Wall clock time and date at job start Mon Mar 30 2020 02:11:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42903 * 109.46726 * 2 1 4 4 C 1.35904 * 116.99628 * 180.02562 * 3 2 1 5 5 C 1.38814 * 120.01726 * 359.73024 * 4 3 2 6 6 C 1.38180 * 120.08689 * 179.71715 * 5 4 3 7 7 C 1.38150 * 120.12815 * 0.55613 * 6 5 4 8 8 C 1.38932 * 120.03989 * 359.72113 * 7 6 5 9 9 N 1.39661 * 120.04684 * 180.02562 * 8 7 6 10 10 C 1.46498 * 120.00190 * 359.97335 * 9 8 7 11 11 C 1.53010 * 109.47012 * 180.02562 * 10 9 8 12 12 C 1.52996 * 109.47178 * 299.99982 * 11 10 9 13 13 C 1.52995 * 109.46882 * 60.00231 * 11 10 9 14 14 C 1.53000 * 109.46943 * 180.02562 * 11 10 9 15 15 C 1.50698 * 109.46877 * 180.02562 * 14 11 10 16 16 H 1.07998 * 120.00137 * 359.97438 * 15 14 11 17 17 C 1.37878 * 119.99619 * 179.97438 * 15 14 11 18 18 N 1.31516 * 120.00244 * 359.97438 * 17 15 14 19 19 Si 1.86807 * 119.99924 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47295 * 59.99400 * 19 17 15 21 21 H 1.48498 * 109.47469 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.46551 * 299.99795 * 19 17 15 23 23 C 1.38573 * 120.01719 * 180.02562 * 4 3 2 24 24 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47194 * 299.99575 * 1 2 3 26 26 H 1.08992 * 109.47399 * 59.99748 * 1 2 3 27 27 H 1.09002 * 109.47398 * 120.00244 * 2 1 3 28 28 H 1.09001 * 109.47194 * 240.00425 * 2 1 3 29 29 H 1.07996 * 119.95703 * 359.97438 * 5 4 3 30 30 H 1.08000 * 119.92938 * 180.27062 * 6 5 4 31 31 H 1.08005 * 119.97695 * 179.74294 * 7 6 5 32 32 H 0.97008 * 119.99785 * 179.97438 * 9 8 7 33 33 H 1.09001 * 109.47014 * 299.99841 * 10 9 8 34 34 H 1.08997 * 109.47011 * 60.00475 * 10 9 8 35 35 H 1.09007 * 109.47068 * 60.00031 * 12 11 10 36 36 H 1.08998 * 109.47525 * 180.02562 * 12 11 10 37 37 H 1.09007 * 109.47198 * 300.00117 * 12 11 10 38 38 H 1.09001 * 109.47788 * 59.99977 * 13 11 10 39 39 H 1.09011 * 109.46835 * 180.02562 * 13 11 10 40 40 H 1.08999 * 109.47218 * 299.99571 * 13 11 10 41 41 H 1.09001 * 109.47041 * 299.99977 * 14 11 10 42 42 H 1.08994 * 109.47486 * 59.99675 * 14 11 10 43 43 H 0.96998 * 119.99713 * 180.02562 * 18 17 15 44 44 H 1.08004 * 120.06059 * 359.97438 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3536 1.5254 -0.0005 5 6 4.1995 0.4248 0.0046 6 6 5.5696 0.6042 -0.0018 7 6 6.1021 1.8789 -0.0018 8 6 5.2604 2.9843 -0.0012 9 7 5.7985 4.2730 -0.0017 10 6 7.2515 4.4601 -0.0023 11 6 7.5731 5.9561 -0.0022 12 6 6.9745 6.6065 -1.2510 13 6 6.9757 6.6059 1.2475 14 6 9.0905 6.1515 -0.0035 15 6 9.4072 7.6248 -0.0027 16 1 8.6063 8.3493 -0.0018 17 6 10.7195 8.0478 -0.0031 18 7 11.6948 7.1655 -0.0037 19 14 11.1122 9.8741 -0.0014 20 1 10.5325 10.5039 1.2121 21 1 12.5850 10.0638 -0.0028 22 1 10.5310 10.5064 -1.2129 23 6 3.8836 2.8058 0.0000 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8934 -0.5139 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 3.7863 -0.5729 0.0094 30 1 6.2254 -0.2539 -0.0022 31 1 7.1734 2.0163 -0.0027 32 1 5.2101 5.0443 -0.0016 33 1 7.6778 3.9971 0.8876 34 1 7.6771 3.9968 -0.8924 35 1 5.8934 6.4673 -1.2505 36 1 7.2040 7.6721 -1.2511 37 1 7.4001 6.1435 -2.1413 38 1 7.4021 6.1425 2.1372 39 1 7.2044 7.6717 1.2474 40 1 5.8947 6.4667 1.2480 41 1 9.5173 5.6880 0.8860 42 1 9.5157 5.6885 -0.8939 43 1 12.6180 7.4632 -0.0036 44 1 3.2268 3.6632 0.0004 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000155979305.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:53 Heat of formation + Delta-G solvation = -50.885725 kcal Electronic energy + Delta-G solvation = -21095.888775 eV Core-core repulsion = 18011.896957 eV Total energy + Delta-G solvation = -3083.991818 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.07157 -39.65384 -38.22095 -35.42304 -34.11526 -32.82908 -30.90896 -29.82732 -28.75989 -27.97689 -27.21676 -24.99965 -24.27734 -23.37033 -21.81187 -19.74990 -19.18162 -18.36087 -17.18822 -16.97329 -16.96812 -16.66080 -16.39291 -15.77931 -15.46942 -14.82498 -14.50525 -14.46466 -14.36427 -13.99969 -13.99203 -13.94206 -13.33319 -13.13860 -12.85474 -12.79431 -12.71940 -12.55642 -12.42565 -12.33367 -12.17483 -11.96155 -11.70886 -11.69226 -11.49257 -10.98557 -10.85010 -10.80924 -10.50157 -9.23026 -8.32374 -8.14157 -6.21120 0.57856 0.72079 1.41982 1.43490 1.50763 2.16372 2.43720 2.73951 2.97550 3.20138 3.96274 4.00256 4.10704 4.11191 4.17961 4.22155 4.29277 4.38960 4.44210 4.47378 4.67008 4.68417 4.75539 4.75731 4.84393 4.96721 4.98136 5.06581 5.10846 5.12973 5.23754 5.39174 5.43009 5.46055 5.48742 5.51089 5.55528 5.65810 5.73358 5.80714 5.90047 6.29367 6.41935 6.57906 6.87126 6.93503 7.46093 8.97836 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.045746 B = 0.002870 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.925910 B = 9753.618859 C =10158.578007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.046 3.954 3 O -0.335 6.335 4 C 0.164 3.836 5 C -0.273 4.273 6 C -0.034 4.034 7 C -0.251 4.251 8 C 0.248 3.752 9 N -0.731 5.731 10 C 0.148 3.852 11 C -0.064 4.064 12 C -0.121 4.121 13 C -0.121 4.121 14 C 0.041 3.959 15 C -0.515 4.515 16 H 0.067 0.933 17 C -0.003 4.003 18 N -0.936 5.936 19 Si 0.955 3.045 20 H -0.269 1.269 21 H -0.289 1.289 22 H -0.269 1.269 23 C -0.251 4.251 24 H 0.101 0.899 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.144 0.856 30 H 0.145 0.855 31 H 0.118 0.882 32 H 0.404 0.596 33 H 0.050 0.950 34 H 0.050 0.950 35 H 0.061 0.939 36 H 0.051 0.949 37 H 0.039 0.961 38 H 0.039 0.961 39 H 0.051 0.949 40 H 0.061 0.939 41 H -0.010 1.010 42 H -0.010 1.010 43 H 0.260 0.740 44 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.727 -13.997 0.010 24.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.029 4.029 3 O -0.249 6.249 4 C 0.117 3.883 5 C -0.293 4.293 6 C -0.053 4.053 7 C -0.274 4.274 8 C 0.142 3.858 9 N -0.360 5.360 10 C 0.023 3.977 11 C -0.064 4.064 12 C -0.178 4.178 13 C -0.178 4.178 14 C 0.004 3.996 15 C -0.554 4.554 16 H 0.085 0.915 17 C -0.200 4.200 18 N -0.577 5.577 19 Si 0.781 3.219 20 H -0.194 1.194 21 H -0.215 1.215 22 H -0.194 1.194 23 C -0.275 4.275 24 H 0.119 0.881 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.161 0.839 30 H 0.163 0.837 31 H 0.136 0.864 32 H 0.241 0.759 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.080 0.920 36 H 0.070 0.930 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.070 0.930 40 H 0.080 0.920 41 H 0.008 0.992 42 H 0.008 0.992 43 H 0.069 0.931 44 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -19.495 -13.841 0.010 23.909 hybrid contribution 0.857 1.051 -0.002 1.356 sum -18.638 -12.791 0.008 22.605 Atomic orbital electron populations 1.21811 0.91582 1.04156 1.03071 1.23050 0.96719 0.80779 1.02311 1.86024 1.19004 1.31410 1.88453 1.18716 0.82401 0.93649 0.93503 1.21166 0.94043 0.98239 1.15895 1.20936 0.94710 0.96566 0.93097 1.20777 0.99449 0.92282 1.14908 1.17642 0.91342 0.85775 0.91075 1.44811 1.06201 1.04296 1.80661 1.21248 0.80183 0.96244 0.99997 1.20669 0.96742 0.92618 0.96387 1.21672 0.99194 1.00773 0.96147 1.21670 0.99200 1.00771 0.96140 1.18957 0.90246 0.95792 0.94609 1.21552 0.91803 0.93129 1.48870 0.91467 1.25899 0.96747 1.01861 0.95517 1.70093 0.99600 1.35490 1.52484 0.85643 0.76742 0.80488 0.79029 1.19355 1.21498 1.19365 1.19738 0.92953 0.96029 1.18739 0.88076 0.91985 0.91980 0.91142 0.91149 0.83869 0.83738 0.86421 0.75942 0.93212 0.93204 0.92010 0.92971 0.94232 0.94225 0.92972 0.92014 0.99182 0.99176 0.93137 0.85502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 10.28 71.98 0.74 -0.87 16 2 C 0.05 0.68 5.46 71.98 0.39 1.08 16 3 O -0.33 -7.77 10.13 -92.47 -0.94 -8.71 16 4 C 0.16 4.17 6.68 22.49 0.15 4.32 16 5 C -0.27 -6.09 9.04 22.39 0.20 -5.89 16 6 C -0.03 -0.80 10.03 22.24 0.22 -0.58 16 7 C -0.25 -7.00 9.31 22.42 0.21 -6.80 16 8 C 0.25 7.14 6.65 38.20 0.25 7.39 16 9 N -0.73 -21.16 5.13 -339.47 -1.74 -22.90 16 10 C 0.15 4.97 3.80 86.38 0.33 5.30 16 11 C -0.06 -2.42 0.54 -52.18 -0.03 -2.44 16 12 C -0.12 -4.24 8.05 71.98 0.58 -3.67 16 13 C -0.12 -4.24 8.05 71.98 0.58 -3.66 16 14 C 0.04 2.08 4.04 29.85 0.12 2.20 16 15 C -0.52 -27.70 7.65 25.60 0.20 -27.50 16 16 H 0.07 3.43 5.68 -2.91 -0.02 3.42 16 17 C 0.00 -0.18 5.46 84.65 0.46 0.28 16 18 N -0.94 -56.29 13.29 21.45 0.28 -56.00 16 19 Si 0.96 43.74 29.54 68.60 2.03 45.77 16 20 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 21 H -0.29 -13.19 7.11 99.48 0.71 -12.49 16 22 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 23 C -0.25 -6.89 9.83 22.49 0.22 -6.67 16 24 H 0.10 0.59 8.14 -2.39 -0.02 0.58 16 25 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.07 0.91 7.65 -2.39 -0.02 0.89 16 28 H 0.07 0.91 7.67 -2.39 -0.02 0.89 16 29 H 0.14 2.39 6.29 -2.91 -0.02 2.37 16 30 H 0.14 2.56 8.06 -2.91 -0.02 2.53 16 31 H 0.12 3.35 6.73 -2.91 -0.02 3.33 16 32 H 0.40 10.66 6.17 -92.70 -0.57 10.09 16 33 H 0.05 1.74 7.95 -2.39 -0.02 1.72 16 34 H 0.05 1.74 7.95 -2.39 -0.02 1.72 16 35 H 0.06 1.78 6.86 -2.38 -0.02 1.76 16 36 H 0.05 1.97 6.62 -2.39 -0.02 1.96 16 37 H 0.04 1.43 8.14 -2.38 -0.02 1.41 16 38 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.05 1.97 6.62 -2.38 -0.02 1.96 16 40 H 0.06 1.78 6.86 -2.39 -0.02 1.76 16 41 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 42 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 43 H 0.26 14.89 8.31 -92.71 -0.77 14.11 16 44 H 0.13 3.27 8.06 -2.91 -0.02 3.25 16 Total: -1.00 -63.34 348.74 4.66 -58.68 By element: Atomic # 1 Polarization: 20.27 SS G_CDS: 0.40 Total: 20.67 kcal Atomic # 6 Polarization: -42.14 SS G_CDS: 4.63 Total: -37.51 kcal Atomic # 7 Polarization: -77.44 SS G_CDS: -1.46 Total: -78.90 kcal Atomic # 8 Polarization: -7.77 SS G_CDS: -0.94 Total: -8.71 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Total: -63.34 4.66 -58.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155979305.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.793 kcal (2) G-P(sol) polarization free energy of solvation -63.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds