 42 H 0.140 0.860 43 H 0.142 0.858 44 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -0.945 -25.021 13.592 28.490 hybrid contribution -0.332 1.164 0.129 1.217 sum -1.277 -23.857 13.721 27.551 Atomic orbital electron populations 1.22479 0.87786 1.01579 1.01031 1.62015 1.07873 1.15265 1.41425 1.22318 0.99534 0.85987 0.99256 1.21662 1.00101 0.98179 0.94380 1.19079 0.96239 0.89326 0.96984 1.21254 1.34637 0.97617 1.02114 0.92662 1.25033 0.95238 0.97532 0.96763 1.69965 1.38360 1.11261 1.34046 0.86593 0.78056 0.79332 0.84022 1.20720 1.21246 1.19851 1.21947 1.00499 0.92203 0.92382 1.21535 1.02246 0.93827 0.97719 1.22823 1.00170 0.78646 0.99786 1.86071 1.73842 1.18663 1.44156 1.19074 0.93804 0.90353 0.87987 1.20488 1.04972 0.90453 1.01486 1.20978 0.96445 0.99379 0.93188 1.21068 1.02030 0.95677 0.99393 1.20974 0.97802 0.93326 0.97756 1.21325 1.04378 1.00915 0.96304 0.95995 0.90495 0.91818 0.95292 0.91231 0.92557 0.93379 0.96856 0.96603 0.93061 0.94960 0.90606 0.89817 0.90756 0.92086 0.91783 0.85198 0.85430 0.85997 0.85826 0.85386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.13 60.07 0.55 0.81 16 2 N -0.54 -8.06 4.76 -242.92 -1.16 -9.21 16 3 C 0.06 0.98 4.96 -3.83 -0.02 0.96 16 4 C -0.11 -2.21 5.08 -26.73 -0.14 -2.34 16 5 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 6 C -0.52 -14.87 9.11 -34.44 -0.31 -15.19 16 7 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 8 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 9 N -0.90 -27.19 13.29 55.43 0.74 -26.45 16 10 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 13 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 14 C 0.06 0.69 4.96 -3.83 -0.02 0.67 16 15 C -0.12 -1.21 5.51 -26.73 -0.15 -1.35 16 16 C 0.06 0.57 4.74 37.16 0.18 0.75 16 17 O -0.31 -3.50 10.14 -19.42 -0.20 -3.70 16 18 C 0.13 1.38 6.69 -39.22 -0.26 1.12 16 19 C -0.16 -1.43 9.99 -39.43 -0.39 -1.82 16 20 C -0.08 -0.62 10.04 -39.61 -0.40 -1.02 16 21 C -0.16 -1.21 10.04 -39.56 -0.40 -1.61 16 22 C -0.08 -0.64 10.04 -39.61 -0.40 -1.03 16 23 C -0.21 -1.91 9.04 -39.44 -0.36 -2.27 16 24 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 25 H 0.08 1.12 6.30 -51.93 -0.33 0.80 16 26 H 0.06 0.75 6.47 -51.93 -0.34 0.41 16 27 H 0.03 0.51 8.12 -51.93 -0.42 0.09 16 28 H 0.07 1.20 7.93 -51.93 -0.41 0.79 16 29 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 30 H 0.05 0.99 6.47 -51.93 -0.34 0.65 16 31 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 34 H 0.03 0.37 8.12 -51.93 -0.42 -0.06 16 35 H 0.08 0.86 7.93 -51.93 -0.41 0.45 16 36 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.07 0.78 6.55 -51.93 -0.34 0.44 16 38 H 0.06 0.51 7.66 -51.93 -0.40 0.12 16 39 H 0.06 0.55 7.66 -51.93 -0.40 0.15 16 40 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 41 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 42 H 0.12 0.64 8.06 -52.49 -0.42 0.21 16 43 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 44 H 0.13 1.00 6.30 -52.48 -0.33 0.67 16 LS Contribution 357.31 15.07 5.38 5.38 Total: -1.00 -31.34 357.31 -10.09 -41.43 By element: Atomic # 1 Polarization: 3.58 SS G_CDS: -7.48 Total: -3.90 kcal Atomic # 6 Polarization: -18.06 SS G_CDS: -2.35 Total: -20.41 kcal Atomic # 7 Polarization: -35.25 SS G_CDS: -0.42 Total: -35.67 kcal Atomic # 8 Polarization: -3.50 SS G_CDS: -0.20 Total: -3.70 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.34 -10.09 -41.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000102397201.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.554 kcal (2) G-P(sol) polarization free energy of solvation -31.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds