Wall clock time and date at job start Mon Mar 30 2020 02:39:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30499 * 125.64834 * 2 1 4 4 C 1.34127 * 109.25338 * 180.29398 * 3 2 1 5 5 C 1.34666 * 108.02402 * 359.72833 * 4 3 2 6 6 N 1.35044 * 125.65195 * 179.83012 * 2 1 3 7 7 C 1.46501 * 126.39364 * 359.97057 * 6 2 1 8 8 C 1.53005 * 109.46906 * 84.71914 * 7 6 2 9 9 C 1.53000 * 109.47070 * 179.97438 * 8 7 6 10 10 N 1.46895 * 109.46839 * 180.02562 * 9 8 7 11 11 C 1.46907 * 110.99750 * 189.99866 * 10 9 8 12 12 C 1.50700 * 109.46942 * 75.47744 * 11 10 9 13 13 H 1.08002 * 120.00244 * 356.97740 * 12 11 10 14 14 C 1.37878 * 120.00281 * 176.97060 * 12 11 10 15 15 N 1.31509 * 120.00752 * 180.02562 * 14 12 11 16 16 Si 1.86802 * 119.99423 * 0.02562 * 14 12 11 17 17 H 1.48494 * 109.47307 * 90.00209 * 16 14 12 18 18 H 1.48505 * 109.46944 * 210.00178 * 16 14 12 19 19 H 1.48498 * 109.47552 * 329.99792 * 16 14 12 20 20 C 1.46897 * 111.00479 * 66.04600 * 10 9 8 21 21 C 1.53002 * 109.47271 * 195.57077 * 20 10 9 22 22 C 1.52996 * 117.49721 * 244.13246 * 21 20 10 23 23 C 1.53001 * 60.00295 * 252.51314 * 22 21 20 24 24 H 1.08995 * 109.47226 * 270.17170 * 1 2 3 25 25 H 1.09001 * 109.47332 * 30.17503 * 1 2 3 26 26 H 1.09005 * 109.47321 * 150.16921 * 1 2 3 27 27 H 1.08005 * 125.98701 * 179.72988 * 4 3 2 28 28 H 1.07998 * 126.59523 * 179.97438 * 5 4 3 29 29 H 1.08994 * 109.47452 * 324.72096 * 7 6 2 30 30 H 1.08997 * 109.46884 * 204.71803 * 7 6 2 31 31 H 1.09007 * 109.47196 * 59.99771 * 8 7 6 32 32 H 1.08997 * 109.47259 * 299.99660 * 8 7 6 33 33 H 1.08998 * 109.46994 * 59.99774 * 9 8 7 34 34 H 1.08997 * 109.47007 * 300.00065 * 9 8 7 35 35 H 1.08997 * 109.47257 * 195.48041 * 11 10 9 36 36 H 1.08996 * 109.46889 * 315.48025 * 11 10 9 37 37 H 0.96998 * 120.00623 * 180.02562 * 15 14 12 38 38 H 1.08994 * 109.47047 * 315.57380 * 20 10 9 39 39 H 1.09005 * 109.47117 * 75.57262 * 20 10 9 40 40 H 1.08994 * 115.54626 * 29.84790 * 21 20 10 41 41 H 1.08997 * 117.50488 * 0.02562 * 22 21 20 42 42 H 1.09001 * 117.49514 * 145.02220 * 22 21 20 43 43 H 1.08997 * 117.49688 * 252.51483 * 23 22 21 44 44 H 1.08997 * 117.49455 * 107.48984 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2675 1.0604 0.0000 4 6 3.5543 0.6819 -0.0065 5 6 3.5926 -0.6642 -0.0046 6 7 2.2941 -1.0973 0.0033 7 6 1.8425 -2.4910 0.0080 8 6 1.5584 -2.9399 -1.4269 9 6 1.0873 -4.3956 -1.4220 10 7 0.8152 -4.8267 -2.7997 11 6 0.1395 -6.1310 -2.8193 12 6 -1.3047 -5.9545 -2.4265 13 1 -1.6710 -4.9799 -2.1391 14 6 -2.1585 -7.0370 -2.4341 15 7 -3.4189 -6.8830 -2.0918 16 14 -1.5249 -8.7227 -2.9308 17 1 -1.0277 -9.4385 -1.7286 18 1 -2.6261 -9.5024 -3.5511 19 1 -0.4173 -8.5672 -3.9077 20 6 2.0503 -4.8617 -3.5942 21 6 1.6982 -4.9293 -5.0816 22 6 2.1128 -6.1861 -5.8492 23 6 2.8523 -4.8675 -6.0842 24 1 -0.3633 0.0031 1.0276 25 1 -0.3634 0.8884 -0.5165 26 1 -0.3634 -0.8915 -0.5112 27 1 4.4097 1.3411 -0.0122 28 1 4.4776 -1.2832 -0.0089 29 1 0.9327 -2.5761 0.6021 30 1 2.6187 -3.1229 0.4394 31 1 2.4682 -2.8547 -2.0211 32 1 0.7821 -2.3079 -1.8583 33 1 0.1777 -4.4811 -0.8277 34 1 1.8639 -5.0272 -0.9907 35 1 0.1941 -6.5534 -3.8226 36 1 0.6280 -6.8039 -2.1147 37 1 -4.0195 -7.6447 -2.0969 38 1 2.6332 -3.9615 -3.3993 39 1 2.6346 -5.7397 -3.3188 40 1 0.7596 -4.4529 -5.3646 41 1 2.6360 -6.9650 -5.2946 42 1 1.4467 -6.5370 -6.6374 43 1 2.6727 -4.3509 -7.0270 44 1 3.8623 -4.7787 -5.6842 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000122728569.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:12 Heat of formation + Delta-G solvation = 83.954635 kcal Electronic energy + Delta-G solvation = -21523.237919 eV Core-core repulsion = 18477.385969 eV Total energy + Delta-G solvation = -3045.851950 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.04741 -38.20951 -36.21703 -34.62196 -32.55266 -31.68964 -30.82717 -28.25837 -26.97682 -26.26883 -24.18586 -22.20677 -21.63626 -21.30688 -20.79642 -19.69926 -19.59128 -17.05565 -16.84814 -15.78022 -15.48615 -15.07518 -14.82107 -14.53023 -14.13063 -13.72636 -13.68751 -13.61498 -12.98224 -12.85047 -12.70346 -12.42193 -12.29741 -12.27296 -11.95734 -11.61508 -11.36963 -11.30944 -10.98722 -10.78195 -10.54538 -10.44449 -10.07541 -9.92203 -9.84530 -9.54385 -9.47705 -9.32044 -8.61649 -8.31400 -7.50922 -6.09509 -4.06497 2.07254 2.80248 3.17851 3.23409 3.32148 3.33862 4.03042 4.37604 4.45073 4.54862 4.62617 4.80743 4.98972 5.12681 5.13789 5.22177 5.23002 5.30848 5.35260 5.42260 5.54256 5.55332 5.63288 5.74326 5.76392 5.79370 5.82532 5.90659 6.00522 6.04441 6.11682 6.26782 6.30041 6.40117 6.43906 6.63382 6.79235 6.80892 6.87032 7.22438 7.58355 7.81919 7.94827 8.14770 8.60609 8.99278 9.52636 11.03628 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.015339 B = 0.004508 C = 0.003727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.013378 B = 6209.859655 C = 7510.850416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.210 3.790 3 N -0.499 5.499 4 C -0.034 4.034 5 C -0.061 4.061 6 N -0.450 5.450 7 C 0.102 3.898 8 C -0.130 4.130 9 C 0.066 3.934 10 N -0.522 5.522 11 C 0.162 3.838 12 C -0.507 4.507 13 H 0.080 0.920 14 C 0.069 3.931 15 N -0.900 5.900 16 Si 0.871 3.129 17 H -0.278 1.278 18 H -0.286 1.286 19 H -0.266 1.266 20 C 0.081 3.919 21 C -0.132 4.132 22 C -0.183 4.183 23 C -0.186 4.186 24 H 0.078 0.922 25 H 0.088 0.912 26 H 0.080 0.920 27 H 0.166 0.834 28 H 0.170 0.830 29 H 0.096 0.904 30 H 0.090 0.910 31 H 0.065 0.935 32 H 0.080 0.920 33 H 0.091 0.909 34 H 0.021 0.979 35 H 0.035 0.965 36 H -0.018 1.018 37 H 0.263 0.737 38 H 0.068 0.932 39 H 0.023 0.977 40 H 0.115 0.885 41 H 0.088 0.912 42 H 0.091 0.909 43 H 0.090 0.910 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.491 7.283 1.294 15.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.053 4.053 3 N -0.219 5.219 4 C -0.182 4.182 5 C -0.194 4.194 6 N -0.132 5.132 7 C -0.021 4.021 8 C -0.169 4.169 9 C -0.063 4.063 10 N -0.246 5.246 11 C 0.036 3.964 12 C -0.545 4.545 13 H 0.098 0.902 14 C -0.132 4.132 15 N -0.539 5.539 16 Si 0.698 3.302 17 H -0.204 1.204 18 H -0.212 1.212 19 H -0.190 1.190 20 C -0.047 4.047 21 C -0.151 4.151 22 C -0.221 4.221 23 C -0.223 4.223 24 H 0.097 0.903 25 H 0.107 0.893 26 H 0.099 0.901 27 H 0.183 0.817 28 H 0.187 0.813 29 H 0.114 0.886 30 H 0.108 0.892 31 H 0.083 0.917 32 H 0.098 0.902 33 H 0.109 0.891 34 H 0.040 0.960 35 H 0.053 0.947 36 H 0.000 1.000 37 H 0.073 0.927 38 H 0.086 0.914 39 H 0.042 0.958 40 H 0.133 0.867 41 H 0.106 0.894 42 H 0.109 0.891 43 H 0.109 0.891 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 12.665 8.164 1.117 15.110 hybrid contribution 1.257 -2.578 0.051 2.869 sum 13.922 5.585 1.168 15.046 Atomic orbital electron populations 1.20249 0.84893 1.04535 1.03493 1.23336 0.95798 0.81344 1.04776 1.70233 1.02226 1.28505 1.20927 1.22224 0.94810 0.92754 1.08423 1.22658 0.87233 0.96816 1.12735 1.45515 1.06364 1.07692 1.53656 1.21973 1.01915 0.78515 0.99656 1.22023 1.02398 0.98440 0.94031 1.21888 1.00516 0.92275 0.91590 1.61895 1.20626 1.31959 1.10084 1.20234 0.95032 0.84714 0.96462 1.21024 0.91608 0.97105 1.44751 0.90193 1.24876 0.94734 0.98589 0.95017 1.69881 1.04139 1.31072 1.48830 0.86931 0.78942 0.85020 0.79310 1.20435 1.21156 1.19034 1.21694 0.92099 0.99321 0.91630 1.22295 0.99011 1.01192 0.92558 1.22989 1.03814 0.91485 1.03762 1.22926 0.96901 1.01557 1.00953 0.90306 0.89294 0.90076 0.81680 0.81271 0.88564 0.89182 0.91688 0.90182 0.89098 0.96049 0.94656 1.00001 0.92674 0.91408 0.95837 0.86742 0.89389 0.89082 0.89132 0.89433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.81 10.04 36.00 0.36 -0.45 16 2 C 0.21 2.87 7.90 -155.42 -1.23 1.64 16 3 N -0.50 -7.56 11.25 -10.82 -0.12 -7.68 16 4 C -0.03 -0.44 11.87 -17.81 -0.21 -0.65 16 5 C -0.06 -0.71 11.58 -16.56 -0.19 -0.90 16 6 N -0.45 -5.59 2.75 -113.91 -0.31 -5.90 16 7 C 0.10 1.12 5.68 -4.04 -0.02 1.10 16 8 C -0.13 -1.71 5.50 -26.73 -0.15 -1.86 16 9 C 0.07 1.07 4.78 -3.83 -0.02 1.05 16 10 N -0.52 -9.96 4.39 -236.08 -1.04 -11.00 16 11 C 0.16 3.70 3.67 -4.97 -0.02 3.68 16 12 C -0.51 -13.71 9.14 -34.44 -0.31 -14.03 16 13 H 0.08 2.35 7.94 -52.49 -0.42 1.94 16 14 C 0.07 1.94 5.47 -17.82 -0.10 1.85 16 15 N -0.90 -26.81 13.96 55.43 0.77 -26.04 16 16 Si 0.87 20.91 27.53 -169.99 -4.68 16.23 16 17 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 18 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.27 -6.14 6.46 56.52 0.36 -5.78 16 20 C 0.08 1.31 5.11 -3.82 -0.02 1.29 16 21 C -0.13 -2.08 4.96 -90.62 -0.45 -2.53 16 22 C -0.18 -2.67 9.97 -26.73 -0.27 -2.94 16 23 C -0.19 -2.37 10.25 -26.73 -0.27 -2.64 16 24 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 26 H 0.08 0.88 7.34 -51.93 -0.38 0.50 16 27 H 0.17 1.67 8.06 -52.48 -0.42 1.24 16 28 H 0.17 1.46 8.06 -52.49 -0.42 1.03 16 29 H 0.10 1.00 7.94 -51.93 -0.41 0.59 16 30 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.06 0.85 6.29 -51.92 -0.33 0.52 16 32 H 0.08 1.17 7.64 -51.93 -0.40 0.77 16 33 H 0.09 1.64 7.34 -51.93 -0.38 1.26 16 34 H 0.02 0.33 8.12 -51.93 -0.42 -0.10 16 35 H 0.04 0.84 5.78 -51.93 -0.30 0.54 16 36 H -0.02 -0.41 7.58 -51.93 -0.39 -0.80 16 37 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 38 H 0.07 0.98 5.94 -51.93 -0.31 0.67 16 39 H 0.02 0.38 7.79 -51.93 -0.40 -0.02 16 40 H 0.11 2.00 8.14 -51.93 -0.42 1.57 16 41 H 0.09 1.27 8.03 -51.93 -0.42 0.85 16 42 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 43 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 355.60 15.07 5.36 5.36 Total: -1.00 -31.40 355.60 -10.45 -41.85 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -7.54 Total: 2.56 kcal Atomic # 6 Polarization: -12.49 SS G_CDS: -2.90 Total: -15.39 kcal Atomic # 7 Polarization: -49.92 SS G_CDS: -0.70 Total: -50.62 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -4.68 Total: 16.23 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.40 -10.45 -41.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122728569.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.809 kcal (2) G-P(sol) polarization free energy of solvation -31.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds