Wall clock time and date at job start Mon Mar 30 2020 02:11:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42903 * 109.46726 * 2 1 4 4 C 1.35904 * 116.99628 * 180.02562 * 3 2 1 5 5 C 1.38814 * 120.01726 * 359.73024 * 4 3 2 6 6 C 1.38180 * 120.08689 * 179.71715 * 5 4 3 7 7 C 1.38150 * 120.12815 * 0.55613 * 6 5 4 8 8 C 1.38932 * 120.03989 * 359.72113 * 7 6 5 9 9 N 1.39661 * 120.04684 * 180.02562 * 8 7 6 10 10 C 1.46498 * 120.00190 * 359.97335 * 9 8 7 11 11 C 1.53010 * 109.47012 * 180.02562 * 10 9 8 12 12 C 1.52996 * 109.47178 * 299.99982 * 11 10 9 13 13 C 1.52995 * 109.46882 * 60.00231 * 11 10 9 14 14 C 1.53000 * 109.46943 * 180.02562 * 11 10 9 15 15 C 1.50698 * 109.46877 * 180.02562 * 14 11 10 16 16 H 1.07998 * 120.00137 * 359.97438 * 15 14 11 17 17 C 1.37878 * 119.99619 * 179.97438 * 15 14 11 18 18 N 1.31516 * 120.00244 * 359.97438 * 17 15 14 19 19 Si 1.86807 * 119.99924 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47295 * 59.99400 * 19 17 15 21 21 H 1.48498 * 109.47469 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.46551 * 299.99795 * 19 17 15 23 23 C 1.38573 * 120.01719 * 180.02562 * 4 3 2 24 24 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47194 * 299.99575 * 1 2 3 26 26 H 1.08992 * 109.47399 * 59.99748 * 1 2 3 27 27 H 1.09002 * 109.47398 * 120.00244 * 2 1 3 28 28 H 1.09001 * 109.47194 * 240.00425 * 2 1 3 29 29 H 1.07996 * 119.95703 * 359.97438 * 5 4 3 30 30 H 1.08000 * 119.92938 * 180.27062 * 6 5 4 31 31 H 1.08005 * 119.97695 * 179.74294 * 7 6 5 32 32 H 0.97008 * 119.99785 * 179.97438 * 9 8 7 33 33 H 1.09001 * 109.47014 * 299.99841 * 10 9 8 34 34 H 1.08997 * 109.47011 * 60.00475 * 10 9 8 35 35 H 1.09007 * 109.47068 * 60.00031 * 12 11 10 36 36 H 1.08998 * 109.47525 * 180.02562 * 12 11 10 37 37 H 1.09007 * 109.47198 * 300.00117 * 12 11 10 38 38 H 1.09001 * 109.47788 * 59.99977 * 13 11 10 39 39 H 1.09011 * 109.46835 * 180.02562 * 13 11 10 40 40 H 1.08999 * 109.47218 * 299.99571 * 13 11 10 41 41 H 1.09001 * 109.47041 * 299.99977 * 14 11 10 42 42 H 1.08994 * 109.47486 * 59.99675 * 14 11 10 43 43 H 0.96998 * 119.99713 * 180.02562 * 18 17 15 44 44 H 1.08004 * 120.06059 * 359.97438 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3536 1.5254 -0.0005 5 6 4.1995 0.4248 0.0046 6 6 5.5696 0.6042 -0.0018 7 6 6.1021 1.8789 -0.0018 8 6 5.2604 2.9843 -0.0012 9 7 5.7985 4.2730 -0.0017 10 6 7.2515 4.4601 -0.0023 11 6 7.5731 5.9561 -0.0022 12 6 6.9745 6.6065 -1.2510 13 6 6.9757 6.6059 1.2475 14 6 9.0905 6.1515 -0.0035 15 6 9.4072 7.6248 -0.0027 16 1 8.6063 8.3493 -0.0018 17 6 10.7195 8.0478 -0.0031 18 7 11.6948 7.1655 -0.0037 19 14 11.1122 9.8741 -0.0014 20 1 10.5325 10.5039 1.2121 21 1 12.5850 10.0638 -0.0028 22 1 10.5310 10.5064 -1.2129 23 6 3.8836 2.8058 0.0000 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8934 -0.5139 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 3.7863 -0.5729 0.0094 30 1 6.2254 -0.2539 -0.0022 31 1 7.1734 2.0163 -0.0027 32 1 5.2101 5.0443 -0.0016 33 1 7.6778 3.9971 0.8876 34 1 7.6771 3.9968 -0.8924 35 1 5.8934 6.4673 -1.2505 36 1 7.2040 7.6721 -1.2511 37 1 7.4001 6.1435 -2.1413 38 1 7.4021 6.1425 2.1372 39 1 7.2044 7.6717 1.2474 40 1 5.8947 6.4667 1.2480 41 1 9.5173 5.6880 0.8860 42 1 9.5157 5.6885 -0.8939 43 1 12.6180 7.4632 -0.0036 44 1 3.2268 3.6632 0.0004 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000155979305.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:54 Heat of formation + Delta-G solvation = -35.668999 kcal Electronic energy + Delta-G solvation = -21095.228928 eV Core-core repulsion = 18011.896957 eV Total energy + Delta-G solvation = -3083.331971 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.09021 -38.43957 -36.95048 -34.00745 -32.25275 -32.11648 -29.87499 -28.62493 -26.96391 -26.49051 -25.84650 -23.83350 -22.89389 -22.26954 -20.79592 -18.31783 -18.06766 -16.42118 -16.21072 -16.06235 -15.77704 -15.57334 -14.61036 -14.37680 -14.24135 -13.57083 -13.47445 -13.22878 -12.99875 -12.80272 -12.72620 -12.72260 -12.06223 -12.02816 -11.93448 -11.39236 -11.24954 -11.01234 -10.87321 -10.85657 -10.82100 -10.62617 -10.35992 -10.26051 -9.96027 -9.63834 -9.20996 -8.94985 -8.37099 -8.21397 -7.19849 -6.01608 -4.02593 1.61020 1.76496 3.06340 3.31435 3.36610 3.38277 3.85092 4.01853 4.44433 4.68852 4.73658 4.97256 5.01637 5.20293 5.26138 5.34030 5.44308 5.47178 5.52339 5.53019 5.60490 5.69509 5.75786 5.79016 6.00158 6.18040 6.18899 6.27170 6.39420 6.42250 6.45502 6.64346 6.64840 6.67718 6.74397 7.04746 7.07595 7.10882 7.45981 7.60931 7.61182 7.73934 7.97044 7.99904 8.39674 9.01781 9.60551 11.09835 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.045746 B = 0.002870 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.925910 B = 9753.618859 C =10158.578007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.320 6.320 4 C 0.171 3.829 5 C -0.277 4.277 6 C -0.034 4.034 7 C -0.233 4.233 8 C 0.261 3.739 9 N -0.733 5.733 10 C 0.131 3.869 11 C -0.071 4.071 12 C -0.127 4.127 13 C -0.126 4.126 14 C 0.036 3.964 15 C -0.511 4.511 16 H 0.059 0.941 17 C 0.056 3.944 18 N -0.895 5.895 19 Si 0.889 3.111 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.278 1.278 23 C -0.240 4.240 24 H 0.076 0.924 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.118 0.882 30 H 0.120 0.880 31 H 0.124 0.876 32 H 0.399 0.601 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.030 0.970 36 H 0.066 0.934 37 H 0.046 0.954 38 H 0.047 0.953 39 H 0.065 0.935 40 H 0.029 0.971 41 H 0.018 0.982 42 H 0.018 0.982 43 H 0.260 0.740 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.584 -13.429 0.006 22.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.019 4.019 3 O -0.234 6.234 4 C 0.125 3.875 5 C -0.298 4.298 6 C -0.053 4.053 7 C -0.256 4.256 8 C 0.154 3.846 9 N -0.360 5.360 10 C 0.008 3.992 11 C -0.071 4.071 12 C -0.184 4.184 13 C -0.184 4.184 14 C -0.001 4.001 15 C -0.549 4.549 16 H 0.077 0.923 17 C -0.145 4.145 18 N -0.535 5.535 19 Si 0.717 3.283 20 H -0.203 1.203 21 H -0.214 1.214 22 H -0.203 1.203 23 C -0.263 4.263 24 H 0.095 0.905 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.136 0.864 30 H 0.138 0.862 31 H 0.142 0.858 32 H 0.235 0.765 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.049 0.951 36 H 0.084 0.916 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.084 0.916 40 H 0.049 0.951 41 H 0.036 0.964 42 H 0.036 0.964 43 H 0.070 0.930 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -17.312 -13.263 0.007 21.808 hybrid contribution 0.279 1.015 -0.001 1.052 sum -17.032 -12.249 0.006 20.979 Atomic orbital electron populations 1.21778 0.93063 1.02641 1.03451 1.22716 0.95479 0.82306 1.01376 1.86028 1.19691 1.28977 1.88689 1.18548 0.81560 0.93549 0.93817 1.20852 0.94281 0.97287 1.17384 1.20621 0.94051 0.96445 0.94227 1.20632 0.99601 0.91405 1.13926 1.17540 0.90925 0.85949 0.90186 1.45073 1.07397 1.03789 1.79756 1.21629 0.78780 0.98177 1.00622 1.20863 1.00413 0.90729 0.95097 1.21750 0.97321 1.02100 0.97216 1.21748 0.97327 1.02096 0.97209 1.19089 0.86490 0.97186 0.97344 1.21145 0.91582 0.91900 1.50306 0.92339 1.25011 0.96622 0.97329 0.95535 1.69948 0.99316 1.33353 1.50865 0.86705 0.77147 0.85873 0.78550 1.20317 1.21390 1.20323 1.19620 0.93134 0.95219 1.18373 0.90550 0.91603 0.91597 0.92140 0.92141 0.86427 0.86238 0.85824 0.76501 0.92466 0.92461 0.95147 0.91552 0.93440 0.93434 0.91556 0.95150 0.96412 0.96411 0.92992 0.85878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 10.28 37.16 0.38 -0.62 16 2 C 0.06 0.49 5.46 37.16 0.20 0.69 16 3 O -0.32 -4.00 10.13 -19.44 -0.20 -4.20 16 4 C 0.17 2.33 6.68 -39.25 -0.26 2.06 16 5 C -0.28 -3.43 9.04 -39.39 -0.36 -3.78 16 6 C -0.03 -0.43 10.03 -39.63 -0.40 -0.83 16 7 C -0.23 -3.32 9.31 -39.36 -0.37 -3.69 16 8 C 0.26 3.87 6.65 -83.82 -0.56 3.31 16 9 N -0.73 -10.92 5.13 -58.65 -0.30 -11.23 16 10 C 0.13 2.20 3.80 -4.04 -0.02 2.18 16 11 C -0.07 -1.33 0.54 -154.51 -0.08 -1.42 16 12 C -0.13 -2.27 8.05 37.16 0.30 -1.98 16 13 C -0.13 -2.27 8.05 37.16 0.30 -1.97 16 14 C 0.04 0.88 4.04 -27.88 -0.11 0.77 16 15 C -0.51 -13.53 7.65 -34.44 -0.26 -13.80 16 16 H 0.06 1.50 5.68 -52.49 -0.30 1.20 16 17 C 0.06 1.55 5.46 -17.82 -0.10 1.46 16 18 N -0.90 -26.22 13.29 55.43 0.74 -25.48 16 19 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 C -0.24 -3.43 9.83 -39.24 -0.39 -3.81 16 24 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.48 7.65 -51.93 -0.40 0.08 16 28 H 0.06 0.48 7.67 -51.93 -0.40 0.08 16 29 H 0.12 1.18 6.29 -52.49 -0.33 0.85 16 30 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 31 H 0.12 1.75 6.73 -52.48 -0.35 1.39 16 32 H 0.40 5.61 6.17 -40.82 -0.25 5.36 16 33 H 0.06 0.98 7.95 -51.93 -0.41 0.56 16 34 H 0.06 0.98 7.95 -51.93 -0.41 0.57 16 35 H 0.03 0.46 6.86 -51.92 -0.36 0.11 16 36 H 0.07 1.28 6.62 -51.93 -0.34 0.94 16 37 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 39 H 0.07 1.28 6.62 -51.92 -0.34 0.94 16 40 H 0.03 0.46 6.86 -51.93 -0.36 0.11 16 41 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.26 7.27 8.31 -40.82 -0.34 6.94 16 44 H 0.12 1.65 8.06 -52.48 -0.42 1.23 16 LS Contribution 348.74 15.07 5.26 5.26 Total: -1.00 -29.11 348.74 -8.44 -37.54 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -7.19 Total: 3.34 kcal Atomic # 6 Polarization: -19.70 SS G_CDS: -1.71 Total: -21.42 kcal Atomic # 7 Polarization: -37.14 SS G_CDS: 0.44 Total: -36.71 kcal Atomic # 8 Polarization: -4.00 SS G_CDS: -0.20 Total: -4.20 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -29.11 -8.44 -37.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155979305.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.875 kcal (2) G-P(sol) polarization free energy of solvation -29.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds