Wall clock time and date at job start Mon Mar 30 2020 01:47:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47519 * 2 1 4 4 O 1.42897 * 109.46992 * 119.99924 * 2 1 3 5 5 C 1.35895 * 117.00030 * 154.98226 * 4 2 1 6 6 C 1.38759 * 120.05770 * 5.49331 * 5 4 2 7 7 C 1.38122 * 119.94578 * 180.02562 * 6 5 4 8 8 C 1.38286 * 120.05738 * 359.97240 * 7 6 5 9 9 C 1.38246 * 120.11192 * 0.02804 * 8 7 6 10 10 C 1.38167 * 120.05275 * 359.97438 * 9 8 7 11 11 C 1.50700 * 120.02622 * 179.97438 * 10 9 8 12 12 N 1.46902 * 109.47412 * 259.99895 * 11 10 9 13 13 C 1.46902 * 110.99882 * 66.04174 * 12 11 10 14 14 C 1.46898 * 111.00619 * 190.00163 * 12 11 10 15 15 H 1.08995 * 109.46798 * 299.99696 * 14 12 11 16 16 C 1.52998 * 109.46839 * 59.99599 * 14 12 11 17 17 C 1.50701 * 109.47287 * 179.97438 * 14 12 11 18 18 H 1.08001 * 119.99543 * 359.97438 * 17 14 12 19 19 C 1.37872 * 120.00011 * 179.97438 * 17 14 12 20 20 N 1.31515 * 119.99977 * 0.02562 * 19 17 14 21 21 Si 1.86799 * 120.00193 * 179.97438 * 19 17 14 22 22 H 1.48500 * 109.47140 * 89.99880 * 21 19 17 23 23 H 1.48496 * 109.47340 * 210.00494 * 21 19 17 24 24 H 1.48507 * 109.46863 * 330.00213 * 21 19 17 25 25 H 1.08995 * 109.46805 * 300.00777 * 1 2 3 26 26 H 1.09007 * 109.46944 * 59.99988 * 1 2 3 27 27 H 1.08999 * 109.47395 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46829 * 239.99680 * 2 1 3 29 29 H 1.09001 * 109.47371 * 180.02562 * 3 2 1 30 30 H 1.09007 * 109.47022 * 299.99963 * 3 2 1 31 31 H 1.08998 * 109.47092 * 59.99396 * 3 2 1 32 32 H 1.07996 * 120.02366 * 359.97438 * 6 5 4 33 33 H 1.07999 * 119.97162 * 180.02562 * 7 6 5 34 34 H 1.07996 * 119.94764 * 179.74824 * 8 7 6 35 35 H 1.08003 * 119.97512 * 179.97438 * 9 8 7 36 36 H 1.09001 * 109.47492 * 19.99711 * 11 10 9 37 37 H 1.09003 * 109.47573 * 139.99894 * 11 10 9 38 38 H 1.09001 * 109.47257 * 60.00559 * 13 12 11 39 39 H 1.09006 * 109.46827 * 180.02562 * 13 12 11 40 40 H 1.08995 * 109.47449 * 300.00405 * 13 12 11 41 41 H 1.09005 * 109.46436 * 180.02562 * 16 14 12 42 42 H 1.08995 * 109.47536 * 299.99718 * 16 14 12 43 43 H 1.08997 * 109.46979 * 60.00811 * 16 14 12 44 44 H 0.96996 * 120.00153 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 3.2464 -1.2251 1.0978 6 6 4.0352 -1.0234 -0.0259 7 6 5.2951 -1.5854 -0.0938 8 6 5.7709 -2.3480 0.9571 9 6 4.9871 -2.5504 2.0777 10 6 3.7261 -1.9905 2.1505 11 6 2.8719 -2.2120 3.3721 12 7 1.8898 -3.2695 3.0979 13 6 2.5532 -4.5645 2.8957 14 6 0.8908 -3.3517 4.1717 15 1 1.3891 -3.5738 5.1153 16 6 0.1541 -2.0156 4.2862 17 6 -0.0977 -4.4444 3.8557 18 1 0.0057 -5.0199 2.9477 19 6 -1.1339 -4.7094 4.7257 20 7 -1.2600 -4.0081 5.8311 21 14 -2.3596 -6.0634 4.3337 22 1 -1.8798 -7.3466 4.9066 23 1 -3.6797 -5.7216 4.9216 24 1 -2.4938 -6.1983 2.8608 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 3.1301 1.4424 -0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 3.6639 -0.4283 -0.8470 33 1 5.9095 -1.4284 -0.9680 34 1 6.7546 -2.7900 0.9004 35 1 5.3607 -3.1468 2.8970 36 1 3.5041 -2.5113 4.2081 37 1 2.3506 -1.2883 3.6234 38 1 3.1118 -4.8306 3.7931 39 1 1.8032 -5.3293 2.6940 40 1 3.2368 -4.4944 2.0497 41 1 -0.5869 -2.0765 5.0833 42 1 0.8687 -1.2250 4.5146 43 1 -0.3443 -1.7935 3.3426 44 1 -1.9892 -4.1943 6.4430 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000129631275.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:17 Heat of formation + Delta-G solvation = -26.325492 kcal Electronic energy + Delta-G solvation = -22549.863470 eV Core-core repulsion = 19466.936664 eV Total energy + Delta-G solvation = -3082.926806 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.28011 -39.04609 -38.08606 -34.96811 -34.04603 -32.48486 -30.87604 -30.65168 -28.33780 -28.06633 -26.52514 -24.92032 -24.18423 -22.41345 -21.56903 -21.08867 -18.94533 -18.35098 -17.22233 -16.83006 -16.53692 -16.30615 -15.83722 -15.65001 -15.32322 -15.11241 -14.75393 -14.25452 -14.12534 -13.87019 -13.55889 -13.41977 -13.16696 -13.09218 -12.93405 -12.82970 -12.71429 -12.68623 -12.52496 -12.21522 -12.06921 -12.04549 -11.90101 -11.71721 -11.53283 -11.29220 -10.87887 -10.52112 -9.73213 -8.95971 -8.83902 -8.09730 -6.21646 0.44866 0.63054 1.41329 1.42320 1.53342 2.42635 2.44637 2.88266 3.18013 3.57202 3.85059 3.92391 3.98047 4.07557 4.19438 4.29523 4.36638 4.44893 4.56220 4.64910 4.69330 4.72443 4.74025 4.77936 4.86315 4.90708 4.94567 5.01752 5.05709 5.07880 5.20248 5.25270 5.27172 5.32420 5.50067 5.53942 5.60472 5.67345 5.73581 5.80872 6.02165 6.26706 6.44473 6.70604 6.78410 6.93261 7.47054 8.96321 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.018121 B = 0.005478 C = 0.004678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.817678 B = 5109.840599 C = 5984.383175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.069 3.931 3 C -0.171 4.171 4 O -0.320 6.320 5 C 0.137 3.863 6 C -0.218 4.218 7 C -0.082 4.082 8 C -0.161 4.161 9 C -0.086 4.086 10 C -0.127 4.127 11 C 0.104 3.896 12 N -0.530 5.530 13 C 0.045 3.955 14 C 0.218 3.782 15 H -0.041 1.041 16 C -0.110 4.110 17 C -0.515 4.515 18 H 0.057 0.943 19 C 0.011 3.989 20 N -0.921 5.921 21 Si 0.961 3.039 22 H -0.275 1.275 23 H -0.282 1.282 24 H -0.270 1.270 25 H 0.053 0.947 26 H 0.103 0.897 27 H 0.046 0.954 28 H 0.080 0.920 29 H 0.062 0.938 30 H 0.095 0.905 31 H 0.055 0.945 32 H 0.146 0.854 33 H 0.154 0.846 34 H 0.147 0.853 35 H 0.127 0.873 36 H 0.022 0.978 37 H 0.067 0.933 38 H 0.006 0.994 39 H 0.058 0.942 40 H 0.066 0.934 41 H 0.059 0.941 42 H 0.022 0.978 43 H 0.028 0.972 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.311 8.302 -13.919 19.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.013 3.987 3 C -0.228 4.228 4 O -0.234 6.234 5 C 0.090 3.910 6 C -0.237 4.237 7 C -0.100 4.100 8 C -0.179 4.179 9 C -0.105 4.105 10 C -0.128 4.128 11 C -0.024 4.024 12 N -0.254 5.254 13 C -0.103 4.103 14 C 0.111 3.889 15 H -0.024 1.024 16 C -0.169 4.169 17 C -0.554 4.554 18 H 0.076 0.924 19 C -0.188 4.188 20 N -0.561 5.561 21 Si 0.786 3.214 22 H -0.201 1.201 23 H -0.208 1.208 24 H -0.194 1.194 25 H 0.072 0.928 26 H 0.122 0.878 27 H 0.065 0.935 28 H 0.098 0.902 29 H 0.081 0.919 30 H 0.114 0.886 31 H 0.074 0.926 32 H 0.163 0.837 33 H 0.171 0.829 34 H 0.165 0.835 35 H 0.145 0.855 36 H 0.040 0.960 37 H 0.085 0.915 38 H 0.025 0.975 39 H 0.076 0.924 40 H 0.084 0.916 41 H 0.077 0.923 42 H 0.041 0.959 43 H 0.047 0.953 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 10.778 8.452 -14.027 19.605 hybrid contribution -0.462 -0.880 1.091 1.476 sum 10.316 7.572 -12.936 18.196 Atomic orbital electron populations 1.21847 0.92587 1.02429 1.03440 1.22645 0.95663 0.93278 0.87079 1.22332 1.01837 0.94930 1.03689 1.86269 1.29596 1.67944 1.39555 1.19002 0.84811 0.92799 0.94350 1.21495 0.96790 1.06962 0.98424 1.21271 0.94591 0.95130 0.99003 1.21271 1.01163 1.01758 0.93753 1.21059 0.92423 0.97849 0.99137 1.19274 0.95996 1.01340 0.96230 1.20787 0.92348 0.96124 0.93107 1.62059 1.13614 1.04614 1.45134 1.22150 0.97640 0.91918 0.98630 1.19032 0.89255 0.94378 0.86208 1.02374 1.21558 0.99506 0.95632 1.00162 1.21385 1.10976 1.16912 1.06094 0.92450 1.25720 0.99431 0.98755 0.94862 1.70030 1.32693 1.41418 1.11975 0.85518 0.78217 0.79230 0.78427 1.20094 1.20757 1.19430 0.92766 0.87830 0.93512 0.90231 0.91925 0.88641 0.92572 0.83675 0.82878 0.83485 0.85486 0.96023 0.91484 0.97502 0.92371 0.91564 0.92273 0.95921 0.95298 0.92956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.60 9.56 71.98 0.69 -2.92 16 2 C 0.07 1.72 2.84 30.59 0.09 1.81 16 3 C -0.17 -3.30 9.17 71.98 0.66 -2.64 16 4 O -0.32 -11.03 9.03 -92.37 -0.83 -11.86 16 5 C 0.14 4.42 6.57 22.51 0.15 4.57 16 6 C -0.22 -5.40 8.25 22.37 0.18 -5.22 16 7 C -0.08 -1.71 10.04 22.25 0.22 -1.49 16 8 C -0.16 -3.61 10.04 22.28 0.22 -3.38 16 9 C -0.09 -2.44 8.73 22.25 0.19 -2.24 16 10 C -0.13 -4.39 4.59 -19.77 -0.09 -4.48 16 11 C 0.10 4.27 4.57 85.56 0.39 4.66 16 12 N -0.53 -24.78 4.61 -906.03 -4.18 -28.96 16 13 C 0.05 1.92 9.00 127.69 1.15 3.07 16 14 C 0.22 11.87 2.06 44.17 0.09 11.96 16 15 H -0.04 -2.49 8.14 -2.39 -0.02 -2.51 16 16 C -0.11 -5.85 8.76 71.98 0.63 -5.22 16 17 C -0.52 -29.60 7.88 25.60 0.20 -29.40 16 18 H 0.06 3.29 6.41 -2.91 -0.02 3.27 16 19 C 0.01 0.61 5.30 84.65 0.45 1.06 16 20 N -0.92 -54.67 11.32 21.45 0.24 -54.43 16 21 Si 0.96 44.88 29.54 68.60 2.03 46.91 16 22 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 23 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 24 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 25 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 26 H 0.10 1.78 8.14 -2.38 -0.02 1.76 16 27 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.08 1.76 6.31 -2.38 -0.02 1.74 16 29 H 0.06 1.18 6.92 -2.39 -0.02 1.17 16 30 H 0.09 1.29 8.14 -2.38 -0.02 1.27 16 31 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.15 2.87 5.43 -2.91 -0.02 2.86 16 33 H 0.15 2.10 8.06 -2.91 -0.02 2.07 16 34 H 0.15 2.38 8.06 -2.91 -0.02 2.36 16 35 H 0.13 3.35 8.04 -2.91 -0.02 3.32 16 36 H 0.02 0.88 7.98 -2.39 -0.02 0.86 16 37 H 0.07 2.93 5.54 -2.39 -0.01 2.92 16 38 H 0.01 0.27 8.14 -2.39 -0.02 0.26 16 39 H 0.06 2.64 6.10 -2.38 -0.01 2.63 16 40 H 0.07 2.48 6.65 -2.39 -0.02 2.47 16 41 H 0.06 3.39 6.07 -2.38 -0.01 3.37 16 42 H 0.02 1.08 6.20 -2.39 -0.01 1.07 16 43 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 44 H 0.26 14.69 8.31 -92.71 -0.77 13.91 16 Total: -1.00 -66.95 344.41 3.45 -63.49 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: 0.97 Total: 14.71 kcal Atomic # 6 Polarization: -35.09 SS G_CDS: 5.23 Total: -29.86 kcal Atomic # 7 Polarization: -79.45 SS G_CDS: -3.94 Total: -83.39 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: -0.83 Total: -11.86 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -66.95 3.45 -63.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129631275.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.168 kcal (2) G-P(sol) polarization free energy of solvation -66.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds