Wall clock time and date at job start Mon Mar 30 2020 01:47:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47519 * 2 1 4 4 O 1.42897 * 109.46992 * 119.99924 * 2 1 3 5 5 C 1.35895 * 117.00030 * 154.98226 * 4 2 1 6 6 C 1.38759 * 120.05770 * 5.49331 * 5 4 2 7 7 C 1.38122 * 119.94578 * 180.02562 * 6 5 4 8 8 C 1.38286 * 120.05738 * 359.97240 * 7 6 5 9 9 C 1.38246 * 120.11192 * 0.02804 * 8 7 6 10 10 C 1.38167 * 120.05275 * 359.97438 * 9 8 7 11 11 C 1.50700 * 120.02622 * 179.97438 * 10 9 8 12 12 N 1.46902 * 109.47412 * 259.99895 * 11 10 9 13 13 C 1.46902 * 110.99882 * 66.04174 * 12 11 10 14 14 C 1.46898 * 111.00619 * 190.00163 * 12 11 10 15 15 H 1.08995 * 109.46798 * 299.99696 * 14 12 11 16 16 C 1.52998 * 109.46839 * 59.99599 * 14 12 11 17 17 C 1.50701 * 109.47287 * 179.97438 * 14 12 11 18 18 H 1.08001 * 119.99543 * 359.97438 * 17 14 12 19 19 C 1.37872 * 120.00011 * 179.97438 * 17 14 12 20 20 N 1.31515 * 119.99977 * 0.02562 * 19 17 14 21 21 Si 1.86799 * 120.00193 * 179.97438 * 19 17 14 22 22 H 1.48500 * 109.47140 * 89.99880 * 21 19 17 23 23 H 1.48496 * 109.47340 * 210.00494 * 21 19 17 24 24 H 1.48507 * 109.46863 * 330.00213 * 21 19 17 25 25 H 1.08995 * 109.46805 * 300.00777 * 1 2 3 26 26 H 1.09007 * 109.46944 * 59.99988 * 1 2 3 27 27 H 1.08999 * 109.47395 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46829 * 239.99680 * 2 1 3 29 29 H 1.09001 * 109.47371 * 180.02562 * 3 2 1 30 30 H 1.09007 * 109.47022 * 299.99963 * 3 2 1 31 31 H 1.08998 * 109.47092 * 59.99396 * 3 2 1 32 32 H 1.07996 * 120.02366 * 359.97438 * 6 5 4 33 33 H 1.07999 * 119.97162 * 180.02562 * 7 6 5 34 34 H 1.07996 * 119.94764 * 179.74824 * 8 7 6 35 35 H 1.08003 * 119.97512 * 179.97438 * 9 8 7 36 36 H 1.09001 * 109.47492 * 19.99711 * 11 10 9 37 37 H 1.09003 * 109.47573 * 139.99894 * 11 10 9 38 38 H 1.09001 * 109.47257 * 60.00559 * 13 12 11 39 39 H 1.09006 * 109.46827 * 180.02562 * 13 12 11 40 40 H 1.08995 * 109.47449 * 300.00405 * 13 12 11 41 41 H 1.09005 * 109.46436 * 180.02562 * 16 14 12 42 42 H 1.08995 * 109.47536 * 299.99718 * 16 14 12 43 43 H 1.08997 * 109.46979 * 60.00811 * 16 14 12 44 44 H 0.96996 * 120.00153 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 3.2464 -1.2251 1.0978 6 6 4.0352 -1.0234 -0.0259 7 6 5.2951 -1.5854 -0.0938 8 6 5.7709 -2.3480 0.9571 9 6 4.9871 -2.5504 2.0777 10 6 3.7261 -1.9905 2.1505 11 6 2.8719 -2.2120 3.3721 12 7 1.8898 -3.2695 3.0979 13 6 2.5532 -4.5645 2.8957 14 6 0.8908 -3.3517 4.1717 15 1 1.3891 -3.5738 5.1153 16 6 0.1541 -2.0156 4.2862 17 6 -0.0977 -4.4444 3.8557 18 1 0.0057 -5.0199 2.9477 19 6 -1.1339 -4.7094 4.7257 20 7 -1.2600 -4.0081 5.8311 21 14 -2.3596 -6.0634 4.3337 22 1 -1.8798 -7.3466 4.9066 23 1 -3.6797 -5.7216 4.9216 24 1 -2.4938 -6.1983 2.8608 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 3.1301 1.4424 -0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 3.6639 -0.4283 -0.8470 33 1 5.9095 -1.4284 -0.9680 34 1 6.7546 -2.7900 0.9004 35 1 5.3607 -3.1468 2.8970 36 1 3.5041 -2.5113 4.2081 37 1 2.3506 -1.2883 3.6234 38 1 3.1118 -4.8306 3.7931 39 1 1.8032 -5.3293 2.6940 40 1 3.2368 -4.4944 2.0497 41 1 -0.5869 -2.0765 5.0833 42 1 0.8687 -1.2250 4.5146 43 1 -0.3443 -1.7935 3.3426 44 1 -1.9892 -4.1943 6.4430 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000129631275.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:18 Heat of formation + Delta-G solvation = -9.073443 kcal Electronic energy + Delta-G solvation = -22549.115365 eV Core-core repulsion = 19466.936664 eV Total energy + Delta-G solvation = -3082.178701 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.13953 -37.70412 -36.53272 -33.24318 -32.76401 -31.04555 -29.61359 -28.86423 -27.20282 -26.60081 -24.55403 -23.21974 -23.12711 -21.03332 -20.52025 -19.25315 -17.82928 -16.27606 -15.82202 -15.42582 -15.29533 -14.97299 -14.49824 -14.06754 -13.85495 -13.51167 -13.40550 -13.07586 -12.52930 -12.39561 -12.30098 -12.20890 -12.08333 -11.74658 -11.63978 -11.37190 -11.08371 -10.96592 -10.85301 -10.65769 -10.59942 -10.49155 -10.29411 -9.99993 -9.91561 -9.68924 -8.81689 -8.59733 -8.34805 -7.79532 -7.00923 -5.94272 -3.98009 1.55633 1.72242 3.33830 3.40253 3.44660 3.48669 4.00510 4.47071 4.83215 4.95776 5.01121 5.04654 5.15420 5.22214 5.34345 5.41422 5.50179 5.54420 5.61545 5.71988 5.76986 5.88266 5.96930 6.02709 6.15364 6.16009 6.32308 6.34511 6.46120 6.50584 6.59151 6.69368 6.79735 6.89985 7.00254 7.07845 7.20000 7.28144 7.63515 7.80563 7.84745 7.91001 8.33506 8.43320 8.71412 9.08901 9.66337 11.12479 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.018121 B = 0.005478 C = 0.004678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.817678 B = 5109.840599 C = 5984.383175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.078 3.922 3 C -0.179 4.179 4 O -0.286 6.286 5 C 0.155 3.845 6 C -0.219 4.219 7 C -0.091 4.091 8 C -0.165 4.165 9 C -0.080 4.080 10 C -0.096 4.096 11 C 0.095 3.905 12 N -0.524 5.524 13 C 0.037 3.963 14 C 0.213 3.787 15 H -0.005 1.005 16 C -0.128 4.128 17 C -0.498 4.498 18 H 0.062 0.938 19 C 0.058 3.942 20 N -0.894 5.894 21 Si 0.894 3.106 22 H -0.282 1.282 23 H -0.287 1.287 24 H -0.274 1.274 25 H 0.067 0.933 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.060 0.940 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.124 0.876 33 H 0.116 0.884 34 H 0.117 0.883 35 H 0.122 0.878 36 H 0.025 0.975 37 H 0.085 0.915 38 H 0.007 0.993 39 H 0.074 0.926 40 H 0.042 0.958 41 H 0.082 0.918 42 H 0.007 0.993 43 H 0.035 0.965 44 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.948 8.179 -11.348 17.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.021 3.979 3 C -0.237 4.237 4 O -0.198 6.198 5 C 0.109 3.891 6 C -0.238 4.238 7 C -0.109 4.109 8 C -0.183 4.183 9 C -0.099 4.099 10 C -0.097 4.097 11 C -0.032 4.032 12 N -0.249 5.249 13 C -0.112 4.112 14 C 0.107 3.893 15 H 0.013 0.987 16 C -0.186 4.186 17 C -0.537 4.537 18 H 0.080 0.920 19 C -0.143 4.143 20 N -0.534 5.534 21 Si 0.723 3.277 22 H -0.209 1.209 23 H -0.213 1.213 24 H -0.199 1.199 25 H 0.086 0.914 26 H 0.088 0.912 27 H 0.090 0.910 28 H 0.086 0.914 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.142 0.858 33 H 0.134 0.866 34 H 0.135 0.865 35 H 0.140 0.860 36 H 0.043 0.957 37 H 0.104 0.896 38 H 0.026 0.974 39 H 0.093 0.907 40 H 0.061 0.939 41 H 0.100 0.900 42 H 0.026 0.974 43 H 0.055 0.945 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 9.397 8.322 -11.444 16.986 hybrid contribution -0.119 -0.892 0.337 0.961 sum 9.278 7.430 -11.107 16.268 Atomic orbital electron populations 1.21819 0.92415 1.03807 1.02452 1.22368 0.95703 0.92034 0.87791 1.22397 1.01803 0.96566 1.02885 1.86312 1.28897 1.67243 1.37381 1.18782 0.84470 0.92355 0.93514 1.21223 0.96573 1.07018 0.98949 1.20793 0.95025 0.96947 0.98170 1.20911 1.00307 1.02361 0.94751 1.20912 0.93056 0.97964 0.97955 1.19402 0.95053 0.98579 0.96645 1.20927 0.92875 0.98142 0.91302 1.62118 1.12700 1.03177 1.46869 1.22231 0.97993 0.93144 0.97817 1.19234 0.88696 0.94620 0.86735 0.98731 1.21793 0.99963 0.95223 1.01632 1.21157 1.10189 1.16236 1.06119 0.91966 1.24919 0.97715 0.96535 0.95098 1.69900 1.32092 1.40149 1.11220 0.86557 0.80623 0.82056 0.78513 1.20874 1.21322 1.19914 0.91375 0.91228 0.91024 0.91418 0.92128 0.91450 0.91417 0.85812 0.86559 0.86537 0.85995 0.95689 0.89645 0.97443 0.90704 0.93877 0.89989 0.97389 0.94550 0.93109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.56 37.16 0.36 -1.49 16 2 C 0.08 1.01 2.84 -26.73 -0.08 0.93 16 3 C -0.18 -1.90 9.17 37.16 0.34 -1.56 16 4 O -0.29 -4.88 9.03 -19.41 -0.18 -5.06 16 5 C 0.16 2.57 6.57 -39.21 -0.26 2.31 16 6 C -0.22 -3.01 8.25 -39.43 -0.33 -3.34 16 7 C -0.09 -1.14 10.04 -39.61 -0.40 -1.54 16 8 C -0.16 -2.14 10.04 -39.56 -0.40 -2.53 16 9 C -0.08 -1.20 8.73 -39.60 -0.35 -1.54 16 10 C -0.10 -1.66 4.59 -104.47 -0.48 -2.14 16 11 C 0.10 1.89 4.57 -4.97 -0.02 1.87 16 12 N -0.52 -11.87 4.61 -237.73 -1.10 -12.96 16 13 C 0.04 0.77 9.00 60.07 0.54 1.31 16 14 C 0.21 5.55 2.06 -68.87 -0.14 5.41 16 15 H 0.00 -0.14 8.14 -51.93 -0.42 -0.56 16 16 C -0.13 -3.24 8.76 37.16 0.33 -2.91 16 17 C -0.50 -13.92 7.88 -34.44 -0.27 -14.19 16 18 H 0.06 1.74 6.41 -52.49 -0.34 1.41 16 19 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 20 N -0.89 -25.88 11.32 55.43 0.63 -25.25 16 21 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 22 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 24 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 25 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 28 H 0.07 0.82 6.31 -51.93 -0.33 0.49 16 29 H 0.06 0.64 6.92 -51.93 -0.36 0.28 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.12 1.44 5.43 -52.49 -0.29 1.16 16 33 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 34 H 0.12 1.22 8.06 -52.49 -0.42 0.79 16 35 H 0.12 1.67 8.04 -52.48 -0.42 1.25 16 36 H 0.03 0.49 7.98 -51.93 -0.41 0.07 16 37 H 0.09 1.78 5.54 -51.93 -0.29 1.49 16 38 H 0.01 0.15 8.14 -51.93 -0.42 -0.28 16 39 H 0.07 1.67 6.10 -51.93 -0.32 1.35 16 40 H 0.04 0.81 6.65 -51.93 -0.35 0.47 16 41 H 0.08 2.25 6.07 -51.93 -0.32 1.93 16 42 H 0.01 0.17 6.20 -51.93 -0.32 -0.15 16 43 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 344.41 15.07 5.19 5.19 Total: -1.00 -30.07 344.41 -8.82 -38.88 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -7.09 Total: 0.44 kcal Atomic # 6 Polarization: -16.62 SS G_CDS: -1.25 Total: -17.87 kcal Atomic # 7 Polarization: -37.74 SS G_CDS: -0.47 Total: -38.21 kcal Atomic # 8 Polarization: -4.88 SS G_CDS: -0.18 Total: -5.06 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.07 -8.82 -38.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129631275.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.811 kcal (2) G-P(sol) polarization free energy of solvation -30.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds