Wall clock time and date at job start Mon Mar 30 2020 02:34:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30843 * 125.90101 * 2 1 4 4 N 1.40092 * 108.20617 * 180.25411 * 3 2 1 5 5 H 0.96996 * 126.03643 * 179.69406 * 4 3 2 6 6 C 1.34949 * 107.92406 * 359.71662 * 4 3 2 7 7 C 1.50697 * 126.12661 * 180.02562 * 6 4 3 8 8 C 1.35320 * 107.74731 * 359.97438 * 6 4 3 9 9 C 1.50695 * 126.03963 * 180.02562 * 8 6 4 10 10 H 1.09001 * 110.45876 * 344.03684 * 9 8 6 11 11 C 1.54377 * 110.41311 * 106.45657 * 9 8 6 12 12 C 1.54257 * 105.06382 * 142.63362 * 11 9 8 13 13 C 1.54381 * 105.14978 * 359.94367 * 12 11 9 14 14 N 1.48567 * 110.41156 * 221.62662 * 9 8 6 15 15 C 1.46900 * 110.99718 * 82.17828 * 14 9 8 16 16 C 1.52999 * 109.46697 * 189.99889 * 15 14 9 17 17 C 1.53004 * 109.47231 * 180.02562 * 16 15 14 18 18 C 1.50698 * 109.47407 * 180.02562 * 17 16 15 19 19 H 1.07999 * 119.99714 * 359.97438 * 18 17 16 20 20 C 1.37884 * 119.99881 * 180.02562 * 18 17 16 21 21 N 1.31509 * 119.99673 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99664 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.47320 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.46927 * 120.00302 * 22 20 18 25 25 H 1.48504 * 109.46839 * 240.00112 * 22 20 18 26 26 H 1.08993 * 109.47253 * 270.21678 * 1 2 3 27 27 H 1.09001 * 109.46846 * 30.21730 * 1 2 3 28 28 H 1.09005 * 109.46851 * 150.21169 * 1 2 3 29 29 H 1.08993 * 109.46963 * 269.97845 * 7 6 4 30 30 H 1.09005 * 109.46520 * 29.97457 * 7 6 4 31 31 H 1.09000 * 109.47013 * 149.97472 * 7 6 4 32 32 H 1.08995 * 110.32829 * 23.72997 * 11 9 8 33 33 H 1.09013 * 110.40613 * 261.57126 * 11 9 8 34 34 H 1.09002 * 110.32715 * 118.89422 * 12 11 9 35 35 H 1.08998 * 110.32251 * 240.99949 * 12 11 9 36 36 H 1.09004 * 110.40867 * 94.98012 * 13 12 11 37 37 H 1.08996 * 110.41187 * 217.42234 * 13 12 11 38 38 H 1.08997 * 109.47620 * 310.00301 * 15 14 9 39 39 H 1.08999 * 109.47148 * 70.00734 * 15 14 9 40 40 H 1.09001 * 109.47808 * 300.00257 * 16 15 14 41 41 H 1.08997 * 109.47144 * 60.00574 * 16 15 14 42 42 H 1.09001 * 109.46812 * 300.00718 * 17 16 15 43 43 H 1.09002 * 109.47047 * 59.99836 * 17 16 15 44 44 H 0.97003 * 119.99377 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6088 0.6341 -0.0059 5 1 4.3909 1.2079 -0.0114 6 6 3.6143 -0.7154 -0.0031 7 6 4.8350 -1.5990 -0.0069 8 6 2.3271 -1.1330 0.0049 9 6 1.8599 -2.5657 0.0111 10 1 2.6738 -3.2331 -0.2725 11 6 1.3108 -2.9470 1.4026 12 6 0.1077 -3.8700 1.1197 13 6 0.0281 -3.9690 -0.4189 14 7 0.7048 -2.7380 -0.9072 15 6 1.1558 -2.9001 -2.2958 16 6 -0.0492 -2.8246 -3.2354 17 6 0.4203 -2.9941 -4.6817 18 6 -0.7665 -2.9190 -5.6073 19 1 -1.7567 -2.7662 -5.2043 20 6 -0.5882 -3.0466 -6.9686 21 7 0.6174 -3.2343 -7.4591 22 14 -2.0596 -2.9543 -8.1159 23 1 -3.2951 -2.7409 -7.3203 24 1 -1.8787 -1.8248 -9.0628 25 1 -2.1745 -4.2245 -8.8766 26 1 -0.3633 0.0039 1.0276 27 1 -0.3633 0.8880 -0.5172 28 1 -0.3633 -0.8919 -0.5106 29 1 5.1243 -1.8145 -1.0354 30 1 5.6536 -1.0897 0.5017 31 1 4.6100 -2.5317 0.5104 32 1 0.9862 -2.0554 1.9389 33 1 2.0690 -3.4789 1.9777 34 1 0.2759 -4.8553 1.5543 35 1 -0.8073 -3.4322 1.5186 36 1 0.5545 -4.8565 -0.7704 37 1 -1.0116 -3.9884 -0.7453 38 1 1.8605 -2.1065 -2.5440 39 1 1.6442 -3.8681 -2.4085 40 1 -0.7540 -3.6182 -2.9873 41 1 -0.5376 -1.8567 -3.1228 42 1 1.1253 -2.2007 -4.9302 43 1 0.9086 -3.9621 -4.7941 44 1 0.7428 -3.3236 -8.4169 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000130650989.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:26 Heat of formation + Delta-G solvation = 35.582084 kcal Electronic energy + Delta-G solvation = -22129.057820 eV Core-core repulsion = 19081.108279 eV Total energy + Delta-G solvation = -3047.949541 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.33142 -39.74597 -36.14644 -34.24929 -34.20040 -33.00244 -31.60672 -29.81309 -28.43136 -27.90373 -27.20811 -24.72974 -22.54804 -22.18761 -21.26292 -20.90020 -19.99664 -18.50698 -18.03516 -16.71198 -16.56584 -16.21160 -16.04802 -15.70536 -15.13197 -14.57202 -14.43261 -14.24342 -14.06167 -13.86457 -13.62447 -13.46014 -13.15880 -13.12908 -13.04775 -12.89040 -12.79167 -12.50956 -12.31776 -12.23942 -12.13385 -11.90432 -11.55045 -11.36728 -11.32447 -11.17007 -11.06030 -10.55168 -10.10683 -9.27324 -9.19952 -8.19654 -6.30294 0.95412 1.39790 1.40344 1.54081 1.79867 2.05026 2.41475 3.11859 3.13609 3.81498 3.82619 3.91470 3.98911 4.21617 4.27907 4.31566 4.37342 4.49313 4.60266 4.67108 4.70522 4.75957 4.79696 4.90183 4.91564 4.96612 5.05286 5.05965 5.10729 5.16036 5.18202 5.25349 5.28443 5.36839 5.44038 5.47387 5.54831 5.76529 5.85794 5.87749 6.14110 6.16759 6.30628 6.51993 6.84175 6.86816 7.38913 8.92688 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.018399 B = 0.004285 C = 0.003983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.443413 B = 6532.167709 C = 7028.856832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.097 3.903 3 N -0.343 5.343 4 N -0.476 5.476 5 H 0.447 0.553 6 C 0.091 3.909 7 C -0.091 4.091 8 C -0.238 4.238 9 C 0.141 3.859 10 H 0.057 0.943 11 C -0.106 4.106 12 C -0.114 4.114 13 C 0.027 3.973 14 N -0.505 5.505 15 C 0.068 3.932 16 C -0.083 4.083 17 C 0.027 3.973 18 C -0.539 4.539 19 H 0.059 0.941 20 C -0.001 4.001 21 N -0.935 5.935 22 Si 0.965 3.035 23 H -0.261 1.261 24 H -0.279 1.279 25 H -0.276 1.276 26 H 0.082 0.918 27 H 0.054 0.946 28 H 0.104 0.896 29 H 0.081 0.919 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.066 0.934 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.076 0.924 36 H 0.041 0.959 37 H 0.077 0.923 38 H 0.048 0.952 39 H 0.028 0.972 40 H 0.052 0.948 41 H 0.047 0.953 42 H -0.016 1.016 43 H -0.009 1.009 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.112 0.545 21.385 22.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.069 4.069 3 N -0.168 5.168 4 N -0.186 5.186 5 H 0.292 0.708 6 C -0.039 4.039 7 C -0.149 4.149 8 C -0.249 4.249 9 C 0.032 3.968 10 H 0.075 0.925 11 C -0.144 4.144 12 C -0.152 4.152 13 C -0.100 4.100 14 N -0.228 5.228 15 C -0.061 4.061 16 C -0.121 4.121 17 C -0.011 4.011 18 C -0.577 4.577 19 H 0.077 0.923 20 C -0.199 4.199 21 N -0.576 5.576 22 Si 0.789 3.211 23 H -0.185 1.185 24 H -0.205 1.205 25 H -0.202 1.202 26 H 0.100 0.900 27 H 0.073 0.927 28 H 0.122 0.878 29 H 0.100 0.900 30 H 0.113 0.887 31 H 0.114 0.886 32 H 0.085 0.915 33 H 0.102 0.898 34 H 0.103 0.897 35 H 0.095 0.905 36 H 0.059 0.941 37 H 0.095 0.905 38 H 0.067 0.933 39 H 0.047 0.953 40 H 0.070 0.930 41 H 0.065 0.935 42 H 0.002 0.998 43 H 0.009 0.991 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.866 2.252 21.239 22.149 hybrid contribution 0.567 -0.888 -1.349 1.712 sum 6.433 1.364 19.890 20.949 Atomic orbital electron populations 1.20419 0.86156 1.04197 1.03090 1.22447 0.97736 0.89974 0.96744 1.77215 0.87698 1.23511 1.28348 1.46121 1.07045 1.05150 1.60259 0.70760 1.21377 0.97692 0.85196 0.99667 1.20592 0.91984 0.98287 1.04082 1.19649 0.91322 0.95839 1.18129 1.20792 0.92166 0.90423 0.93386 0.92506 1.22276 0.97799 0.99579 0.94775 1.22271 0.98934 1.00342 0.93666 1.23214 0.99912 0.90758 0.96153 1.65206 1.22247 1.34501 1.00872 1.22012 0.96709 0.98613 0.88724 1.21292 0.96761 1.00413 0.93642 1.18963 0.95302 0.94358 0.92432 1.21719 0.94655 1.48929 0.92400 0.92255 1.25989 0.98843 0.94758 1.00291 1.70110 1.23292 1.50962 1.13216 0.85401 0.79393 0.77833 0.78457 1.18515 1.20484 1.20156 0.89962 0.92729 0.87786 0.90027 0.88671 0.88565 0.91529 0.89779 0.89735 0.90519 0.94086 0.90480 0.93322 0.95338 0.92964 0.93454 0.99781 0.99105 0.92827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.21 10.22 71.23 0.73 -1.48 16 2 C 0.10 2.93 7.15 43.10 0.31 3.24 16 3 N -0.34 -10.68 12.70 -47.38 -0.60 -11.28 16 4 N -0.48 -11.43 7.36 -48.00 -0.35 -11.78 16 5 H 0.45 7.59 8.96 -213.33 -1.91 5.67 16 6 C 0.09 2.07 7.21 41.40 0.30 2.37 16 7 C -0.09 -1.30 10.01 71.23 0.71 -0.59 16 8 C -0.24 -6.37 4.60 -20.14 -0.09 -6.46 16 9 C 0.14 3.42 2.39 44.31 0.11 3.52 16 10 H 0.06 1.33 7.10 -2.39 -0.02 1.31 16 11 C -0.11 -1.98 6.54 31.49 0.21 -1.77 16 12 C -0.11 -2.03 6.99 31.49 0.22 -1.81 16 13 C 0.03 0.66 5.93 86.42 0.51 1.18 16 14 N -0.50 -14.46 2.62 -860.59 -2.25 -16.72 16 15 C 0.07 2.45 4.78 86.30 0.41 2.86 16 16 C -0.08 -3.59 5.27 30.60 0.16 -3.43 16 17 C 0.03 1.49 4.97 29.85 0.15 1.64 16 18 C -0.54 -31.73 9.11 25.60 0.23 -31.49 16 19 H 0.06 3.37 7.74 -2.91 -0.02 3.34 16 20 C 0.00 -0.09 5.46 84.66 0.46 0.37 16 21 N -0.94 -58.30 13.29 21.45 0.28 -58.02 16 22 Si 0.96 45.32 29.54 68.60 2.03 47.35 16 23 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 24 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 25 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 26 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 27 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.10 3.08 5.83 -2.38 -0.01 3.06 16 29 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.09 0.87 8.14 -2.38 -0.02 0.85 16 31 H 0.10 1.17 7.47 -2.39 -0.02 1.15 16 32 H 0.07 1.32 7.84 -2.39 -0.02 1.30 16 33 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 34 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.04 1.01 7.75 -2.38 -0.02 1.00 16 37 H 0.08 1.96 7.86 -2.39 -0.02 1.94 16 38 H 0.05 1.91 7.78 -2.39 -0.02 1.89 16 39 H 0.03 1.02 7.77 -2.39 -0.02 1.00 16 40 H 0.05 2.17 7.47 -2.39 -0.02 2.15 16 41 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 42 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 43 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 44 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -71.81 350.75 2.58 -69.23 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: -0.94 Total: 13.08 kcal Atomic # 6 Polarization: -36.27 SS G_CDS: 4.42 Total: -31.86 kcal Atomic # 7 Polarization: -94.87 SS G_CDS: -2.92 Total: -97.80 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Total: -71.81 2.58 -69.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130650989.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.812 kcal (2) G-P(sol) polarization free energy of solvation -71.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.229 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds