Wall clock time and date at job start Mon Mar 30 2020 02:16:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.37100 * 119.99811 * 2 1 4 4 H 1.07997 * 119.99971 * 155.85731 * 3 2 1 5 5 C 1.38957 * 119.99762 * 336.12577 * 3 2 1 6 6 N 1.31409 * 120.00162 * 348.09799 * 5 3 2 7 7 Si 1.86804 * 119.99658 * 168.10249 * 5 3 2 8 8 H 1.48494 * 109.47175 * 359.97438 * 7 5 3 9 9 H 1.48498 * 109.46807 * 119.99999 * 7 5 3 10 10 H 1.48494 * 109.46771 * 239.99822 * 7 5 3 11 11 C 1.34770 * 120.00034 * 179.97438 * 2 1 3 12 12 O 1.21297 * 120.00244 * 179.97438 * 11 2 1 13 13 C 1.50702 * 120.00091 * 0.02562 * 11 2 1 14 14 C 1.53000 * 109.46893 * 179.97438 * 13 11 2 15 15 C 1.52996 * 109.47275 * 60.00522 * 14 13 11 16 16 C 1.53001 * 109.47580 * 179.97438 * 15 14 13 17 17 C 1.52997 * 109.47064 * 59.99656 * 16 15 14 18 18 C 1.53000 * 109.47108 * 300.00040 * 17 16 15 19 19 C 1.53004 * 109.47363 * 300.00372 * 18 17 16 20 20 C 1.52997 * 109.47313 * 59.99753 * 19 18 17 21 21 C 1.53000 * 109.47108 * 300.00403 * 20 19 18 22 22 C 1.52999 * 109.46907 * 60.00086 * 20 19 18 23 23 C 1.52995 * 109.47764 * 299.99747 * 14 13 11 24 24 H 1.09005 * 109.47142 * 92.80994 * 1 2 3 25 25 H 1.08999 * 109.46840 * 212.80849 * 1 2 3 26 26 H 1.08995 * 109.47228 * 332.81103 * 1 2 3 27 27 H 0.97003 * 120.00221 * 179.97438 * 6 5 3 28 28 H 1.08994 * 109.47142 * 299.99721 * 13 11 2 29 29 H 1.08998 * 109.47336 * 60.00082 * 13 11 2 30 30 H 1.09008 * 109.47022 * 299.99805 * 15 14 13 31 31 H 1.09005 * 109.47427 * 59.99050 * 15 14 13 32 32 H 1.09000 * 109.47524 * 179.97438 * 16 15 14 33 33 H 1.09004 * 109.47195 * 180.02562 * 17 16 15 34 34 H 1.08995 * 109.47523 * 60.00258 * 17 16 15 35 35 H 1.09002 * 109.47520 * 179.97438 * 18 17 16 36 36 H 1.08994 * 109.46841 * 299.99708 * 19 18 17 37 37 H 1.09000 * 109.47189 * 179.97438 * 19 18 17 38 38 H 1.08995 * 109.47523 * 180.02562 * 20 19 18 39 39 H 1.08994 * 109.47241 * 179.97438 * 21 20 19 40 40 H 1.09004 * 109.46849 * 299.99913 * 21 20 19 41 41 H 1.09005 * 109.47172 * 180.02562 * 22 20 19 42 42 H 1.09000 * 109.47310 * 60.00229 * 22 20 19 43 43 H 1.09000 * 109.47103 * 300.00499 * 23 14 13 44 44 H 1.09009 * 109.46829 * 60.00010 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1596 1.2283 0.3825 5 6 1.5448 2.3392 -0.4871 6 7 0.4176 2.2557 -1.1573 7 14 2.3330 4.0064 -0.1891 8 1 3.5873 3.8294 0.5859 9 1 2.6421 4.6477 -1.4923 10 1 1.3960 4.8672 0.5764 11 6 2.1389 -1.1671 0.0005 12 8 3.3518 -1.1672 0.0001 13 6 1.3854 -2.4723 0.0005 14 6 2.3797 -3.6351 0.0005 15 6 3.2592 -3.5541 1.2498 16 6 4.2531 -4.7173 1.2502 17 6 5.1329 -4.6369 0.0010 18 6 4.2533 -4.7180 -1.2483 19 6 3.4878 -6.0428 -1.2480 20 6 2.6081 -6.1233 0.0012 21 6 3.4877 -6.0421 1.2505 22 6 1.6143 -4.9600 0.0008 23 6 3.2593 -3.5542 -1.2487 24 1 -0.3634 -0.0504 -1.0265 25 1 -0.3633 -0.8637 0.5568 26 1 -0.3633 0.9141 0.4695 27 1 -0.0055 3.0599 -1.4970 28 1 0.7585 -2.5298 0.8902 29 1 0.7591 -2.5303 -0.8897 30 1 3.8042 -2.6101 1.2499 31 1 2.6325 -3.6118 2.1398 32 1 4.8800 -4.6594 2.1400 33 1 5.8407 -5.4658 0.0010 34 1 5.6782 -3.6931 0.0008 35 1 4.8799 -4.6602 -2.1383 36 1 4.1958 -6.8714 -1.2478 37 1 2.8609 -6.1003 -2.1378 38 1 2.0631 -7.0672 0.0017 39 1 2.8609 -6.0990 2.1404 40 1 4.1957 -6.8709 1.2507 41 1 0.9878 -5.0170 0.8910 42 1 0.9876 -5.0177 -0.8892 43 1 2.6327 -3.6120 -2.1387 44 1 3.8043 -2.6102 -1.2487 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000112011321.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:43 Heat of formation + Delta-G solvation = -73.322529 kcal Electronic energy + Delta-G solvation = -23417.185513 eV Core-core repulsion = 20332.220762 eV Total energy + Delta-G solvation = -3084.964751 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.45595 -40.06654 -36.73411 -34.71457 -33.58793 -33.39236 -33.30759 -29.14945 -27.78289 -26.69623 -26.67503 -25.91796 -22.29655 -22.25997 -21.78308 -20.07063 -18.84695 -18.17634 -17.68960 -16.54024 -16.17756 -16.00624 -15.46922 -15.28646 -15.19116 -15.09108 -14.55366 -14.43653 -14.13381 -13.72653 -13.51266 -13.35796 -13.24255 -13.14837 -12.90790 -12.79973 -12.66230 -12.57049 -12.23701 -12.10834 -11.71910 -11.64527 -11.63394 -11.47894 -11.44175 -10.94614 -10.70529 -10.46548 -10.40195 -9.77418 -9.56913 -8.30989 -5.95197 1.34997 1.39067 1.52887 2.12114 2.28775 3.11625 3.15445 3.67698 3.68131 3.76337 4.10025 4.20140 4.34751 4.40008 4.42165 4.46050 4.47535 4.50673 4.59898 4.62562 4.66459 4.81661 4.84263 4.85739 4.92030 5.01321 5.04410 5.06771 5.17671 5.22809 5.25325 5.27286 5.27772 5.34769 5.37706 5.45212 5.49306 5.61561 5.65203 5.68786 5.75501 5.92122 6.16542 6.54891 7.23630 7.55852 8.14734 8.72068 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.033650 B = 0.004889 C = 0.004668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.893049 B = 5725.534575 C = 5997.001462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.125 3.875 2 N -0.473 5.473 3 C -0.337 4.337 4 H 0.069 0.931 5 C -0.006 4.006 6 N -0.902 5.902 7 Si 0.986 3.014 8 H -0.275 1.275 9 H -0.277 1.277 10 H -0.266 1.266 11 C 0.444 3.556 12 O -0.606 6.606 13 C -0.115 4.115 14 C -0.027 4.027 15 C -0.111 4.111 16 C -0.083 4.083 17 C -0.103 4.103 18 C -0.083 4.083 19 C -0.102 4.102 20 C -0.081 4.081 21 C -0.101 4.101 22 C -0.100 4.100 23 C -0.112 4.112 24 H 0.039 0.961 25 H 0.064 0.936 26 H 0.053 0.947 27 H 0.271 0.729 28 H 0.092 0.908 29 H 0.084 0.916 30 H 0.053 0.947 31 H 0.050 0.950 32 H 0.063 0.937 33 H 0.074 0.926 34 H 0.033 0.967 35 H 0.060 0.940 36 H 0.074 0.926 37 H 0.063 0.937 38 H 0.090 0.910 39 H 0.066 0.934 40 H 0.074 0.926 41 H 0.070 0.930 42 H 0.065 0.935 43 H 0.044 0.956 44 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.304 -16.922 2.595 17.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.019 4.019 2 N -0.193 5.193 3 C -0.465 4.465 4 H 0.087 0.913 5 C -0.207 4.207 6 N -0.541 5.541 7 Si 0.810 3.190 8 H -0.199 1.199 9 H -0.203 1.203 10 H -0.191 1.191 11 C 0.234 3.766 12 O -0.493 6.493 13 C -0.155 4.155 14 C -0.027 4.027 15 C -0.148 4.148 16 C -0.101 4.101 17 C -0.140 4.140 18 C -0.102 4.102 19 C -0.139 4.139 20 C -0.100 4.100 21 C -0.139 4.139 22 C -0.137 4.137 23 C -0.149 4.149 24 H 0.057 0.943 25 H 0.082 0.918 26 H 0.072 0.928 27 H 0.081 0.919 28 H 0.111 0.889 29 H 0.103 0.897 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.082 0.918 33 H 0.093 0.907 34 H 0.052 0.948 35 H 0.079 0.921 36 H 0.093 0.907 37 H 0.082 0.918 38 H 0.108 0.892 39 H 0.085 0.915 40 H 0.093 0.907 41 H 0.089 0.911 42 H 0.084 0.916 43 H 0.063 0.937 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.725 -16.768 2.507 16.970 hybrid contribution 0.262 1.714 -0.150 1.740 sum 0.987 -15.054 2.357 15.269 Atomic orbital electron populations 1.21358 0.79887 1.00301 1.00316 1.43917 1.06504 1.04915 1.63991 1.19593 0.99928 0.86271 1.40709 0.91327 1.26050 0.97099 1.02817 0.94728 1.70076 1.19146 1.30327 1.34570 0.84981 0.78286 0.77602 0.78101 1.19937 1.20272 1.19104 1.21061 0.88182 0.86075 0.81266 1.90371 1.15644 1.87440 1.55857 1.21659 0.98688 0.91648 1.03479 1.20092 0.93937 0.93238 0.95470 1.21710 0.97776 0.99099 0.96244 1.21026 0.96310 0.95396 0.97401 1.21461 0.97342 1.00468 0.94736 1.21032 0.96305 0.95347 0.97487 1.21530 0.98495 0.96000 0.97918 1.21058 0.95864 0.98243 0.94797 1.21530 0.98477 0.96026 0.97840 1.21589 0.97229 0.92677 1.02205 1.21716 0.97799 0.99061 0.96329 0.94259 0.91753 0.92809 0.91941 0.88926 0.89730 0.92819 0.93105 0.91809 0.90723 0.94828 0.92139 0.90700 0.91839 0.89183 0.91510 0.90744 0.91144 0.91580 0.93745 0.92963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.66 8.46 127.77 1.08 6.74 16 2 N -0.47 -25.00 3.01 -658.88 -1.99 -26.99 16 3 C -0.34 -19.62 9.25 84.04 0.78 -18.84 16 4 H 0.07 4.27 7.44 -2.91 -0.02 4.25 16 5 C -0.01 -0.33 5.07 84.93 0.43 0.10 16 6 N -0.90 -49.24 10.75 21.66 0.23 -49.00 16 7 Si 0.99 43.77 29.57 68.60 2.03 45.79 16 8 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 9 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 10 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 11 C 0.44 21.71 7.04 87.66 0.62 22.33 16 12 O -0.61 -33.28 11.06 -3.08 -0.03 -33.31 16 13 C -0.11 -4.16 3.36 29.85 0.10 -4.06 16 14 C -0.03 -0.86 0.51 -52.18 -0.03 -0.89 16 15 C -0.11 -3.72 4.17 30.59 0.13 -3.59 16 16 C -0.08 -2.23 3.20 -10.79 -0.03 -2.27 16 17 C -0.10 -2.87 5.19 30.59 0.16 -2.71 16 18 C -0.08 -2.32 3.20 -10.78 -0.03 -2.35 16 19 C -0.10 -2.16 5.19 30.59 0.16 -2.00 16 20 C -0.08 -1.63 3.20 -10.80 -0.03 -1.66 16 21 C -0.10 -2.06 5.19 30.60 0.16 -1.91 16 22 C -0.10 -2.36 4.47 30.60 0.14 -2.22 16 23 C -0.11 -3.90 4.18 30.61 0.13 -3.77 16 24 H 0.04 1.84 7.77 -2.38 -0.02 1.82 16 25 H 0.06 2.34 6.55 -2.39 -0.02 2.33 16 26 H 0.05 2.60 6.83 -2.39 -0.02 2.58 16 27 H 0.27 13.84 8.31 -92.71 -0.77 13.07 16 28 H 0.09 2.97 7.40 -2.39 -0.02 2.96 16 29 H 0.08 2.90 8.11 -2.39 -0.02 2.88 16 30 H 0.05 2.31 5.51 -2.38 -0.01 2.30 16 31 H 0.05 1.60 8.14 -2.38 -0.02 1.58 16 32 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.07 1.71 8.14 -2.38 -0.02 1.69 16 34 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 41 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 42 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 43 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 44 H 0.05 2.34 5.51 -2.38 -0.01 2.33 16 Total: -1.00 -65.79 316.67 4.95 -60.84 By element: Atomic # 1 Polarization: 18.79 SS G_CDS: 0.96 Total: 19.75 kcal Atomic # 6 Polarization: -20.83 SS G_CDS: 3.75 Total: -17.08 kcal Atomic # 7 Polarization: -74.24 SS G_CDS: -1.75 Total: -75.99 kcal Atomic # 8 Polarization: -33.28 SS G_CDS: -0.03 Total: -33.31 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.79 kcal Total: -65.79 4.95 -60.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112011321.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.484 kcal (2) G-P(sol) polarization free energy of solvation -65.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds