Wall clock time and date at job start Mon Mar 30 2020 02:16:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.37100 * 119.99811 * 2 1 4 4 H 1.07997 * 119.99971 * 155.85731 * 3 2 1 5 5 C 1.38957 * 119.99762 * 336.12577 * 3 2 1 6 6 N 1.31409 * 120.00162 * 348.09799 * 5 3 2 7 7 Si 1.86804 * 119.99658 * 168.10249 * 5 3 2 8 8 H 1.48494 * 109.47175 * 359.97438 * 7 5 3 9 9 H 1.48498 * 109.46807 * 119.99999 * 7 5 3 10 10 H 1.48494 * 109.46771 * 239.99822 * 7 5 3 11 11 C 1.34770 * 120.00034 * 179.97438 * 2 1 3 12 12 O 1.21297 * 120.00244 * 179.97438 * 11 2 1 13 13 C 1.50702 * 120.00091 * 0.02562 * 11 2 1 14 14 C 1.53000 * 109.46893 * 179.97438 * 13 11 2 15 15 C 1.52996 * 109.47275 * 60.00522 * 14 13 11 16 16 C 1.53001 * 109.47580 * 179.97438 * 15 14 13 17 17 C 1.52997 * 109.47064 * 59.99656 * 16 15 14 18 18 C 1.53000 * 109.47108 * 300.00040 * 17 16 15 19 19 C 1.53004 * 109.47363 * 300.00372 * 18 17 16 20 20 C 1.52997 * 109.47313 * 59.99753 * 19 18 17 21 21 C 1.53000 * 109.47108 * 300.00403 * 20 19 18 22 22 C 1.52999 * 109.46907 * 60.00086 * 20 19 18 23 23 C 1.52995 * 109.47764 * 299.99747 * 14 13 11 24 24 H 1.09005 * 109.47142 * 92.80994 * 1 2 3 25 25 H 1.08999 * 109.46840 * 212.80849 * 1 2 3 26 26 H 1.08995 * 109.47228 * 332.81103 * 1 2 3 27 27 H 0.97003 * 120.00221 * 179.97438 * 6 5 3 28 28 H 1.08994 * 109.47142 * 299.99721 * 13 11 2 29 29 H 1.08998 * 109.47336 * 60.00082 * 13 11 2 30 30 H 1.09008 * 109.47022 * 299.99805 * 15 14 13 31 31 H 1.09005 * 109.47427 * 59.99050 * 15 14 13 32 32 H 1.09000 * 109.47524 * 179.97438 * 16 15 14 33 33 H 1.09004 * 109.47195 * 180.02562 * 17 16 15 34 34 H 1.08995 * 109.47523 * 60.00258 * 17 16 15 35 35 H 1.09002 * 109.47520 * 179.97438 * 18 17 16 36 36 H 1.08994 * 109.46841 * 299.99708 * 19 18 17 37 37 H 1.09000 * 109.47189 * 179.97438 * 19 18 17 38 38 H 1.08995 * 109.47523 * 180.02562 * 20 19 18 39 39 H 1.08994 * 109.47241 * 179.97438 * 21 20 19 40 40 H 1.09004 * 109.46849 * 299.99913 * 21 20 19 41 41 H 1.09005 * 109.47172 * 180.02562 * 22 20 19 42 42 H 1.09000 * 109.47310 * 60.00229 * 22 20 19 43 43 H 1.09000 * 109.47103 * 300.00499 * 23 14 13 44 44 H 1.09009 * 109.46829 * 60.00010 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1596 1.2283 0.3825 5 6 1.5448 2.3392 -0.4871 6 7 0.4176 2.2557 -1.1573 7 14 2.3330 4.0064 -0.1891 8 1 3.5873 3.8294 0.5859 9 1 2.6421 4.6477 -1.4923 10 1 1.3960 4.8672 0.5764 11 6 2.1389 -1.1671 0.0005 12 8 3.3518 -1.1672 0.0001 13 6 1.3854 -2.4723 0.0005 14 6 2.3797 -3.6351 0.0005 15 6 3.2592 -3.5541 1.2498 16 6 4.2531 -4.7173 1.2502 17 6 5.1329 -4.6369 0.0010 18 6 4.2533 -4.7180 -1.2483 19 6 3.4878 -6.0428 -1.2480 20 6 2.6081 -6.1233 0.0012 21 6 3.4877 -6.0421 1.2505 22 6 1.6143 -4.9600 0.0008 23 6 3.2593 -3.5542 -1.2487 24 1 -0.3634 -0.0504 -1.0265 25 1 -0.3633 -0.8637 0.5568 26 1 -0.3633 0.9141 0.4695 27 1 -0.0055 3.0599 -1.4970 28 1 0.7585 -2.5298 0.8902 29 1 0.7591 -2.5303 -0.8897 30 1 3.8042 -2.6101 1.2499 31 1 2.6325 -3.6118 2.1398 32 1 4.8800 -4.6594 2.1400 33 1 5.8407 -5.4658 0.0010 34 1 5.6782 -3.6931 0.0008 35 1 4.8799 -4.6602 -2.1383 36 1 4.1958 -6.8714 -1.2478 37 1 2.8609 -6.1003 -2.1378 38 1 2.0631 -7.0672 0.0017 39 1 2.8609 -6.0990 2.1404 40 1 4.1957 -6.8709 1.2507 41 1 0.9878 -5.0170 0.8910 42 1 0.9876 -5.0177 -0.8892 43 1 2.6327 -3.6120 -2.1387 44 1 3.8043 -2.6102 -1.2487 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000112011321.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:43 Heat of formation + Delta-G solvation = -58.884913 kcal Electronic energy + Delta-G solvation = -23416.559451 eV Core-core repulsion = 20332.220762 eV Total energy + Delta-G solvation = -3084.338689 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.23814 -38.26616 -34.84495 -33.29005 -32.25326 -32.24523 -31.54900 -27.49088 -25.96561 -25.56551 -25.52051 -24.00832 -21.19675 -21.11938 -20.34042 -18.41212 -17.08742 -16.78871 -15.82060 -14.74213 -14.60175 -14.35566 -14.10609 -14.08887 -14.00877 -13.76431 -13.17592 -12.94628 -12.90798 -12.29208 -12.16600 -11.94509 -11.80080 -11.56799 -11.25654 -11.13382 -11.11436 -10.85329 -10.58385 -10.52654 -10.49152 -10.38205 -10.29842 -10.28217 -9.96479 -9.44555 -9.29212 -9.24495 -8.94476 -8.00049 -7.57196 -6.27205 -3.83266 3.17257 3.27370 3.34110 3.97908 4.17819 4.73554 4.78485 4.82006 5.04720 5.16758 5.39628 5.41241 5.52658 5.54964 5.55961 5.57510 5.67755 5.70018 5.71428 5.91105 6.00294 6.01712 6.07464 6.12198 6.20293 6.21765 6.25470 6.29026 6.31640 6.38427 6.44478 6.47004 6.49364 6.62260 6.80885 6.89030 6.89662 6.91530 7.10491 7.23085 7.28000 7.60920 8.21554 8.55739 9.26294 9.50646 10.08255 10.77484 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.033650 B = 0.004889 C = 0.004668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.893049 B = 5725.534575 C = 5997.001462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.113 3.887 2 N -0.451 5.451 3 C -0.302 4.302 4 H 0.097 0.903 5 C 0.028 3.972 6 N -0.885 5.885 7 Si 0.923 3.077 8 H -0.269 1.269 9 H -0.282 1.282 10 H -0.282 1.282 11 C 0.452 3.548 12 O -0.579 6.579 13 C -0.123 4.123 14 C -0.028 4.028 15 C -0.112 4.112 16 C -0.083 4.083 17 C -0.103 4.103 18 C -0.083 4.083 19 C -0.107 4.107 20 C -0.083 4.083 21 C -0.106 4.106 22 C -0.104 4.104 23 C -0.113 4.113 24 H 0.051 0.949 25 H 0.024 0.976 26 H 0.071 0.929 27 H 0.265 0.735 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.101 0.899 31 H 0.045 0.955 32 H 0.061 0.939 33 H 0.050 0.950 34 H 0.065 0.935 35 H 0.061 0.939 36 H 0.053 0.947 37 H 0.057 0.943 38 H 0.061 0.939 39 H 0.056 0.944 40 H 0.053 0.947 41 H 0.056 0.944 42 H 0.057 0.943 43 H 0.046 0.954 44 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.275 -14.315 2.224 14.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 N -0.169 5.169 3 C -0.431 4.431 4 H 0.115 0.885 5 C -0.174 4.174 6 N -0.525 5.525 7 Si 0.750 3.250 8 H -0.193 1.193 9 H -0.208 1.208 10 H -0.208 1.208 11 C 0.240 3.760 12 O -0.464 6.464 13 C -0.163 4.163 14 C -0.028 4.028 15 C -0.150 4.150 16 C -0.102 4.102 17 C -0.140 4.140 18 C -0.102 4.102 19 C -0.144 4.144 20 C -0.101 4.101 21 C -0.144 4.144 22 C -0.141 4.141 23 C -0.150 4.150 24 H 0.069 0.931 25 H 0.043 0.957 26 H 0.090 0.910 27 H 0.076 0.924 28 H 0.090 0.910 29 H 0.093 0.907 30 H 0.119 0.881 31 H 0.063 0.937 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.084 0.916 35 H 0.079 0.921 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.079 0.921 39 H 0.075 0.925 40 H 0.072 0.928 41 H 0.075 0.925 42 H 0.076 0.924 43 H 0.064 0.936 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 1.714 -14.147 2.139 14.410 hybrid contribution -0.108 0.873 -0.014 0.880 sum 1.606 -13.274 2.125 13.539 Atomic orbital electron populations 1.21452 0.81483 0.99485 1.00660 1.43629 1.05361 1.04935 1.63004 1.19672 1.00246 0.84232 1.38906 0.88487 1.25328 0.96600 1.00029 0.95451 1.70003 1.18568 1.29246 1.34678 0.85905 0.79198 0.81729 0.78124 1.19292 1.20825 1.20781 1.20063 0.88104 0.84770 0.83023 1.90356 1.13957 1.86671 1.55451 1.21628 0.98428 0.94056 1.02213 1.20063 0.94298 0.92134 0.96323 1.21823 0.97360 1.00024 0.95742 1.21025 0.96701 0.94960 0.97480 1.21470 0.96992 1.01160 0.94419 1.21037 0.96719 0.94958 0.97475 1.21546 0.98204 0.97332 0.97332 1.21004 0.96160 0.97795 0.95161 1.21546 0.98203 0.97332 0.97319 1.21610 0.96999 0.94402 1.01114 1.21830 0.97362 1.00006 0.95768 0.93093 0.95711 0.90979 0.92446 0.90955 0.90730 0.88131 0.93651 0.92094 0.93173 0.91641 0.92062 0.92786 0.92464 0.92064 0.92502 0.92781 0.92477 0.92412 0.93557 0.88072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.55 8.46 59.85 0.51 3.06 16 2 N -0.45 -11.49 3.01 -122.19 -0.37 -11.86 16 3 C -0.30 -8.42 9.25 -14.93 -0.14 -8.55 16 4 H 0.10 2.82 7.44 -52.49 -0.39 2.43 16 5 C 0.03 0.76 5.07 -17.47 -0.09 0.67 16 6 N -0.89 -23.85 10.75 55.50 0.60 -23.25 16 7 Si 0.92 20.92 29.57 -169.99 -5.03 15.90 16 8 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 9 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 10 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 11 C 0.45 10.62 7.04 -10.99 -0.08 10.54 16 12 O -0.58 -14.83 11.06 5.54 0.06 -14.77 16 13 C -0.12 -2.26 3.36 -27.88 -0.09 -2.35 16 14 C -0.03 -0.45 0.51 -154.51 -0.08 -0.53 16 15 C -0.11 -1.88 4.17 -26.73 -0.11 -1.99 16 16 C -0.08 -1.18 3.20 -90.62 -0.29 -1.47 16 17 C -0.10 -1.47 5.19 -26.73 -0.14 -1.61 16 18 C -0.08 -1.20 3.20 -90.59 -0.29 -1.49 16 19 C -0.11 -1.33 5.19 -26.73 -0.14 -1.47 16 20 C -0.08 -1.02 3.20 -90.62 -0.29 -1.31 16 21 C -0.11 -1.31 5.19 -26.73 -0.14 -1.45 16 22 C -0.10 -1.41 4.47 -26.73 -0.12 -1.53 16 23 C -0.11 -1.93 4.18 -26.71 -0.11 -2.04 16 24 H 0.05 1.18 7.77 -51.93 -0.40 0.78 16 25 H 0.02 0.46 6.55 -51.93 -0.34 0.12 16 26 H 0.07 1.72 6.83 -51.93 -0.35 1.37 16 27 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 28 H 0.07 1.23 7.40 -51.93 -0.38 0.84 16 29 H 0.07 1.32 8.11 -51.93 -0.42 0.90 16 30 H 0.10 2.04 5.51 -51.92 -0.29 1.76 16 31 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.10 2.11 5.51 -51.92 -0.29 1.83 16 LS Contribution 316.67 15.07 4.77 4.77 Total: -1.00 -28.63 316.67 -9.06 -37.69 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -7.50 Total: 3.04 kcal Atomic # 6 Polarization: -9.92 SS G_CDS: -1.60 Total: -11.52 kcal Atomic # 7 Polarization: -35.34 SS G_CDS: 0.23 Total: -35.11 kcal Atomic # 8 Polarization: -14.83 SS G_CDS: 0.06 Total: -14.77 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.03 Total: 15.90 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -28.63 -9.06 -37.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112011321.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.196 kcal (2) G-P(sol) polarization free energy of solvation -28.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds