Wall clock time and date at job start Mon Mar 30 2020 02:13:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46906 * 110.99856 * 2 1 4 4 C 1.53001 * 109.46649 * 293.95100 * 3 2 1 5 5 C 1.53002 * 109.46871 * 180.02562 * 4 3 2 6 6 C 1.50699 * 109.47272 * 179.97438 * 5 4 3 7 7 H 1.07999 * 119.99683 * 0.02562 * 6 5 4 8 8 C 1.37872 * 119.99996 * 179.97438 * 6 5 4 9 9 N 1.31521 * 120.00095 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 120.00066 * 180.02562 * 8 6 5 11 11 H 1.48505 * 109.47064 * 59.99902 * 10 8 6 12 12 H 1.48505 * 109.47249 * 180.02562 * 10 8 6 13 13 H 1.48507 * 109.46796 * 299.99942 * 10 8 6 14 14 C 1.46901 * 110.99771 * 123.95132 * 2 1 3 15 15 C 1.52995 * 109.47419 * 66.04808 * 14 2 1 16 16 O 1.42903 * 109.46972 * 64.99963 * 15 14 2 17 17 C 1.42893 * 113.99793 * 180.02562 * 16 15 14 18 18 C 1.50707 * 109.47070 * 179.97438 * 17 16 15 19 19 C 1.38238 * 119.99792 * 89.99993 * 18 17 16 20 20 C 1.38235 * 119.99712 * 179.97438 * 19 18 17 21 21 C 1.38234 * 120.00220 * 359.97124 * 20 19 18 22 22 C 1.38233 * 120.00037 * 0.28719 * 21 20 19 23 23 C 1.38234 * 120.00179 * 269.97930 * 18 17 16 24 24 H 1.08995 * 109.47630 * 296.05005 * 1 2 3 25 25 H 1.09003 * 109.46840 * 56.05330 * 1 2 3 26 26 H 1.09001 * 109.46904 * 176.04269 * 1 2 3 27 27 H 1.08994 * 109.47245 * 53.94629 * 3 2 1 28 28 H 1.08996 * 109.46715 * 173.95333 * 3 2 1 29 29 H 1.09004 * 109.46988 * 299.99630 * 4 3 2 30 30 H 1.08995 * 109.47410 * 59.99848 * 4 3 2 31 31 H 1.09004 * 109.46886 * 300.00082 * 5 4 3 32 32 H 1.09004 * 109.47236 * 59.99385 * 5 4 3 33 33 H 0.96998 * 119.99667 * 179.97438 * 9 8 6 34 34 H 1.09006 * 109.46861 * 306.04615 * 14 2 1 35 35 H 1.08996 * 109.47132 * 186.05183 * 14 2 1 36 36 H 1.09005 * 109.47112 * 305.00032 * 15 14 2 37 37 H 1.08993 * 109.47202 * 185.00135 * 15 14 2 38 38 H 1.09005 * 109.47744 * 60.00256 * 17 16 15 39 39 H 1.09000 * 109.47353 * 299.99456 * 17 16 15 40 40 H 1.08005 * 120.00068 * 359.97438 * 19 18 17 41 41 H 1.07999 * 119.99770 * 179.97438 * 20 19 18 42 42 H 1.08002 * 119.99744 * 180.02562 * 21 20 19 43 43 H 1.07998 * 120.00395 * 179.72811 * 22 21 20 44 44 H 1.07999 * 119.99968 * 359.97438 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6314 2.0574 -1.3183 5 6 2.1802 3.4856 -1.3187 6 6 1.8223 4.1610 -2.6174 7 1 1.2593 3.6253 -3.3673 8 6 2.2126 5.4631 -2.8477 9 7 2.8969 6.1159 -1.9337 10 14 1.7683 6.3006 -4.4572 11 1 0.2911 6.3375 -4.6048 12 1 2.3011 7.6868 -4.4576 13 1 2.3601 5.5431 -5.5892 14 6 1.9954 -0.7659 1.1376 15 6 1.6314 -2.2426 0.9705 16 8 2.2957 -2.7696 -0.1798 17 6 2.0215 -4.1499 -0.4277 18 6 2.7689 -4.5975 -1.6575 19 6 4.0471 -5.1109 -1.5407 20 6 4.7324 -5.5219 -2.6687 21 6 4.1394 -5.4202 -3.9132 22 6 2.8633 -4.9019 -4.0305 23 6 2.1761 -4.4951 -2.9021 24 1 -0.3634 0.4513 0.9232 25 1 -0.3633 0.5739 -0.8525 26 1 -0.3633 -1.0252 -0.0709 27 1 1.5610 1.9274 0.8308 28 1 3.0796 1.3444 0.1083 29 1 2.0659 1.5014 -2.1492 30 1 0.5472 2.0843 -1.4267 31 1 1.7462 4.0418 -0.4877 32 1 3.2645 3.4582 -1.2105 33 1 3.1719 7.0319 -2.0960 34 1 1.5610 -0.3871 2.0628 35 1 3.0796 -0.6610 1.1758 36 1 0.5531 -2.3389 0.8434 37 1 1.9438 -2.7962 1.8559 38 1 0.9513 -4.2854 -0.5841 39 1 2.3417 -4.7434 0.4286 40 1 4.5102 -5.1908 -0.5683 41 1 5.7312 -5.9226 -2.5775 42 1 4.6747 -5.7418 -4.7943 43 1 2.4016 -4.8184 -5.0032 44 1 1.1772 -4.0948 -2.9932 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000154577048.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:45 Heat of formation + Delta-G solvation = -48.137061 kcal Electronic energy + Delta-G solvation = -20649.524022 eV Core-core repulsion = 17565.651395 eV Total energy + Delta-G solvation = -3083.872627 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.26900 -39.31208 -37.95694 -35.68365 -33.62029 -32.74944 -31.76900 -30.32194 -28.64450 -27.07614 -26.46205 -24.24156 -23.46138 -22.24842 -21.98119 -21.47894 -18.49148 -17.88541 -17.48712 -17.34120 -16.57013 -16.40816 -16.34407 -16.13336 -15.46219 -15.20369 -14.94546 -14.57806 -14.25634 -14.21675 -13.72712 -13.65238 -13.26458 -13.24204 -13.18418 -12.74145 -12.66609 -12.55351 -12.47374 -12.17848 -11.97781 -11.86862 -11.73682 -11.41811 -11.34898 -11.05205 -10.54573 -10.46005 -9.80134 -9.73236 -9.17433 -8.20060 -6.31354 0.37288 0.52000 1.39352 1.43215 1.51108 2.41093 2.64894 3.00561 3.12621 3.21442 3.88420 3.94459 4.08002 4.16317 4.18647 4.26710 4.29663 4.34875 4.38093 4.45886 4.52281 4.57910 4.60447 4.67484 4.73278 4.73799 4.79296 4.89497 5.00275 5.06851 5.10617 5.10803 5.17276 5.26281 5.51758 5.56606 5.62624 5.69616 5.74438 5.85602 6.10589 6.12044 6.19213 6.28304 6.43489 6.84922 7.37674 8.91830 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.015516 B = 0.003155 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1804.147229 B = 8872.424130 C =10082.851952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.547 5.547 3 C 0.069 3.931 4 C -0.088 4.088 5 C 0.027 3.973 6 C -0.545 4.545 7 H 0.058 0.942 8 C -0.001 4.001 9 N -0.934 5.934 10 Si 0.966 3.034 11 H -0.265 1.265 12 H -0.281 1.281 13 H -0.268 1.268 14 C 0.052 3.948 15 C 0.069 3.931 16 O -0.392 6.392 17 C 0.101 3.899 18 C -0.106 4.106 19 C -0.113 4.113 20 C -0.133 4.133 21 C -0.124 4.124 22 C -0.135 4.135 23 C -0.115 4.115 24 H 0.029 0.971 25 H 0.059 0.941 26 H 0.081 0.919 27 H 0.028 0.972 28 H 0.062 0.938 29 H 0.044 0.956 30 H 0.051 0.949 31 H -0.008 1.008 32 H -0.010 1.010 33 H 0.264 0.736 34 H 0.062 0.938 35 H 0.072 0.928 36 H 0.059 0.941 37 H 0.074 0.926 38 H 0.063 0.937 39 H 0.071 0.929 40 H 0.134 0.866 41 H 0.143 0.857 42 H 0.143 0.857 43 H 0.138 0.862 44 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.857 -26.276 3.962 26.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.272 5.272 3 C -0.059 4.059 4 C -0.126 4.126 5 C -0.010 4.010 6 C -0.583 4.583 7 H 0.076 0.924 8 C -0.199 4.199 9 N -0.574 5.574 10 Si 0.790 3.210 11 H -0.190 1.190 12 H -0.206 1.206 13 H -0.193 1.193 14 C -0.076 4.076 15 C -0.007 4.007 16 O -0.312 6.312 17 C 0.025 3.975 18 C -0.106 4.106 19 C -0.131 4.131 20 C -0.150 4.150 21 C -0.142 4.142 22 C -0.153 4.153 23 C -0.133 4.133 24 H 0.048 0.952 25 H 0.078 0.922 26 H 0.100 0.900 27 H 0.046 0.954 28 H 0.080 0.920 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.010 0.990 32 H 0.008 0.992 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.091 0.909 36 H 0.077 0.923 37 H 0.093 0.907 38 H 0.081 0.919 39 H 0.089 0.911 40 H 0.151 0.849 41 H 0.161 0.839 42 H 0.160 0.840 43 H 0.155 0.845 44 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -1.505 -26.245 3.470 26.516 hybrid contribution -0.429 1.187 0.197 1.277 sum -1.935 -25.058 3.667 25.399 Atomic orbital electron populations 1.22465 0.87026 1.02417 1.00600 1.61937 1.08500 1.13154 1.43589 1.22002 0.99284 0.87767 0.96833 1.21384 0.99713 0.95230 0.96293 1.18960 0.94554 0.92107 0.95426 1.21664 1.35128 0.98420 1.03087 0.92410 1.26003 0.94886 0.98219 1.00755 1.70096 1.39282 1.11792 1.36244 0.85487 0.78982 0.77303 0.79196 1.19030 1.20597 1.19258 1.22227 1.00888 0.92651 0.91790 1.22623 0.96787 0.92998 0.88329 1.88094 1.70794 1.24594 1.47668 1.21376 0.98392 0.82866 0.94869 1.19862 0.95833 1.00148 0.94805 1.21314 0.93745 0.98194 0.99850 1.21475 1.00822 1.00232 0.92520 1.21532 0.95363 0.98862 0.98475 1.21457 0.95657 0.99146 0.99065 1.21294 1.00768 0.98801 0.92465 0.95216 0.92221 0.90032 0.95408 0.91965 0.93670 0.93036 0.98997 0.99196 0.92713 0.91955 0.90940 0.92299 0.90749 0.91915 0.91091 0.84853 0.83898 0.83955 0.84462 0.85726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.62 9.13 127.69 1.17 1.78 16 2 N -0.55 -17.18 4.71 -922.46 -4.35 -21.52 16 3 C 0.07 2.57 4.96 86.30 0.43 3.00 16 4 C -0.09 -3.96 5.08 30.60 0.16 -3.80 16 5 C 0.03 1.51 4.97 29.85 0.15 1.66 16 6 C -0.55 -32.49 9.11 25.60 0.23 -32.26 16 7 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 8 C 0.00 -0.06 5.46 84.65 0.46 0.40 16 9 N -0.93 -58.41 13.29 21.45 0.28 -58.12 16 10 Si 0.97 45.51 29.54 68.60 2.03 47.54 16 11 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 12 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 13 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 14 C 0.05 1.29 5.34 86.30 0.46 1.75 16 15 C 0.07 1.40 5.99 71.98 0.43 1.83 16 16 O -0.39 -10.07 10.27 -148.98 -1.53 -11.60 16 17 C 0.10 1.98 6.06 71.24 0.43 2.41 16 18 C -0.11 -2.34 5.51 -19.86 -0.11 -2.45 16 19 C -0.11 -2.25 9.70 22.27 0.22 -2.04 16 20 C -0.13 -2.38 10.05 22.27 0.22 -2.16 16 21 C -0.12 -2.23 10.05 22.27 0.22 -2.01 16 22 C -0.14 -2.67 10.05 22.27 0.22 -2.45 16 23 C -0.12 -2.54 9.70 22.27 0.22 -2.33 16 24 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 25 H 0.06 1.79 6.30 -2.39 -0.02 1.78 16 26 H 0.08 1.83 6.37 -2.39 -0.02 1.82 16 27 H 0.03 1.02 8.12 -2.39 -0.02 1.00 16 28 H 0.06 2.37 7.93 -2.39 -0.02 2.36 16 29 H 0.04 2.10 8.14 -2.38 -0.02 2.08 16 30 H 0.05 2.23 6.47 -2.39 -0.02 2.22 16 31 H -0.01 -0.49 8.14 -2.38 -0.02 -0.51 16 32 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 33 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 34 H 0.06 1.32 8.12 -2.38 -0.02 1.31 16 35 H 0.07 1.91 7.93 -2.39 -0.02 1.89 16 36 H 0.06 1.07 6.34 -2.38 -0.02 1.05 16 37 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.06 1.08 8.08 -2.38 -0.02 1.06 16 39 H 0.07 1.08 8.09 -2.39 -0.02 1.06 16 40 H 0.13 2.18 8.06 -2.91 -0.02 2.16 16 41 H 0.14 1.83 8.06 -2.91 -0.02 1.81 16 42 H 0.14 1.82 8.06 -2.91 -0.02 1.80 16 43 H 0.14 2.15 8.06 -2.91 -0.02 2.13 16 44 H 0.12 2.55 8.06 -2.91 -0.02 2.53 16 Total: -1.00 -70.77 361.10 2.28 -68.48 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: 0.94 Total: 11.89 kcal Atomic # 6 Polarization: -41.57 SS G_CDS: 4.91 Total: -36.66 kcal Atomic # 7 Polarization: -75.59 SS G_CDS: -4.06 Total: -79.65 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: -1.53 Total: -11.60 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Total: -70.77 2.28 -68.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154577048.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.345 kcal (2) G-P(sol) polarization free energy of solvation -70.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds