Wall clock time and date at job start Mon Mar 30 2020 02:34:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30843 * 125.90101 * 2 1 4 4 N 1.40092 * 108.20617 * 180.25411 * 3 2 1 5 5 H 0.96996 * 126.03643 * 179.69406 * 4 3 2 6 6 C 1.34949 * 107.92406 * 359.71662 * 4 3 2 7 7 C 1.50697 * 126.12661 * 180.02562 * 6 4 3 8 8 C 1.35320 * 107.74731 * 359.97438 * 6 4 3 9 9 C 1.50695 * 126.03963 * 180.02562 * 8 6 4 10 10 H 1.09001 * 110.45876 * 344.03684 * 9 8 6 11 11 C 1.54377 * 110.41311 * 106.45657 * 9 8 6 12 12 C 1.54257 * 105.06382 * 142.63362 * 11 9 8 13 13 C 1.54381 * 105.14978 * 359.94367 * 12 11 9 14 14 N 1.48567 * 110.41156 * 221.62662 * 9 8 6 15 15 C 1.46900 * 110.99718 * 82.17828 * 14 9 8 16 16 C 1.52999 * 109.46697 * 189.99889 * 15 14 9 17 17 C 1.53004 * 109.47231 * 180.02562 * 16 15 14 18 18 C 1.50698 * 109.47407 * 180.02562 * 17 16 15 19 19 H 1.07999 * 119.99714 * 359.97438 * 18 17 16 20 20 C 1.37884 * 119.99881 * 180.02562 * 18 17 16 21 21 N 1.31509 * 119.99673 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99664 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.47320 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.46927 * 120.00302 * 22 20 18 25 25 H 1.48504 * 109.46839 * 240.00112 * 22 20 18 26 26 H 1.08993 * 109.47253 * 270.21678 * 1 2 3 27 27 H 1.09001 * 109.46846 * 30.21730 * 1 2 3 28 28 H 1.09005 * 109.46851 * 150.21169 * 1 2 3 29 29 H 1.08993 * 109.46963 * 269.97845 * 7 6 4 30 30 H 1.09005 * 109.46520 * 29.97457 * 7 6 4 31 31 H 1.09000 * 109.47013 * 149.97472 * 7 6 4 32 32 H 1.08995 * 110.32829 * 23.72997 * 11 9 8 33 33 H 1.09013 * 110.40613 * 261.57126 * 11 9 8 34 34 H 1.09002 * 110.32715 * 118.89422 * 12 11 9 35 35 H 1.08998 * 110.32251 * 240.99949 * 12 11 9 36 36 H 1.09004 * 110.40867 * 94.98012 * 13 12 11 37 37 H 1.08996 * 110.41187 * 217.42234 * 13 12 11 38 38 H 1.08997 * 109.47620 * 310.00301 * 15 14 9 39 39 H 1.08999 * 109.47148 * 70.00734 * 15 14 9 40 40 H 1.09001 * 109.47808 * 300.00257 * 16 15 14 41 41 H 1.08997 * 109.47144 * 60.00574 * 16 15 14 42 42 H 1.09001 * 109.46812 * 300.00718 * 17 16 15 43 43 H 1.09002 * 109.47047 * 59.99836 * 17 16 15 44 44 H 0.97003 * 119.99377 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6088 0.6341 -0.0059 5 1 4.3909 1.2079 -0.0114 6 6 3.6143 -0.7154 -0.0031 7 6 4.8350 -1.5990 -0.0069 8 6 2.3271 -1.1330 0.0049 9 6 1.8599 -2.5657 0.0111 10 1 2.6738 -3.2331 -0.2725 11 6 1.3108 -2.9470 1.4026 12 6 0.1077 -3.8700 1.1197 13 6 0.0281 -3.9690 -0.4189 14 7 0.7048 -2.7380 -0.9072 15 6 1.1558 -2.9001 -2.2958 16 6 -0.0492 -2.8246 -3.2354 17 6 0.4203 -2.9941 -4.6817 18 6 -0.7665 -2.9190 -5.6073 19 1 -1.7567 -2.7662 -5.2043 20 6 -0.5882 -3.0466 -6.9686 21 7 0.6174 -3.2343 -7.4591 22 14 -2.0596 -2.9543 -8.1159 23 1 -3.2951 -2.7409 -7.3203 24 1 -1.8787 -1.8248 -9.0628 25 1 -2.1745 -4.2245 -8.8766 26 1 -0.3633 0.0039 1.0276 27 1 -0.3633 0.8880 -0.5172 28 1 -0.3633 -0.8919 -0.5106 29 1 5.1243 -1.8145 -1.0354 30 1 5.6536 -1.0897 0.5017 31 1 4.6100 -2.5317 0.5104 32 1 0.9862 -2.0554 1.9389 33 1 2.0690 -3.4789 1.9777 34 1 0.2759 -4.8553 1.5543 35 1 -0.8073 -3.4322 1.5186 36 1 0.5545 -4.8565 -0.7704 37 1 -1.0116 -3.9884 -0.7453 38 1 1.8605 -2.1065 -2.5440 39 1 1.6442 -3.8681 -2.4085 40 1 -0.7540 -3.6182 -2.9873 41 1 -0.5376 -1.8567 -3.1228 42 1 1.1253 -2.2007 -4.9302 43 1 0.9086 -3.9621 -4.7941 44 1 0.7428 -3.3236 -8.4169 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000130650989.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:26 Heat of formation + Delta-G solvation = 55.070321 kcal Electronic energy + Delta-G solvation = -22128.212747 eV Core-core repulsion = 19081.108279 eV Total energy + Delta-G solvation = -3047.104468 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.32496 -38.65775 -34.31058 -33.23357 -32.40796 -32.03399 -30.01427 -28.88993 -27.39416 -26.35779 -26.00072 -23.00523 -21.30462 -20.96075 -20.06689 -19.63136 -18.94898 -17.09427 -16.29127 -15.62405 -15.13474 -15.06402 -14.40606 -14.32953 -14.01618 -13.48272 -13.29434 -13.15951 -12.67939 -12.57295 -12.41065 -12.26887 -12.12693 -11.94493 -11.78780 -11.43397 -11.35022 -11.10668 -10.98613 -10.76528 -10.55858 -10.46168 -10.40493 -10.22568 -9.54809 -9.26532 -9.06715 -8.98854 -8.29454 -8.24506 -8.06610 -5.94695 -3.96067 1.93864 2.86434 2.94843 3.34707 3.41973 3.46768 4.23598 4.51520 4.66480 4.81312 4.84662 4.95642 5.02615 5.10740 5.31028 5.35535 5.41424 5.53729 5.60675 5.66946 5.72083 5.80581 5.83012 5.90969 5.94776 5.97820 6.08632 6.12186 6.24247 6.25680 6.33735 6.42910 6.53418 6.76273 6.87731 6.93824 7.16325 7.31054 7.38142 7.47808 7.75550 7.87820 7.91182 8.06744 8.50553 9.11608 9.67687 11.16943 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.018399 B = 0.004285 C = 0.003983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.443413 B = 6532.167709 C = 7028.856832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.115 3.885 3 N -0.307 5.307 4 N -0.482 5.482 5 H 0.434 0.566 6 C 0.084 3.916 7 C -0.093 4.093 8 C -0.214 4.214 9 C 0.140 3.860 10 H 0.053 0.947 11 C -0.113 4.113 12 C -0.124 4.124 13 C 0.032 3.968 14 N -0.500 5.500 15 C 0.050 3.950 16 C -0.100 4.100 17 C 0.022 3.978 18 C -0.515 4.515 19 H 0.056 0.944 20 C 0.055 3.945 21 N -0.898 5.898 22 Si 0.890 3.110 23 H -0.272 1.272 24 H -0.285 1.285 25 H -0.285 1.285 26 H 0.064 0.936 27 H 0.062 0.938 28 H 0.114 0.886 29 H 0.081 0.919 30 H 0.068 0.932 31 H 0.083 0.917 32 H 0.070 0.930 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.069 0.931 36 H 0.042 0.958 37 H 0.083 0.917 38 H 0.066 0.934 39 H 0.029 0.971 40 H 0.045 0.955 41 H 0.054 0.946 42 H 0.013 0.987 43 H 0.012 0.988 44 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.293 1.259 20.049 21.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.052 4.052 3 N -0.131 5.131 4 N -0.190 5.190 5 H 0.277 0.723 6 C -0.045 4.045 7 C -0.151 4.151 8 C -0.226 4.226 9 C 0.031 3.969 10 H 0.071 0.929 11 C -0.152 4.152 12 C -0.162 4.162 13 C -0.096 4.096 14 N -0.223 5.223 15 C -0.078 4.078 16 C -0.138 4.138 17 C -0.016 4.016 18 C -0.553 4.553 19 H 0.074 0.926 20 C -0.146 4.146 21 N -0.537 5.537 22 Si 0.718 3.282 23 H -0.197 1.197 24 H -0.211 1.211 25 H -0.211 1.211 26 H 0.083 0.917 27 H 0.081 0.919 28 H 0.133 0.867 29 H 0.100 0.900 30 H 0.087 0.913 31 H 0.102 0.898 32 H 0.089 0.911 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.088 0.912 36 H 0.061 0.939 37 H 0.102 0.898 38 H 0.085 0.915 39 H 0.048 0.952 40 H 0.064 0.936 41 H 0.073 0.927 42 H 0.032 0.968 43 H 0.030 0.970 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 6.045 2.956 19.880 20.988 hybrid contribution 0.435 -1.129 -0.936 1.530 sum 6.480 1.827 18.944 20.105 Atomic orbital electron populations 1.20469 0.86402 1.05206 1.02244 1.22192 0.97180 0.89371 0.96438 1.77305 0.86282 1.22636 1.26847 1.46077 1.07411 1.04562 1.60948 0.72300 1.20806 0.96802 0.85124 1.01800 1.20455 0.92873 0.98274 1.03544 1.19424 0.90687 0.95647 1.16795 1.20727 0.92733 0.90770 0.92688 0.92948 1.22307 0.97219 0.99473 0.96182 1.22305 0.98720 0.99189 0.95981 1.23133 1.00629 0.91744 0.94047 1.65279 1.21189 1.33400 1.02464 1.22398 0.98926 0.99404 0.87059 1.21565 0.95424 1.00776 0.96046 1.19073 0.96547 0.96782 0.89193 1.21302 0.93914 1.48690 0.91397 0.92615 1.25028 0.95639 0.95469 0.98416 1.69981 1.20900 1.50311 1.12554 0.86561 0.83160 0.77523 0.80928 1.19685 1.21073 1.21102 0.91722 0.91934 0.86741 0.90050 0.91290 0.89787 0.91102 0.91949 0.91824 0.91172 0.93919 0.89816 0.91546 0.95237 0.93590 0.92696 0.96813 0.96957 0.93184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.16 10.22 36.00 0.37 -0.79 16 2 C 0.12 1.74 7.15 -82.40 -0.59 1.15 16 3 N -0.31 -4.77 12.70 33.67 0.43 -4.34 16 4 N -0.48 -5.97 7.36 33.48 0.25 -5.73 16 5 H 0.43 3.90 8.96 -182.61 -1.64 2.27 16 6 C 0.08 1.01 7.21 -82.26 -0.59 0.42 16 7 C -0.09 -0.77 10.01 36.00 0.36 -0.41 16 8 C -0.21 -2.95 4.60 -105.05 -0.48 -3.43 16 9 C 0.14 1.79 2.39 -67.22 -0.16 1.63 16 10 H 0.05 0.66 7.10 -51.93 -0.37 0.29 16 11 C -0.11 -1.20 6.54 -25.35 -0.17 -1.37 16 12 C -0.12 -1.27 6.99 -25.35 -0.18 -1.44 16 13 C 0.03 0.42 5.93 -2.09 -0.01 0.40 16 14 N -0.50 -7.29 2.62 -223.36 -0.59 -7.88 16 15 C 0.05 0.88 4.78 -3.82 -0.02 0.87 16 16 C -0.10 -2.12 5.27 -26.73 -0.14 -2.26 16 17 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 18 C -0.51 -14.89 9.11 -34.44 -0.31 -15.21 16 19 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 20 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 21 N -0.90 -27.51 13.29 55.43 0.74 -26.77 16 22 Si 0.89 22.06 29.54 -169.99 -5.02 17.04 16 23 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 24 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 25 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 26 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.11 1.68 5.83 -51.93 -0.30 1.38 16 29 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.08 0.63 7.47 -51.93 -0.39 0.24 16 32 H 0.07 0.78 7.84 -51.93 -0.41 0.38 16 33 H 0.06 0.57 8.14 -51.92 -0.42 0.15 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.04 0.56 7.75 -51.93 -0.40 0.16 16 37 H 0.08 1.11 7.86 -51.93 -0.41 0.70 16 38 H 0.07 1.27 7.78 -51.93 -0.40 0.86 16 39 H 0.03 0.52 7.77 -51.93 -0.40 0.12 16 40 H 0.05 0.95 7.47 -51.93 -0.39 0.56 16 41 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 42 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 44 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 350.75 15.07 5.29 5.29 Total: -1.00 -32.81 350.75 -9.95 -42.76 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -8.88 Total: -1.87 kcal Atomic # 6 Polarization: -16.34 SS G_CDS: -2.16 Total: -18.50 kcal Atomic # 7 Polarization: -45.55 SS G_CDS: 0.83 Total: -44.72 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.81 -9.95 -42.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130650989.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.832 kcal (2) G-P(sol) polarization free energy of solvation -32.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.762 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds