Wall clock time and date at job start Mon Mar 30 2020 01:48:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.47145 * 2 1 4 4 C 1.50707 * 109.47112 * 240.00854 * 2 1 3 5 5 H 1.07998 * 120.00049 * 239.99769 * 4 2 1 6 6 C 1.37881 * 119.99925 * 59.99507 * 4 2 1 7 7 N 1.31517 * 119.99779 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 119.99556 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47510 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.47200 * 120.00398 * 8 6 4 11 11 H 1.48505 * 109.46878 * 239.99713 * 8 6 4 12 12 N 1.46497 * 109.47313 * 120.00897 * 2 1 3 13 13 C 1.34777 * 119.99525 * 274.99614 * 12 2 1 14 14 O 1.21283 * 120.00463 * 0.02562 * 13 12 2 15 15 C 1.50700 * 119.99675 * 179.72583 * 13 12 2 16 16 C 1.52998 * 109.47092 * 300.27576 * 15 13 12 17 17 C 1.53005 * 109.47342 * 180.02562 * 16 15 13 18 18 C 1.52996 * 109.46953 * 60.00128 * 17 16 15 19 19 C 1.52996 * 109.47334 * 60.00278 * 18 17 16 20 20 C 1.53005 * 109.46874 * 299.99770 * 19 18 17 21 21 C 1.52996 * 109.46952 * 60.00394 * 20 19 18 22 22 C 1.52990 * 109.47447 * 299.99923 * 20 19 18 23 23 C 1.53004 * 109.47208 * 180.27843 * 15 13 12 24 24 C 1.52997 * 109.47000 * 179.97438 * 23 15 13 25 25 H 1.08998 * 109.46617 * 299.99415 * 1 2 3 26 26 H 1.09003 * 109.47371 * 59.99288 * 1 2 3 27 27 H 1.09002 * 109.46839 * 179.97438 * 1 2 3 28 28 H 0.97001 * 119.99544 * 179.97438 * 7 6 4 29 29 H 0.97000 * 120.00580 * 95.00360 * 12 2 1 30 30 H 1.08998 * 109.47585 * 60.27844 * 15 13 12 31 31 H 1.09004 * 109.47239 * 60.00118 * 16 15 13 32 32 H 1.08994 * 109.47101 * 180.02562 * 17 16 15 33 33 H 1.09006 * 109.46726 * 300.00303 * 17 16 15 34 34 H 1.09005 * 109.47125 * 180.02562 * 18 17 16 35 35 H 1.09004 * 109.47074 * 180.02562 * 19 18 17 36 36 H 1.08994 * 109.47281 * 59.99689 * 19 18 17 37 37 H 1.09006 * 109.46726 * 179.97438 * 20 19 18 38 38 H 1.09000 * 109.47764 * 59.99520 * 21 20 19 39 39 H 1.09005 * 109.47129 * 180.02562 * 21 20 19 40 40 H 1.09004 * 109.47351 * 300.00148 * 22 20 19 41 41 H 1.08996 * 109.47567 * 180.02562 * 22 20 19 42 42 H 1.09000 * 109.46887 * 300.00372 * 23 15 13 43 43 H 1.09001 * 109.47109 * 60.00906 * 24 23 15 44 44 H 1.09004 * 109.46774 * 179.97438 * 24 23 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5883 -1.1317 6 6 1.6992 -0.2390 -2.4829 7 7 0.9434 0.8305 -2.6033 8 14 2.3213 -1.1199 -4.0081 9 1 3.1465 -2.2865 -3.6041 10 1 1.1660 -1.5861 -4.8163 11 1 3.1464 -0.1867 -4.8166 12 7 2.0184 -0.6908 1.1960 13 6 2.1472 -0.0185 2.3570 14 8 1.8583 1.1582 2.4118 15 6 2.6437 -0.7305 3.5889 16 6 1.6978 -1.8846 3.9269 17 6 2.2015 -2.6072 5.1780 18 6 2.2472 -1.6253 6.3504 19 6 0.8435 -1.0749 6.6098 20 6 0.3398 -0.3523 5.3587 21 6 0.2939 -1.3343 4.1864 22 6 1.2855 0.8017 5.0207 23 6 2.6899 0.2511 4.7616 24 6 3.1934 -0.4720 6.0124 25 1 -0.3632 0.5137 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 0.7093 1.1622 -3.4843 29 1 2.2492 -1.6319 1.1524 30 1 3.6437 -1.1227 3.4038 31 1 1.6648 -2.5840 3.0915 32 1 1.5279 -3.4297 5.4185 33 1 3.2017 -2.9993 4.9932 34 1 2.6065 -2.1399 7.2416 35 1 0.8762 -0.3750 7.4448 36 1 0.1696 -1.8971 6.8506 37 1 -0.6606 0.0394 5.5434 38 1 -0.3799 -2.1566 4.4271 39 1 -0.0645 -0.8194 3.2949 40 1 1.3182 1.5013 5.8560 41 1 0.9265 1.3168 4.1298 42 1 3.3637 1.0734 4.5208 43 1 4.1934 -0.8643 5.8275 44 1 3.2267 0.2275 6.8477 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000110489111.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:56 Heat of formation + Delta-G solvation = -75.680496 kcal Electronic energy + Delta-G solvation = -23300.704506 eV Core-core repulsion = 20215.637506 eV Total energy + Delta-G solvation = -3085.067000 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.56183 -38.26523 -34.79965 -32.96948 -32.49858 -32.27777 -31.97003 -28.88269 -26.13974 -25.71498 -25.21772 -22.23132 -21.38670 -21.25947 -20.63994 -19.25495 -17.81615 -16.58812 -15.58488 -15.20232 -15.03249 -14.82522 -14.33589 -14.21427 -13.67614 -13.43671 -13.20531 -13.06717 -12.92028 -12.51338 -12.36598 -12.31918 -12.16343 -11.73217 -11.14897 -11.01473 -10.97260 -10.84250 -10.78497 -10.75008 -10.70102 -10.42015 -10.27389 -10.22186 -9.77403 -9.54025 -9.51011 -9.00837 -8.67119 -8.47566 -7.81534 -6.10567 -4.19437 3.24244 3.32108 3.34799 3.49361 4.14407 4.39530 4.56801 4.62423 4.75444 5.15896 5.19133 5.21742 5.25732 5.30887 5.37347 5.43692 5.46345 5.48406 5.54804 5.74729 5.79436 5.85002 5.88896 5.98619 6.07074 6.10353 6.12768 6.15194 6.18723 6.22145 6.46603 6.56838 6.62270 6.65811 6.82841 6.88507 7.02078 7.19261 7.53304 7.61951 7.73287 7.95712 8.18460 8.74548 8.82785 9.23012 9.48909 10.95388 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.034220 B = 0.004644 C = 0.004530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.036219 B = 6027.237779 C = 6179.364644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.264 3.736 3 H 0.047 0.953 4 C -0.532 4.532 5 H 0.060 0.940 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.900 3.100 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.710 5.710 13 C 0.509 3.491 14 O -0.552 6.552 15 C -0.099 4.099 16 C -0.075 4.075 17 C -0.105 4.105 18 C -0.085 4.085 19 C -0.106 4.106 20 C -0.085 4.085 21 C -0.110 4.110 22 C -0.120 4.120 23 C -0.061 4.061 24 C -0.108 4.108 25 H 0.014 0.986 26 H 0.088 0.912 27 H 0.025 0.975 28 H 0.263 0.737 29 H 0.386 0.614 30 H 0.087 0.913 31 H 0.073 0.927 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.065 0.935 35 H 0.058 0.942 36 H 0.057 0.943 37 H 0.064 0.936 38 H 0.059 0.941 39 H 0.068 0.932 40 H 0.051 0.949 41 H 0.096 0.904 42 H 0.073 0.927 43 H 0.059 0.941 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.536 -6.380 16.922 18.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.163 3.837 3 H 0.065 0.935 4 C -0.570 4.570 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.728 3.272 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.357 5.357 13 C 0.294 3.706 14 O -0.432 6.432 15 C -0.121 4.121 16 C -0.093 4.093 17 C -0.143 4.143 18 C -0.104 4.104 19 C -0.144 4.144 20 C -0.103 4.103 21 C -0.147 4.147 22 C -0.157 4.157 23 C -0.080 4.080 24 C -0.146 4.146 25 H 0.033 0.967 26 H 0.107 0.893 27 H 0.044 0.956 28 H 0.073 0.927 29 H 0.219 0.781 30 H 0.105 0.895 31 H 0.092 0.908 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.083 0.917 38 H 0.078 0.922 39 H 0.086 0.914 40 H 0.070 0.930 41 H 0.115 0.885 42 H 0.091 0.909 43 H 0.078 0.922 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.236 -5.410 16.773 17.668 hybrid contribution 0.432 -0.964 -0.971 1.435 sum 1.668 -6.374 15.802 17.121 Atomic orbital electron populations 1.22055 0.98578 0.98954 1.00748 1.18701 0.90925 0.93920 0.80201 0.93530 1.21274 1.32216 1.13113 0.90413 0.92139 1.24890 0.94850 0.94960 0.99042 1.69919 1.36031 1.22495 1.23690 0.86414 0.78595 0.79537 0.82664 1.19768 1.20901 1.20906 1.46533 1.65131 1.13402 1.10625 1.20342 0.78312 0.87390 0.84550 1.90562 1.51408 1.16311 1.84882 1.21353 0.99973 0.96596 0.94181 1.20990 0.94905 0.95662 0.97776 1.21533 1.00927 0.97291 0.94537 1.21033 0.95715 0.96026 0.97616 1.21543 0.95976 0.99395 0.97469 1.21037 0.98817 0.95917 0.94561 1.21551 0.95905 0.98491 0.98789 1.21790 0.94282 0.96774 1.02835 1.20752 0.97868 0.96635 0.92739 1.21567 0.98178 0.97135 0.97691 0.96726 0.89320 0.95605 0.92693 0.78136 0.89522 0.90835 0.91941 0.91996 0.91697 0.92362 0.92453 0.91732 0.92238 0.91357 0.92977 0.88543 0.90896 0.92233 0.92048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.61 9.26 37.16 0.34 -3.27 16 2 C 0.26 6.74 2.56 -69.08 -0.18 6.57 16 3 H 0.05 1.38 7.58 -51.93 -0.39 0.99 16 4 C -0.53 -14.16 8.73 -34.44 -0.30 -14.46 16 5 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -25.05 11.32 55.43 0.63 -24.43 16 8 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 16 9 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 12 N -0.71 -14.75 4.96 -54.93 -0.27 -15.03 16 13 C 0.51 10.00 5.61 -10.98 -0.06 9.94 16 14 O -0.55 -12.82 13.32 5.55 0.07 -12.75 16 15 C -0.10 -1.47 2.28 -91.77 -0.21 -1.68 16 16 C -0.07 -0.96 2.62 -90.62 -0.24 -1.20 16 17 C -0.11 -1.11 5.19 -26.73 -0.14 -1.25 16 18 C -0.09 -0.88 3.19 -90.65 -0.29 -1.17 16 19 C -0.11 -1.13 5.19 -26.73 -0.14 -1.27 16 20 C -0.08 -1.09 3.19 -90.62 -0.29 -1.38 16 21 C -0.11 -1.51 4.97 -26.73 -0.13 -1.64 16 22 C -0.12 -1.75 4.90 -26.71 -0.13 -1.88 16 23 C -0.06 -0.86 2.37 -90.59 -0.21 -1.07 16 24 C -0.11 -1.20 5.19 -26.76 -0.14 -1.34 16 25 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.09 2.42 6.07 -51.93 -0.32 2.10 16 27 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 29 H 0.39 7.09 7.95 -40.82 -0.32 6.77 16 30 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.07 0.94 7.55 -51.93 -0.39 0.55 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.07 1.14 7.21 -51.93 -0.37 0.77 16 40 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.10 1.76 5.51 -51.93 -0.29 1.48 16 42 H 0.07 1.12 8.10 -51.93 -0.42 0.70 16 43 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 322.89 15.07 4.87 4.87 Total: -1.00 -29.25 322.89 -9.48 -38.73 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: -7.54 Total: 6.30 kcal Atomic # 6 Polarization: -11.21 SS G_CDS: -2.21 Total: -13.42 kcal Atomic # 7 Polarization: -39.81 SS G_CDS: 0.36 Total: -39.45 kcal Atomic # 8 Polarization: -12.82 SS G_CDS: 0.07 Total: -12.75 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -29.25 -9.48 -38.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110489111.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.946 kcal (2) G-P(sol) polarization free energy of solvation -29.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds