Wall clock time and date at job start Mon Mar 30 2020 02:01:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46505 * 109.47402 * 2 1 4 4 C 1.36942 * 119.99873 * 264.29439 * 3 2 1 5 5 H 1.07997 * 119.99785 * 188.64242 * 4 3 2 6 6 C 1.38810 * 119.99739 * 8.62711 * 4 3 2 7 7 N 1.31620 * 120.00101 * 24.61191 * 6 4 3 8 8 Si 1.86802 * 119.99898 * 204.60582 * 6 4 3 9 9 H 1.48499 * 109.46852 * 85.03428 * 8 6 4 10 10 H 1.48506 * 109.47228 * 205.02992 * 8 6 4 11 11 H 1.48492 * 109.47511 * 325.03205 * 8 6 4 12 12 C 1.46496 * 120.00348 * 84.28568 * 3 2 1 13 13 C 1.53000 * 109.47289 * 270.00348 * 12 3 2 14 14 C 1.52998 * 109.47163 * 179.97438 * 13 12 3 15 15 O 1.42900 * 109.47418 * 180.02562 * 14 13 12 16 16 C 1.42901 * 114.00448 * 180.02562 * 15 14 13 17 17 C 1.52997 * 109.47202 * 179.97438 * 16 15 14 18 18 C 1.50702 * 109.47192 * 179.97438 * 17 16 15 19 19 C 1.38236 * 120.00085 * 89.99892 * 18 17 16 20 20 C 1.38228 * 120.00163 * 179.97438 * 19 18 17 21 21 C 1.38240 * 119.99780 * 359.97438 * 20 19 18 22 22 C 1.38233 * 120.00049 * 0.27819 * 21 20 19 23 23 C 1.38233 * 119.99808 * 269.98102 * 18 17 16 24 24 H 1.08999 * 109.47235 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.47150 * 300.00685 * 1 2 3 26 26 H 1.08997 * 109.47282 * 59.99683 * 1 2 3 27 27 H 1.08993 * 109.47189 * 239.99955 * 2 1 3 28 28 H 1.09000 * 109.46923 * 119.99646 * 2 1 3 29 29 H 0.96999 * 119.99870 * 179.97438 * 7 6 4 30 30 H 1.08993 * 109.47236 * 150.00089 * 12 3 2 31 31 H 1.09004 * 109.47006 * 30.00182 * 12 3 2 32 32 H 1.09000 * 109.46983 * 60.00028 * 13 12 3 33 33 H 1.08996 * 109.47050 * 300.00099 * 13 12 3 34 34 H 1.09000 * 109.46894 * 60.00285 * 14 13 12 35 35 H 1.08996 * 109.47473 * 300.00151 * 14 13 12 36 36 H 1.08996 * 109.47182 * 59.99311 * 16 15 14 37 37 H 1.09003 * 109.46367 * 299.99836 * 16 15 14 38 38 H 1.09004 * 109.47382 * 59.99896 * 17 16 15 39 39 H 1.08998 * 109.47365 * 300.00004 * 17 16 15 40 40 H 1.08003 * 119.99830 * 359.97438 * 19 18 17 41 41 H 1.08001 * 120.00293 * 180.02562 * 20 19 18 42 42 H 1.08008 * 119.99781 * 180.02562 * 21 20 19 43 43 H 1.08003 * 120.00088 * 179.73000 * 22 21 20 44 44 H 1.08004 * 120.00375 * 359.97438 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3578 1.9874 -1.1801 5 1 2.8471 2.9502 -1.1714 6 6 2.0732 1.3643 -2.3874 7 7 1.0959 0.4857 -2.4602 8 14 3.0771 1.7730 -3.9088 9 1 4.3046 0.9376 -3.9309 10 1 2.2689 1.4974 -5.1239 11 1 3.4557 3.2085 -3.8813 12 6 2.1435 2.1140 1.2623 13 6 0.8339 2.8475 1.5583 14 6 0.9644 3.6123 2.8769 15 8 -0.2590 4.2970 3.1537 16 6 -0.2432 5.0469 4.3700 17 6 -1.5963 5.7345 4.5628 18 6 -1.5798 6.5249 5.8458 19 6 -1.1704 7.8452 5.8391 20 6 -1.1558 8.5703 7.0159 21 6 -1.5512 7.9752 8.1993 22 6 -1.9557 6.6534 8.2069 23 6 -1.9746 5.9296 7.0294 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5140 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 0.8968 0.0505 -3.3039 30 1 2.9553 2.8371 1.1838 31 1 2.3579 1.4134 2.0694 32 1 0.0221 2.1243 1.6369 33 1 0.6195 3.5481 0.7512 34 1 1.7762 4.3355 2.7987 35 1 1.1786 2.9115 3.6838 36 1 0.5432 5.8001 4.3223 37 1 -0.0534 4.3760 5.2079 38 1 -2.3831 4.9816 4.6104 39 1 -1.7857 6.4053 3.7248 40 1 -0.8618 8.3102 4.9144 41 1 -0.8362 9.6019 7.0106 42 1 -1.5402 8.5420 9.1187 43 1 -2.2605 6.1873 9.1323 44 1 -2.2952 4.8983 7.0345 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000118002052.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:29 Heat of formation + Delta-G solvation = -9.469305 kcal Electronic energy + Delta-G solvation = -20593.412382 eV Core-core repulsion = 17511.216515 eV Total energy + Delta-G solvation = -3082.195867 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.58230 -37.86928 -36.19978 -33.78862 -32.28235 -31.14750 -30.47479 -29.11247 -28.28991 -25.08862 -23.57444 -23.07330 -22.82867 -21.24358 -20.71227 -20.01112 -17.11843 -16.76333 -16.29842 -16.15527 -15.23973 -15.22601 -14.87462 -14.37683 -14.08997 -13.66081 -13.48389 -13.24180 -13.12254 -12.89494 -12.44782 -12.06873 -11.78844 -11.56807 -11.42891 -11.38909 -11.17901 -11.08760 -10.88298 -10.73372 -10.60573 -10.27872 -10.21722 -9.73639 -9.52689 -9.38108 -9.22540 -9.17482 -8.96663 -8.29474 -6.83028 -5.70261 -3.01330 1.07355 1.13890 3.43215 3.46325 3.51022 3.51225 3.86829 4.55919 4.58824 4.68017 4.78110 4.89324 4.97260 5.16594 5.26253 5.29877 5.37275 5.40636 5.49609 5.54428 5.66634 5.68221 5.72561 5.85272 5.94445 6.06251 6.15469 6.20174 6.24879 6.37063 6.40835 6.48925 6.66601 6.74708 6.86213 7.00978 7.01614 7.20582 7.28203 7.48445 7.73176 7.84608 8.17960 8.43227 9.30922 9.93941 10.39081 11.33715 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.034478 B = 0.002515 C = 0.002425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.920704 B =11131.159913 C =11543.189826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.166 3.834 3 N -0.597 5.597 4 C -0.247 4.247 5 H 0.073 0.927 6 C -0.005 4.005 7 N -0.897 5.897 8 Si 0.897 3.103 9 H -0.290 1.290 10 H -0.294 1.294 11 H -0.282 1.282 12 C 0.156 3.844 13 C -0.141 4.141 14 C 0.066 3.934 15 O -0.389 6.389 16 C 0.069 3.931 17 C -0.081 4.081 18 C -0.078 4.078 19 C -0.115 4.115 20 C -0.120 4.120 21 C -0.126 4.126 22 C -0.120 4.120 23 C -0.115 4.115 24 H 0.017 0.983 25 H 0.015 0.985 26 H 0.090 0.910 27 H 0.087 0.913 28 H 0.001 0.999 29 H 0.251 0.749 30 H 0.044 0.956 31 H 0.037 0.963 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.043 0.957 35 H 0.041 0.959 36 H 0.046 0.954 37 H 0.045 0.955 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.123 0.877 41 H 0.121 0.879 42 H 0.120 0.880 43 H 0.121 0.879 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.719 11.478 19.665 23.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.041 3.959 3 N -0.318 5.318 4 C -0.376 4.376 5 H 0.091 0.909 6 C -0.202 4.202 7 N -0.543 5.543 8 Si 0.727 3.273 9 H -0.217 1.217 10 H -0.220 1.220 11 H -0.208 1.208 12 C 0.028 3.972 13 C -0.182 4.182 14 C -0.011 4.011 15 O -0.308 6.308 16 C -0.008 4.008 17 C -0.119 4.119 18 C -0.078 4.078 19 C -0.133 4.133 20 C -0.138 4.138 21 C -0.144 4.144 22 C -0.138 4.138 23 C -0.133 4.133 24 H 0.036 0.964 25 H 0.033 0.967 26 H 0.108 0.892 27 H 0.105 0.895 28 H 0.020 0.980 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.055 0.945 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.100 0.900 39 H 0.100 0.900 40 H 0.141 0.859 41 H 0.139 0.861 42 H 0.138 0.862 43 H 0.139 0.861 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -4.906 11.363 19.376 22.991 hybrid contribution 0.529 0.302 -0.567 0.832 sum -4.377 11.665 18.808 22.561 Atomic orbital electron populations 1.22423 0.99312 0.98086 1.01237 1.20806 0.92522 0.84456 0.98073 1.44279 1.75709 1.10224 1.01596 1.19288 1.31091 1.03580 0.83607 0.90894 1.24727 0.98033 1.00159 0.97291 1.70164 1.27333 1.32026 1.24799 0.86365 0.80300 0.77783 0.82815 1.21690 1.22018 1.20816 1.20672 0.93748 0.94015 0.88744 1.22494 1.02175 0.99472 0.94019 1.22653 0.85507 0.94408 0.98514 1.87915 1.36936 1.65823 1.40172 1.22348 0.96653 0.94327 0.87511 1.20502 0.97718 0.99057 0.94597 1.19814 0.98768 0.94337 0.94901 1.21134 0.99716 0.93991 0.98479 1.21161 0.99939 0.99920 0.92742 1.21162 0.99857 0.95325 0.98091 1.21158 0.99970 0.94594 0.98055 1.21129 1.00015 1.00019 0.92172 0.96362 0.96654 0.89152 0.89499 0.98036 0.93876 0.93776 0.94454 0.91483 0.91378 0.93921 0.94067 0.93593 0.93627 0.90045 0.90011 0.85876 0.86067 0.86218 0.86076 0.85897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.60 9.58 37.16 0.36 -3.24 16 2 C 0.17 4.11 5.64 -4.04 -0.02 4.08 16 3 N -0.60 -15.00 2.54 -173.24 -0.44 -15.44 16 4 C -0.25 -6.74 9.70 -15.06 -0.15 -6.89 16 5 H 0.07 1.96 7.93 -52.49 -0.42 1.55 16 6 C -0.01 -0.14 4.91 -17.43 -0.09 -0.23 16 7 N -0.90 -25.42 8.54 55.49 0.47 -24.94 16 8 Si 0.90 21.81 29.62 -169.99 -5.03 16.77 16 9 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 10 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 11 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 12 C 0.16 3.23 5.71 -4.04 -0.02 3.20 16 13 C -0.14 -2.75 5.79 -26.73 -0.15 -2.91 16 14 C 0.07 1.05 5.94 37.16 0.22 1.27 16 15 O -0.39 -6.27 10.34 -35.23 -0.36 -6.63 16 16 C 0.07 0.85 5.92 37.16 0.22 1.07 16 17 C -0.08 -0.88 5.71 -27.88 -0.16 -1.04 16 18 C -0.08 -0.78 5.13 -104.62 -0.54 -1.32 16 19 C -0.12 -1.07 9.70 -39.59 -0.38 -1.46 16 20 C -0.12 -0.99 10.05 -39.58 -0.40 -1.39 16 21 C -0.13 -1.01 10.05 -39.58 -0.40 -1.40 16 22 C -0.12 -0.99 10.05 -39.58 -0.40 -1.39 16 23 C -0.12 -1.07 9.70 -39.58 -0.38 -1.45 16 24 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 25 H 0.01 0.33 5.98 -51.93 -0.31 0.02 16 26 H 0.09 2.44 6.28 -51.93 -0.33 2.11 16 27 H 0.09 2.37 5.87 -51.93 -0.31 2.06 16 28 H 0.00 0.03 7.97 -51.93 -0.41 -0.38 16 29 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 30 H 0.04 0.88 8.03 -51.93 -0.42 0.46 16 31 H 0.04 0.71 7.95 -51.93 -0.41 0.29 16 32 H 0.07 1.40 5.93 -51.93 -0.31 1.09 16 33 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 34 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.08 0.87 8.08 -51.93 -0.42 0.45 16 39 H 0.08 0.88 8.09 -51.93 -0.42 0.46 16 40 H 0.12 1.01 8.06 -52.48 -0.42 0.59 16 41 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 42 H 0.12 0.69 8.06 -52.48 -0.42 0.27 16 43 H 0.12 0.75 8.06 -52.48 -0.42 0.33 16 44 H 0.12 0.99 8.06 -52.48 -0.42 0.57 16 LS Contribution 355.51 15.07 5.36 5.36 Total: -1.00 -29.54 355.51 -9.84 -39.38 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: -7.54 Total: -1.41 kcal Atomic # 6 Polarization: -10.79 SS G_CDS: -2.29 Total: -13.09 kcal Atomic # 7 Polarization: -40.41 SS G_CDS: 0.03 Total: -40.38 kcal Atomic # 8 Polarization: -6.27 SS G_CDS: -0.36 Total: -6.63 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.03 Total: 16.77 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -29.54 -9.84 -39.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000118002052.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.907 kcal (2) G-P(sol) polarization free energy of solvation -29.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds