Wall clock time and date at job start Mon Mar 30 2020 02:39:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30499 * 125.64834 * 2 1 4 4 C 1.34127 * 109.25338 * 180.29398 * 3 2 1 5 5 C 1.34666 * 108.02402 * 359.72833 * 4 3 2 6 6 N 1.35044 * 125.65195 * 179.83012 * 2 1 3 7 7 C 1.46501 * 126.39364 * 359.97057 * 6 2 1 8 8 C 1.53005 * 109.46906 * 84.71914 * 7 6 2 9 9 C 1.53000 * 109.47070 * 179.97438 * 8 7 6 10 10 N 1.46895 * 109.46839 * 180.02562 * 9 8 7 11 11 C 1.46907 * 110.99750 * 189.99866 * 10 9 8 12 12 C 1.50700 * 109.46942 * 75.47744 * 11 10 9 13 13 H 1.08002 * 120.00244 * 356.97740 * 12 11 10 14 14 C 1.37878 * 120.00281 * 176.97060 * 12 11 10 15 15 N 1.31509 * 120.00752 * 180.02562 * 14 12 11 16 16 Si 1.86802 * 119.99423 * 0.02562 * 14 12 11 17 17 H 1.48494 * 109.47307 * 90.00209 * 16 14 12 18 18 H 1.48505 * 109.46944 * 210.00178 * 16 14 12 19 19 H 1.48498 * 109.47552 * 329.99792 * 16 14 12 20 20 C 1.46897 * 111.00479 * 66.04600 * 10 9 8 21 21 C 1.53002 * 109.47271 * 195.57077 * 20 10 9 22 22 C 1.52996 * 117.49721 * 244.13246 * 21 20 10 23 23 C 1.53001 * 60.00295 * 252.51314 * 22 21 20 24 24 H 1.08995 * 109.47226 * 270.17170 * 1 2 3 25 25 H 1.09001 * 109.47332 * 30.17503 * 1 2 3 26 26 H 1.09005 * 109.47321 * 150.16921 * 1 2 3 27 27 H 1.08005 * 125.98701 * 179.72988 * 4 3 2 28 28 H 1.07998 * 126.59523 * 179.97438 * 5 4 3 29 29 H 1.08994 * 109.47452 * 324.72096 * 7 6 2 30 30 H 1.08997 * 109.46884 * 204.71803 * 7 6 2 31 31 H 1.09007 * 109.47196 * 59.99771 * 8 7 6 32 32 H 1.08997 * 109.47259 * 299.99660 * 8 7 6 33 33 H 1.08998 * 109.46994 * 59.99774 * 9 8 7 34 34 H 1.08997 * 109.47007 * 300.00065 * 9 8 7 35 35 H 1.08997 * 109.47257 * 195.48041 * 11 10 9 36 36 H 1.08996 * 109.46889 * 315.48025 * 11 10 9 37 37 H 0.96998 * 120.00623 * 180.02562 * 15 14 12 38 38 H 1.08994 * 109.47047 * 315.57380 * 20 10 9 39 39 H 1.09005 * 109.47117 * 75.57262 * 20 10 9 40 40 H 1.08994 * 115.54626 * 29.84790 * 21 20 10 41 41 H 1.08997 * 117.50488 * 0.02562 * 22 21 20 42 42 H 1.09001 * 117.49514 * 145.02220 * 22 21 20 43 43 H 1.08997 * 117.49688 * 252.51483 * 23 22 21 44 44 H 1.08997 * 117.49455 * 107.48984 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2675 1.0604 0.0000 4 6 3.5543 0.6819 -0.0065 5 6 3.5926 -0.6642 -0.0046 6 7 2.2941 -1.0973 0.0033 7 6 1.8425 -2.4910 0.0080 8 6 1.5584 -2.9399 -1.4269 9 6 1.0873 -4.3956 -1.4220 10 7 0.8152 -4.8267 -2.7997 11 6 0.1395 -6.1310 -2.8193 12 6 -1.3047 -5.9545 -2.4265 13 1 -1.6710 -4.9799 -2.1391 14 6 -2.1585 -7.0370 -2.4341 15 7 -3.4189 -6.8830 -2.0918 16 14 -1.5249 -8.7227 -2.9308 17 1 -1.0277 -9.4385 -1.7286 18 1 -2.6261 -9.5024 -3.5511 19 1 -0.4173 -8.5672 -3.9077 20 6 2.0503 -4.8617 -3.5942 21 6 1.6982 -4.9293 -5.0816 22 6 2.1128 -6.1861 -5.8492 23 6 2.8523 -4.8675 -6.0842 24 1 -0.3633 0.0031 1.0276 25 1 -0.3634 0.8884 -0.5165 26 1 -0.3634 -0.8915 -0.5112 27 1 4.4097 1.3411 -0.0122 28 1 4.4776 -1.2832 -0.0089 29 1 0.9327 -2.5761 0.6021 30 1 2.6187 -3.1229 0.4394 31 1 2.4682 -2.8547 -2.0211 32 1 0.7821 -2.3079 -1.8583 33 1 0.1777 -4.4811 -0.8277 34 1 1.8639 -5.0272 -0.9907 35 1 0.1941 -6.5534 -3.8226 36 1 0.6280 -6.8039 -2.1147 37 1 -4.0195 -7.6447 -2.0969 38 1 2.6332 -3.9615 -3.3993 39 1 2.6346 -5.7397 -3.3188 40 1 0.7596 -4.4529 -5.3646 41 1 2.6360 -6.9650 -5.2946 42 1 1.4467 -6.5370 -6.6374 43 1 2.6727 -4.3509 -7.0270 44 1 3.8623 -4.7787 -5.6842 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000122728569.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:11 Heat of formation + Delta-G solvation = 66.068071 kcal Electronic energy + Delta-G solvation = -21524.013539 eV Core-core repulsion = 18477.385969 eV Total energy + Delta-G solvation = -3046.627569 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.99691 -39.53105 -37.38750 -35.83382 -34.54481 -32.60887 -32.07414 -29.99423 -27.97568 -27.41243 -25.64398 -23.35058 -23.07010 -22.25233 -22.09738 -21.02106 -20.59603 -18.95989 -17.94921 -17.06367 -16.64869 -16.31723 -16.17535 -15.86197 -15.27725 -15.22500 -14.90768 -14.63801 -14.43969 -14.13803 -13.87933 -13.75389 -13.45779 -13.24344 -13.12928 -13.04041 -12.69884 -12.60822 -12.37392 -12.27361 -11.99725 -11.81932 -11.70919 -11.48721 -11.10416 -10.92311 -10.76564 -10.66158 -10.53925 -9.24386 -9.00571 -8.25616 -6.27321 1.13120 1.33583 1.36572 1.46282 1.87892 2.20115 2.35366 2.89395 3.07307 3.18695 3.63977 3.72163 3.83667 3.94602 4.00548 4.07911 4.18836 4.23713 4.30074 4.46518 4.49937 4.52452 4.60016 4.64848 4.69655 4.71937 4.77671 4.82943 4.89051 4.93483 4.99245 5.03936 5.05372 5.17360 5.26307 5.27221 5.40306 5.44919 5.60439 5.89727 6.02995 6.27784 6.44702 6.67722 6.79187 7.18595 7.36098 8.90916 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.015339 B = 0.004508 C = 0.003727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.013378 B = 6209.859655 C = 7510.850416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.190 3.810 3 N -0.534 5.534 4 C -0.057 4.057 5 C -0.053 4.053 6 N -0.452 5.452 7 C 0.108 3.892 8 C -0.112 4.112 9 C 0.069 3.931 10 N -0.541 5.541 11 C 0.175 3.825 12 C -0.507 4.507 13 H 0.039 0.961 14 C 0.010 3.990 15 N -0.948 5.948 16 Si 0.938 3.062 17 H -0.268 1.268 18 H -0.285 1.285 19 H -0.249 1.249 20 C 0.086 3.914 21 C -0.160 4.160 22 C -0.192 4.192 23 C -0.154 4.154 24 H 0.091 0.909 25 H 0.089 0.911 26 H 0.077 0.923 27 H 0.185 0.815 28 H 0.204 0.796 29 H 0.098 0.902 30 H 0.116 0.884 31 H 0.073 0.927 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.039 0.961 35 H 0.031 0.969 36 H -0.015 1.015 37 H 0.265 0.735 38 H 0.088 0.912 39 H 0.029 0.971 40 H 0.088 0.912 41 H 0.091 0.909 42 H 0.089 0.911 43 H 0.103 0.897 44 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.546 6.369 0.909 17.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.072 4.072 3 N -0.255 5.255 4 C -0.204 4.204 5 C -0.186 4.186 6 N -0.134 5.134 7 C -0.015 4.015 8 C -0.151 4.151 9 C -0.060 4.060 10 N -0.265 5.265 11 C 0.048 3.952 12 C -0.546 4.546 13 H 0.058 0.942 14 C -0.187 4.187 15 N -0.589 5.589 16 Si 0.762 3.238 17 H -0.193 1.193 18 H -0.211 1.211 19 H -0.173 1.173 20 C -0.041 4.041 21 C -0.179 4.179 22 C -0.229 4.229 23 C -0.191 4.191 24 H 0.109 0.891 25 H 0.108 0.892 26 H 0.096 0.904 27 H 0.202 0.798 28 H 0.221 0.779 29 H 0.116 0.884 30 H 0.134 0.866 31 H 0.092 0.908 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.057 0.943 35 H 0.049 0.951 36 H 0.002 0.998 37 H 0.074 0.926 38 H 0.106 0.894 39 H 0.047 0.953 40 H 0.107 0.893 41 H 0.110 0.890 42 H 0.107 0.893 43 H 0.122 0.878 44 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 15.748 7.269 0.731 17.361 hybrid contribution 0.299 -2.181 0.174 2.208 sum 16.047 5.088 0.905 16.859 Atomic orbital electron populations 1.20276 0.84010 1.04395 1.04254 1.23675 0.96610 0.81696 1.05264 1.70198 1.03587 1.29666 1.22007 1.22701 0.94683 0.93998 1.09018 1.23213 0.87737 0.96854 1.10828 1.45613 1.06674 1.07734 1.53410 1.21966 1.03076 0.78269 0.98169 1.21790 1.01798 0.95825 0.95655 1.21844 0.99800 0.94487 0.89854 1.61763 1.22820 1.29805 1.12137 1.19915 0.92772 0.86760 0.95754 1.21272 0.94069 0.95376 1.43863 0.94247 1.25753 0.94794 1.02986 0.95152 1.70038 1.05734 1.32424 1.50753 0.85850 0.78716 0.79668 0.79569 1.19298 1.21102 1.17273 1.21723 0.90704 1.00473 0.91219 1.22235 0.99667 1.02869 0.93133 1.23061 1.04342 0.91908 1.03583 1.23007 0.96570 0.99393 1.00178 0.89090 0.89222 0.90374 0.79754 0.77930 0.88352 0.86592 0.90800 0.92257 0.91951 0.94286 0.95069 0.99782 0.92616 0.89400 0.95255 0.89341 0.89041 0.89281 0.87824 0.87425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.59 10.04 71.23 0.72 -0.87 16 2 C 0.19 5.09 7.90 138.13 1.09 6.18 16 3 N -0.53 -15.92 11.25 -188.13 -2.12 -18.03 16 4 C -0.06 -1.37 11.87 83.52 0.99 -0.38 16 5 C -0.05 -1.10 11.58 83.09 0.96 -0.14 16 6 N -0.45 -10.42 2.75 -514.29 -1.41 -11.83 16 7 C 0.11 2.15 5.68 86.38 0.49 2.64 16 8 C -0.11 -2.79 5.50 30.60 0.17 -2.62 16 9 C 0.07 2.17 4.78 86.30 0.41 2.58 16 10 N -0.54 -20.39 4.39 -900.81 -3.95 -24.34 16 11 C 0.18 7.95 3.67 85.56 0.31 8.27 16 12 C -0.51 -28.24 9.14 25.60 0.23 -28.00 16 13 H 0.04 2.45 7.94 -2.91 -0.02 2.42 16 14 C 0.01 0.58 5.47 84.66 0.46 1.05 16 15 N -0.95 -58.19 13.96 21.45 0.30 -57.90 16 16 Si 0.94 43.03 27.53 68.60 1.89 44.91 16 17 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 18 H -0.29 -12.98 7.11 99.48 0.71 -12.28 16 19 H -0.25 -10.66 6.46 99.48 0.64 -10.02 16 20 C 0.09 2.60 5.11 86.30 0.44 3.04 16 21 C -0.16 -4.80 4.96 -10.79 -0.05 -4.86 16 22 C -0.19 -5.16 9.97 30.59 0.31 -4.85 16 23 C -0.15 -3.43 10.25 30.60 0.31 -3.12 16 24 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 25 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 26 H 0.08 1.75 7.34 -2.38 -0.02 1.74 16 27 H 0.19 3.42 8.06 -2.91 -0.02 3.39 16 28 H 0.20 2.63 8.06 -2.91 -0.02 2.61 16 29 H 0.10 1.95 7.94 -2.39 -0.02 1.93 16 30 H 0.12 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.07 1.72 6.29 -2.38 -0.01 1.70 16 32 H 0.06 1.73 7.64 -2.39 -0.02 1.71 16 33 H 0.06 2.31 7.34 -2.39 -0.02 2.30 16 34 H 0.04 1.10 8.12 -2.39 -0.02 1.08 16 35 H 0.03 1.45 5.78 -2.39 -0.01 1.43 16 36 H -0.02 -0.69 7.58 -2.39 -0.02 -0.71 16 37 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 38 H 0.09 2.27 5.94 -2.39 -0.01 2.25 16 39 H 0.03 0.86 7.79 -2.38 -0.02 0.84 16 40 H 0.09 3.10 8.14 -2.39 -0.02 3.08 16 41 H 0.09 2.38 8.03 -2.39 -0.02 2.37 16 42 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 43 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 44 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 Total: -1.00 -69.67 355.60 2.44 -67.22 By element: Atomic # 1 Polarization: 20.16 SS G_CDS: 0.89 Total: 21.05 kcal Atomic # 6 Polarization: -27.93 SS G_CDS: 6.85 Total: -21.08 kcal Atomic # 7 Polarization: -104.92 SS G_CDS: -7.18 Total: -112.10 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 1.89 Total: 44.91 kcal Total: -69.67 2.44 -67.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122728569.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.290 kcal (2) G-P(sol) polarization free energy of solvation -69.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.222 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds