Wall clock time and date at job start Mon Mar 30 2020 02:13:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46906 * 110.99856 * 2 1 4 4 C 1.53001 * 109.46649 * 293.95100 * 3 2 1 5 5 C 1.53002 * 109.46871 * 180.02562 * 4 3 2 6 6 C 1.50699 * 109.47272 * 179.97438 * 5 4 3 7 7 H 1.07999 * 119.99683 * 0.02562 * 6 5 4 8 8 C 1.37872 * 119.99996 * 179.97438 * 6 5 4 9 9 N 1.31521 * 120.00095 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 120.00066 * 180.02562 * 8 6 5 11 11 H 1.48505 * 109.47064 * 59.99902 * 10 8 6 12 12 H 1.48505 * 109.47249 * 180.02562 * 10 8 6 13 13 H 1.48507 * 109.46796 * 299.99942 * 10 8 6 14 14 C 1.46901 * 110.99771 * 123.95132 * 2 1 3 15 15 C 1.52995 * 109.47419 * 66.04808 * 14 2 1 16 16 O 1.42903 * 109.46972 * 64.99963 * 15 14 2 17 17 C 1.42893 * 113.99793 * 180.02562 * 16 15 14 18 18 C 1.50707 * 109.47070 * 179.97438 * 17 16 15 19 19 C 1.38238 * 119.99792 * 89.99993 * 18 17 16 20 20 C 1.38235 * 119.99712 * 179.97438 * 19 18 17 21 21 C 1.38234 * 120.00220 * 359.97124 * 20 19 18 22 22 C 1.38233 * 120.00037 * 0.28719 * 21 20 19 23 23 C 1.38234 * 120.00179 * 269.97930 * 18 17 16 24 24 H 1.08995 * 109.47630 * 296.05005 * 1 2 3 25 25 H 1.09003 * 109.46840 * 56.05330 * 1 2 3 26 26 H 1.09001 * 109.46904 * 176.04269 * 1 2 3 27 27 H 1.08994 * 109.47245 * 53.94629 * 3 2 1 28 28 H 1.08996 * 109.46715 * 173.95333 * 3 2 1 29 29 H 1.09004 * 109.46988 * 299.99630 * 4 3 2 30 30 H 1.08995 * 109.47410 * 59.99848 * 4 3 2 31 31 H 1.09004 * 109.46886 * 300.00082 * 5 4 3 32 32 H 1.09004 * 109.47236 * 59.99385 * 5 4 3 33 33 H 0.96998 * 119.99667 * 179.97438 * 9 8 6 34 34 H 1.09006 * 109.46861 * 306.04615 * 14 2 1 35 35 H 1.08996 * 109.47132 * 186.05183 * 14 2 1 36 36 H 1.09005 * 109.47112 * 305.00032 * 15 14 2 37 37 H 1.08993 * 109.47202 * 185.00135 * 15 14 2 38 38 H 1.09005 * 109.47744 * 60.00256 * 17 16 15 39 39 H 1.09000 * 109.47353 * 299.99456 * 17 16 15 40 40 H 1.08005 * 120.00068 * 359.97438 * 19 18 17 41 41 H 1.07999 * 119.99770 * 179.97438 * 20 19 18 42 42 H 1.08002 * 119.99744 * 180.02562 * 21 20 19 43 43 H 1.07998 * 120.00395 * 179.72811 * 22 21 20 44 44 H 1.07999 * 119.99968 * 359.97438 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6314 2.0574 -1.3183 5 6 2.1802 3.4856 -1.3187 6 6 1.8223 4.1610 -2.6174 7 1 1.2593 3.6253 -3.3673 8 6 2.2126 5.4631 -2.8477 9 7 2.8969 6.1159 -1.9337 10 14 1.7683 6.3006 -4.4572 11 1 0.2911 6.3375 -4.6048 12 1 2.3011 7.6868 -4.4576 13 1 2.3601 5.5431 -5.5892 14 6 1.9954 -0.7659 1.1376 15 6 1.6314 -2.2426 0.9705 16 8 2.2957 -2.7696 -0.1798 17 6 2.0215 -4.1499 -0.4277 18 6 2.7689 -4.5975 -1.6575 19 6 4.0471 -5.1109 -1.5407 20 6 4.7324 -5.5219 -2.6687 21 6 4.1394 -5.4202 -3.9132 22 6 2.8633 -4.9019 -4.0305 23 6 2.1761 -4.4951 -2.9021 24 1 -0.3634 0.4513 0.9232 25 1 -0.3633 0.5739 -0.8525 26 1 -0.3633 -1.0252 -0.0709 27 1 1.5610 1.9274 0.8308 28 1 3.0796 1.3444 0.1083 29 1 2.0659 1.5014 -2.1492 30 1 0.5472 2.0843 -1.4267 31 1 1.7462 4.0418 -0.4877 32 1 3.2645 3.4582 -1.2105 33 1 3.1719 7.0319 -2.0960 34 1 1.5610 -0.3871 2.0628 35 1 3.0796 -0.6610 1.1758 36 1 0.5531 -2.3389 0.8434 37 1 1.9438 -2.7962 1.8559 38 1 0.9513 -4.2854 -0.5841 39 1 2.3417 -4.7434 0.4286 40 1 4.5102 -5.1908 -0.5683 41 1 5.7312 -5.9226 -2.5775 42 1 4.6747 -5.7418 -4.7943 43 1 2.4016 -4.8184 -5.0032 44 1 1.1772 -4.0948 -2.9932 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000154577048.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:45 Heat of formation + Delta-G solvation = -28.858838 kcal Electronic energy + Delta-G solvation = -20648.688056 eV Core-core repulsion = 17565.651395 eV Total energy + Delta-G solvation = -3083.036660 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.49893 -38.25546 -36.82778 -33.69126 -32.28171 -31.34442 -31.02814 -29.11182 -27.06934 -26.05791 -25.08255 -22.71480 -22.55336 -21.44584 -20.72238 -19.78276 -17.10837 -16.64186 -16.49559 -16.11409 -15.55512 -15.31109 -14.96639 -14.47275 -14.40844 -14.13609 -13.54065 -13.50338 -13.42965 -12.85479 -12.50139 -12.37217 -12.17662 -11.91656 -11.68729 -11.40383 -11.21058 -11.15418 -11.07677 -10.83575 -10.73433 -10.47302 -10.41337 -9.62206 -9.52195 -9.24794 -9.03842 -9.00414 -8.95534 -8.27870 -7.93833 -5.93620 -3.95329 1.13951 1.28367 3.37988 3.41631 3.43429 3.44800 3.99949 4.21888 4.52509 4.66150 4.67963 4.86875 4.96642 5.06403 5.10717 5.16744 5.23152 5.30468 5.39773 5.41982 5.49562 5.52033 5.60307 5.68817 5.83046 5.85924 5.90563 5.93165 6.09201 6.20781 6.30780 6.37252 6.41706 6.46653 6.79977 6.85034 6.86419 7.14808 7.23329 7.47544 7.48585 7.75772 7.91903 8.07553 8.51316 9.11775 9.68201 11.17922 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.015516 B = 0.003155 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1804.147229 B = 8872.424130 C =10082.851952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.533 5.533 3 C 0.057 3.943 4 C -0.104 4.104 5 C 0.022 3.978 6 C -0.517 4.517 7 H 0.054 0.946 8 C 0.055 3.945 9 N -0.898 5.898 10 Si 0.892 3.108 11 H -0.277 1.277 12 H -0.288 1.288 13 H -0.277 1.277 14 C 0.055 3.945 15 C 0.067 3.933 16 O -0.360 6.360 17 C 0.101 3.899 18 C -0.087 4.087 19 C -0.100 4.100 20 C -0.126 4.126 21 C -0.117 4.117 22 C -0.123 4.123 23 C -0.095 4.095 24 H 0.019 0.981 25 H 0.075 0.925 26 H 0.059 0.941 27 H 0.026 0.974 28 H 0.069 0.931 29 H 0.056 0.944 30 H 0.046 0.954 31 H 0.013 0.987 32 H 0.015 0.985 33 H 0.260 0.740 34 H 0.045 0.955 35 H 0.081 0.919 36 H 0.049 0.951 37 H 0.047 0.953 38 H 0.054 0.946 39 H 0.052 0.948 40 H 0.121 0.879 41 H 0.122 0.878 42 H 0.121 0.879 43 H 0.123 0.877 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.315 -25.068 4.311 25.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.257 5.257 3 C -0.070 4.070 4 C -0.142 4.142 5 C -0.016 4.016 6 C -0.556 4.556 7 H 0.073 0.927 8 C -0.145 4.145 9 N -0.537 5.537 10 Si 0.720 3.280 11 H -0.203 1.203 12 H -0.213 1.213 13 H -0.202 1.202 14 C -0.074 4.074 15 C -0.010 4.010 16 O -0.278 6.278 17 C 0.024 3.976 18 C -0.087 4.087 19 C -0.118 4.118 20 C -0.144 4.144 21 C -0.135 4.135 22 C -0.141 4.141 23 C -0.113 4.113 24 H 0.038 0.962 25 H 0.094 0.906 26 H 0.078 0.922 27 H 0.045 0.955 28 H 0.087 0.913 29 H 0.074 0.926 30 H 0.065 0.935 31 H 0.031 0.969 32 H 0.034 0.966 33 H 0.070 0.930 34 H 0.063 0.937 35 H 0.100 0.900 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.072 0.928 39 H 0.070 0.930 40 H 0.139 0.861 41 H 0.140 0.860 42 H 0.139 0.861 43 H 0.141 0.859 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -0.953 -25.010 3.809 25.317 hybrid contribution -0.629 0.853 0.065 1.062 sum -1.582 -24.157 3.875 24.517 Atomic orbital electron populations 1.22451 0.88215 1.01174 1.00830 1.62011 1.07301 1.14935 1.41467 1.22301 0.99557 0.86128 0.99033 1.21644 0.99925 0.98083 0.94551 1.19070 0.96236 0.89384 0.96861 1.21232 1.34666 0.97579 1.02095 0.92739 1.25028 0.95286 0.97504 0.96716 1.69964 1.38465 1.11300 1.34003 0.86663 0.78720 0.78457 0.84184 1.20289 1.21342 1.20212 1.22125 1.01394 0.91621 0.92235 1.22576 0.96328 0.94320 0.87792 1.88144 1.70082 1.22953 1.46669 1.21265 0.97863 0.83967 0.94460 1.19605 0.95142 0.99584 0.94346 1.21043 0.93788 0.98153 0.98836 1.21128 0.99866 1.00687 0.92679 1.21191 0.95432 0.99337 0.97523 1.21169 0.95155 0.99208 0.98578 1.21093 1.00300 0.98024 0.91880 0.96239 0.90589 0.92232 0.95535 0.91288 0.92561 0.93527 0.96912 0.96629 0.93039 0.93722 0.90011 0.93296 0.93460 0.92808 0.92985 0.86102 0.86045 0.86112 0.85903 0.85866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.13 60.06 0.55 0.86 16 2 N -0.53 -8.61 4.71 -242.92 -1.14 -9.75 16 3 C 0.06 1.05 4.96 -3.82 -0.02 1.03 16 4 C -0.10 -2.29 5.08 -26.73 -0.14 -2.43 16 5 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 6 C -0.52 -15.19 9.11 -34.44 -0.31 -15.50 16 7 H 0.05 1.56 7.74 -52.49 -0.41 1.15 16 8 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 9 N -0.90 -27.67 13.29 55.43 0.74 -26.94 16 10 Si 0.89 22.22 29.54 -169.99 -5.02 17.20 16 11 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 13 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 14 C 0.05 0.72 5.34 -3.83 -0.02 0.70 16 15 C 0.07 0.75 5.99 37.16 0.22 0.98 16 16 O -0.36 -4.87 10.27 -35.23 -0.36 -5.23 16 17 C 0.10 1.06 6.06 36.01 0.22 1.28 16 18 C -0.09 -0.98 5.51 -104.62 -0.58 -1.56 16 19 C -0.10 -1.05 9.70 -39.58 -0.38 -1.43 16 20 C -0.13 -1.21 10.05 -39.58 -0.40 -1.61 16 21 C -0.12 -1.12 10.05 -39.58 -0.40 -1.52 16 22 C -0.12 -1.25 10.05 -39.58 -0.40 -1.65 16 23 C -0.09 -1.06 9.70 -39.58 -0.38 -1.44 16 24 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 25 H 0.08 1.17 6.30 -51.93 -0.33 0.85 16 26 H 0.06 0.74 6.37 -51.93 -0.33 0.41 16 27 H 0.03 0.49 8.12 -51.93 -0.42 0.06 16 28 H 0.07 1.29 7.93 -51.93 -0.41 0.88 16 29 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 30 H 0.05 1.00 6.47 -51.93 -0.34 0.66 16 31 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 34 H 0.04 0.53 8.12 -51.93 -0.42 0.11 16 35 H 0.08 1.11 7.93 -51.93 -0.41 0.70 16 36 H 0.05 0.51 6.34 -51.93 -0.33 0.18 16 37 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.05 0.50 8.08 -51.93 -0.42 0.08 16 39 H 0.05 0.45 8.09 -51.93 -0.42 0.03 16 40 H 0.12 1.06 8.06 -52.48 -0.42 0.64 16 41 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 42 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 43 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 44 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 LS Contribution 361.10 15.07 5.44 5.44 Total: -1.00 -32.77 361.10 -10.22 -43.00 By element: Atomic # 1 Polarization: 4.18 SS G_CDS: -7.60 Total: -3.42 kcal Atomic # 6 Polarization: -18.03 SS G_CDS: -2.27 Total: -20.30 kcal Atomic # 7 Polarization: -36.28 SS G_CDS: -0.41 Total: -36.69 kcal Atomic # 8 Polarization: -4.87 SS G_CDS: -0.36 Total: -5.23 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.77 -10.22 -43.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154577048.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.137 kcal (2) G-P(sol) polarization free energy of solvation -32.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds