Wall clock time and date at job start Mon Mar 30 2020 02:01:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46505 * 109.47402 * 2 1 4 4 C 1.36942 * 119.99873 * 264.29439 * 3 2 1 5 5 H 1.07997 * 119.99785 * 188.64242 * 4 3 2 6 6 C 1.38810 * 119.99739 * 8.62711 * 4 3 2 7 7 N 1.31620 * 120.00101 * 24.61191 * 6 4 3 8 8 Si 1.86802 * 119.99898 * 204.60582 * 6 4 3 9 9 H 1.48499 * 109.46852 * 85.03428 * 8 6 4 10 10 H 1.48506 * 109.47228 * 205.02992 * 8 6 4 11 11 H 1.48492 * 109.47511 * 325.03205 * 8 6 4 12 12 C 1.46496 * 120.00348 * 84.28568 * 3 2 1 13 13 C 1.53000 * 109.47289 * 270.00348 * 12 3 2 14 14 C 1.52998 * 109.47163 * 179.97438 * 13 12 3 15 15 O 1.42900 * 109.47418 * 180.02562 * 14 13 12 16 16 C 1.42901 * 114.00448 * 180.02562 * 15 14 13 17 17 C 1.52997 * 109.47202 * 179.97438 * 16 15 14 18 18 C 1.50702 * 109.47192 * 179.97438 * 17 16 15 19 19 C 1.38236 * 120.00085 * 89.99892 * 18 17 16 20 20 C 1.38228 * 120.00163 * 179.97438 * 19 18 17 21 21 C 1.38240 * 119.99780 * 359.97438 * 20 19 18 22 22 C 1.38233 * 120.00049 * 0.27819 * 21 20 19 23 23 C 1.38233 * 119.99808 * 269.98102 * 18 17 16 24 24 H 1.08999 * 109.47235 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.47150 * 300.00685 * 1 2 3 26 26 H 1.08997 * 109.47282 * 59.99683 * 1 2 3 27 27 H 1.08993 * 109.47189 * 239.99955 * 2 1 3 28 28 H 1.09000 * 109.46923 * 119.99646 * 2 1 3 29 29 H 0.96999 * 119.99870 * 179.97438 * 7 6 4 30 30 H 1.08993 * 109.47236 * 150.00089 * 12 3 2 31 31 H 1.09004 * 109.47006 * 30.00182 * 12 3 2 32 32 H 1.09000 * 109.46983 * 60.00028 * 13 12 3 33 33 H 1.08996 * 109.47050 * 300.00099 * 13 12 3 34 34 H 1.09000 * 109.46894 * 60.00285 * 14 13 12 35 35 H 1.08996 * 109.47473 * 300.00151 * 14 13 12 36 36 H 1.08996 * 109.47182 * 59.99311 * 16 15 14 37 37 H 1.09003 * 109.46367 * 299.99836 * 16 15 14 38 38 H 1.09004 * 109.47382 * 59.99896 * 17 16 15 39 39 H 1.08998 * 109.47365 * 300.00004 * 17 16 15 40 40 H 1.08003 * 119.99830 * 359.97438 * 19 18 17 41 41 H 1.08001 * 120.00293 * 180.02562 * 20 19 18 42 42 H 1.08008 * 119.99781 * 180.02562 * 21 20 19 43 43 H 1.08003 * 120.00088 * 179.73000 * 22 21 20 44 44 H 1.08004 * 120.00375 * 359.97438 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3578 1.9874 -1.1801 5 1 2.8471 2.9502 -1.1714 6 6 2.0732 1.3643 -2.3874 7 7 1.0959 0.4857 -2.4602 8 14 3.0771 1.7730 -3.9088 9 1 4.3046 0.9376 -3.9309 10 1 2.2689 1.4974 -5.1239 11 1 3.4557 3.2085 -3.8813 12 6 2.1435 2.1140 1.2623 13 6 0.8339 2.8475 1.5583 14 6 0.9644 3.6123 2.8769 15 8 -0.2590 4.2970 3.1537 16 6 -0.2432 5.0469 4.3700 17 6 -1.5963 5.7345 4.5628 18 6 -1.5798 6.5249 5.8458 19 6 -1.1704 7.8452 5.8391 20 6 -1.1558 8.5703 7.0159 21 6 -1.5512 7.9752 8.1993 22 6 -1.9557 6.6534 8.2069 23 6 -1.9746 5.9296 7.0294 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5140 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 0.8968 0.0505 -3.3039 30 1 2.9553 2.8371 1.1838 31 1 2.3579 1.4134 2.0694 32 1 0.0221 2.1243 1.6369 33 1 0.6195 3.5481 0.7512 34 1 1.7762 4.3355 2.7987 35 1 1.1786 2.9115 3.6838 36 1 0.5432 5.8001 4.3223 37 1 -0.0534 4.3760 5.2079 38 1 -2.3831 4.9816 4.6104 39 1 -1.7857 6.4053 3.7248 40 1 -0.8618 8.3102 4.9144 41 1 -0.8362 9.6019 7.0106 42 1 -1.5402 8.5420 9.1187 43 1 -2.2605 6.1873 9.1323 44 1 -2.2952 4.8983 7.0345 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000118002052.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:28 Heat of formation + Delta-G solvation = -23.209999 kcal Electronic energy + Delta-G solvation = -20594.008223 eV Core-core repulsion = 17511.216515 eV Total energy + Delta-G solvation = -3082.791708 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.26744 -39.07818 -37.99500 -34.82175 -33.85460 -32.29812 -31.77169 -30.80536 -29.35246 -26.80028 -25.01494 -24.31785 -23.45959 -22.62069 -21.97582 -21.60976 -18.73339 -17.86383 -17.35196 -17.29182 -16.76933 -16.15797 -15.89703 -15.74517 -15.57326 -15.14988 -14.71829 -14.29929 -14.22000 -13.88105 -13.72453 -13.63503 -13.43219 -13.20267 -12.82665 -12.73398 -12.52485 -12.34203 -12.29166 -12.08669 -11.92414 -11.90962 -11.79257 -11.60458 -11.36693 -11.15739 -10.52866 -10.33863 -9.82081 -9.64178 -8.82604 -7.78176 -5.10321 0.41184 0.49995 1.49312 1.52095 1.58723 2.53566 2.64946 2.95461 3.30756 3.72318 3.88551 3.97520 4.09752 4.16895 4.19636 4.20787 4.31442 4.44068 4.45490 4.56015 4.59967 4.64808 4.65655 4.75312 4.79042 4.86427 4.92976 4.98805 5.04890 5.17901 5.18560 5.19446 5.27025 5.34860 5.55297 5.57825 5.63003 5.64615 5.71739 5.83024 6.12379 6.17063 6.30316 6.39847 7.24235 7.96196 8.36103 9.23886 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.034478 B = 0.002515 C = 0.002425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.920704 B =11131.159913 C =11543.189826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.167 3.833 3 N -0.614 5.614 4 C -0.257 4.257 5 H 0.072 0.928 6 C -0.055 4.055 7 N -0.918 5.918 8 Si 0.958 3.042 9 H -0.288 1.288 10 H -0.299 1.299 11 H -0.276 1.276 12 C 0.153 3.847 13 C -0.127 4.127 14 C 0.074 3.926 15 O -0.414 6.414 16 C 0.068 3.932 17 C -0.076 4.076 18 C -0.093 4.093 19 C -0.129 4.129 20 C -0.126 4.126 21 C -0.130 4.130 22 C -0.126 4.126 23 C -0.128 4.128 24 H 0.032 0.968 25 H 0.025 0.975 26 H 0.055 0.945 27 H 0.057 0.943 28 H 0.026 0.974 29 H 0.245 0.755 30 H 0.051 0.949 31 H 0.061 0.939 32 H 0.050 0.950 33 H 0.036 0.964 34 H 0.056 0.944 35 H 0.062 0.938 36 H 0.053 0.947 37 H 0.056 0.944 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.128 0.872 41 H 0.140 0.860 42 H 0.143 0.857 43 H 0.141 0.859 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.178 12.388 21.711 25.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.042 3.958 3 N -0.336 5.336 4 C -0.387 4.387 5 H 0.090 0.910 6 C -0.250 4.250 7 N -0.565 5.565 8 Si 0.787 3.213 9 H -0.216 1.216 10 H -0.226 1.226 11 H -0.201 1.201 12 C 0.027 3.973 13 C -0.168 4.168 14 C -0.002 4.002 15 O -0.334 6.334 16 C -0.009 4.009 17 C -0.113 4.113 18 C -0.093 4.093 19 C -0.147 4.147 20 C -0.144 4.144 21 C -0.147 4.147 22 C -0.144 4.144 23 C -0.146 4.146 24 H 0.052 0.948 25 H 0.044 0.956 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.044 0.956 29 H 0.055 0.945 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.069 0.931 33 H 0.055 0.945 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.097 0.903 39 H 0.095 0.905 40 H 0.146 0.854 41 H 0.158 0.842 42 H 0.161 0.839 43 H 0.159 0.841 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -4.358 12.292 21.451 25.104 hybrid contribution 0.336 0.068 -1.099 1.151 sum -4.022 12.361 20.351 24.148 Atomic orbital electron populations 1.22212 0.98879 0.98640 0.99930 1.20715 0.92850 0.84508 0.97715 1.44481 1.75951 1.10709 1.02413 1.19527 1.30782 1.03590 0.84757 0.91034 1.25404 0.98939 1.00831 0.99782 1.70330 1.28244 1.33063 1.24891 0.85414 0.78609 0.77748 0.79507 1.21565 1.22626 1.20084 1.20829 0.94353 0.94515 0.87605 1.22194 1.00787 0.98613 0.95190 1.22469 0.85928 0.94916 0.96935 1.87868 1.37007 1.66402 1.42086 1.22513 0.97757 0.94350 0.86255 1.20424 0.96843 0.98876 0.95148 1.19791 1.00109 0.94711 0.94661 1.21311 1.00066 0.94006 0.99311 1.21453 0.99585 1.00856 0.92511 1.21514 0.98884 0.95436 0.98915 1.21460 0.99524 0.94875 0.98491 1.21315 1.00239 1.00616 0.92394 0.94849 0.95578 0.92654 0.92440 0.95614 0.94517 0.93024 0.92105 0.93130 0.94525 0.92600 0.92015 0.92912 0.92625 0.90343 0.90543 0.85437 0.84181 0.83935 0.84086 0.85257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.51 9.58 71.98 0.69 -5.82 16 2 C 0.17 8.20 5.64 86.38 0.49 8.68 16 3 N -0.61 -30.65 2.54 -702.02 -1.78 -32.43 16 4 C -0.26 -14.09 9.70 84.03 0.82 -13.28 16 5 H 0.07 3.85 7.93 -2.91 -0.02 3.83 16 6 C -0.05 -3.06 4.91 84.86 0.42 -2.64 16 7 N -0.92 -53.02 8.54 21.65 0.18 -52.83 16 8 Si 0.96 45.33 29.62 68.60 2.03 47.36 16 9 H -0.29 -13.50 7.11 99.48 0.71 -12.80 16 10 H -0.30 -14.33 7.11 99.48 0.71 -13.63 16 11 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 12 C 0.15 6.13 5.71 86.38 0.49 6.63 16 13 C -0.13 -4.90 5.79 30.59 0.18 -4.72 16 14 C 0.07 2.24 5.94 71.98 0.43 2.66 16 15 O -0.41 -12.93 10.34 -148.98 -1.54 -14.47 16 16 C 0.07 1.58 5.92 71.98 0.43 2.01 16 17 C -0.08 -1.59 5.71 29.85 0.17 -1.42 16 18 C -0.09 -1.77 5.13 -19.87 -0.10 -1.87 16 19 C -0.13 -2.26 9.70 22.27 0.22 -2.05 16 20 C -0.13 -1.86 10.05 22.27 0.22 -1.64 16 21 C -0.13 -1.76 10.05 22.27 0.22 -1.53 16 22 C -0.13 -1.82 10.05 22.27 0.22 -1.59 16 23 C -0.13 -2.20 9.70 22.27 0.22 -1.98 16 24 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 25 H 0.03 1.14 5.98 -2.38 -0.01 1.12 16 26 H 0.05 3.03 6.28 -2.39 -0.02 3.02 16 27 H 0.06 3.16 5.87 -2.39 -0.01 3.15 16 28 H 0.03 1.12 7.97 -2.39 -0.02 1.10 16 29 H 0.25 13.89 8.31 -92.71 -0.77 13.12 16 30 H 0.05 1.98 8.03 -2.39 -0.02 1.96 16 31 H 0.06 2.15 7.95 -2.38 -0.02 2.13 16 32 H 0.05 2.09 5.93 -2.39 -0.01 2.07 16 33 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.08 1.66 8.08 -2.39 -0.02 1.64 16 39 H 0.08 1.65 8.09 -2.39 -0.02 1.63 16 40 H 0.13 2.00 8.06 -2.91 -0.02 1.98 16 41 H 0.14 1.44 8.06 -2.91 -0.02 1.42 16 42 H 0.14 1.22 8.06 -2.91 -0.02 1.19 16 43 H 0.14 1.39 8.06 -2.91 -0.02 1.37 16 44 H 0.13 1.94 8.06 -2.91 -0.02 1.92 16 Total: -1.00 -63.13 355.51 4.94 -58.19 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: 0.94 Total: 12.74 kcal Atomic # 6 Polarization: -23.67 SS G_CDS: 5.10 Total: -18.57 kcal Atomic # 7 Polarization: -83.67 SS G_CDS: -1.60 Total: -85.26 kcal Atomic # 8 Polarization: -12.93 SS G_CDS: -1.54 Total: -14.47 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Total: -63.13 4.94 -58.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000118002052.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.981 kcal (2) G-P(sol) polarization free energy of solvation -63.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds