Wall clock time and date at job start Mon Mar 30 2020 02:39:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30502 * 125.64942 * 2 1 4 4 C 1.34125 * 109.25441 * 180.28581 * 3 2 1 5 5 C 1.34672 * 108.02183 * 359.72670 * 4 3 2 6 6 N 1.35043 * 125.65059 * 179.81269 * 2 1 3 7 7 C 1.46504 * 126.39628 * 359.97438 * 6 2 1 8 8 C 1.52997 * 109.47005 * 84.71026 * 7 6 2 9 9 C 1.53004 * 109.46989 * 180.02562 * 8 7 6 10 10 N 1.46498 * 109.47209 * 179.97438 * 9 8 7 11 11 C 1.36939 * 120.00232 * 269.99737 * 10 9 8 12 12 H 1.07999 * 119.99509 * 141.59732 * 11 10 9 13 13 C 1.38804 * 119.99794 * 321.60362 * 11 10 9 14 14 N 1.31617 * 120.00284 * 339.26371 * 13 11 10 15 15 Si 1.86806 * 119.99919 * 159.26897 * 13 11 10 16 16 H 1.48495 * 109.47225 * 89.99660 * 15 13 11 17 17 H 1.48497 * 109.47054 * 209.99621 * 15 13 11 18 18 H 1.48505 * 109.46896 * 329.99505 * 15 13 11 19 19 C 1.46501 * 119.99778 * 90.00046 * 10 9 8 20 20 C 1.54269 * 110.03119 * 242.54786 * 19 10 9 21 21 C 1.54965 * 104.16040 * 217.13715 * 20 19 10 22 22 C 1.54890 * 102.77844 * 37.88931 * 21 20 19 23 23 C 1.53872 * 110.03404 * 125.33163 * 19 10 9 24 24 H 1.09000 * 109.47385 * 270.18004 * 1 2 3 25 25 H 1.09000 * 109.47019 * 30.18153 * 1 2 3 26 26 H 1.08998 * 109.46767 * 150.17568 * 1 2 3 27 27 H 1.07995 * 125.99212 * 179.72081 * 4 3 2 28 28 H 1.07997 * 126.58911 * 179.97438 * 5 4 3 29 29 H 1.09004 * 109.46829 * 204.70887 * 7 6 2 30 30 H 1.08995 * 109.46893 * 324.70962 * 7 6 2 31 31 H 1.09004 * 109.47214 * 299.99626 * 8 7 6 32 32 H 1.08995 * 109.47347 * 60.00214 * 8 7 6 33 33 H 1.09004 * 109.46778 * 299.99820 * 9 8 7 34 34 H 1.09004 * 109.46986 * 59.99768 * 9 8 7 35 35 H 0.97007 * 120.00503 * 175.04275 * 14 13 11 36 36 H 1.08999 * 110.01934 * 3.93447 * 19 10 9 37 37 H 1.08994 * 110.48530 * 335.78372 * 20 19 10 38 38 H 1.08996 * 110.48348 * 98.42862 * 20 19 10 39 39 H 1.09007 * 110.71927 * 279.57625 * 21 20 19 40 40 H 1.08999 * 110.92684 * 156.29472 * 21 20 19 41 41 H 1.09004 * 110.48806 * 203.40846 * 22 21 20 42 42 H 1.08990 * 110.60122 * 80.81534 * 22 21 20 43 43 H 1.09000 * 110.03249 * 238.57176 * 23 19 10 44 44 H 1.09006 * 110.03013 * 359.97438 * 23 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2676 1.0605 0.0000 4 6 3.5543 0.6819 -0.0063 5 6 3.5926 -0.6643 -0.0043 6 7 2.2941 -1.0973 0.0036 7 6 1.8425 -2.4910 0.0087 8 6 1.5583 -2.9402 -1.4260 9 6 1.0861 -4.3956 -1.4206 10 7 0.8133 -4.8256 -2.7942 11 6 -0.4373 -4.6617 -3.3275 12 1 -0.5495 -4.3703 -4.3613 13 6 -1.5606 -4.8701 -2.5392 14 7 -1.4715 -5.5971 -1.4456 15 14 -3.1989 -4.1189 -3.0304 16 1 -3.9384 -5.0690 -3.8996 17 1 -3.9994 -3.8370 -1.8119 18 1 -2.9611 -2.8534 -3.7702 19 6 1.8785 -5.4309 -3.5974 20 6 2.1750 -4.5522 -4.8303 21 6 2.4707 -5.5711 -5.9598 22 6 1.4572 -6.7062 -5.6711 23 6 1.4227 -6.8000 -4.1316 24 1 -0.3634 0.0032 1.0276 25 1 -0.3633 0.8884 -0.5167 26 1 -0.3633 -0.8916 -0.5111 27 1 4.4098 1.3410 -0.0121 28 1 4.4776 -1.2831 -0.0084 29 1 2.6188 -3.1229 0.4402 30 1 0.9328 -2.5760 0.6030 31 1 0.7820 -2.3084 -1.8575 32 1 2.4680 -2.8553 -2.0203 33 1 1.8621 -5.0277 -0.9889 34 1 0.1762 -4.4801 -0.8263 35 1 -2.2377 -5.6836 -0.8569 36 1 2.7800 -5.5461 -2.9956 37 1 1.3065 -3.9441 -5.0830 38 1 3.0444 -3.9204 -4.6482 39 1 3.4941 -5.9396 -5.8886 40 1 2.2878 -5.1301 -6.9396 41 1 1.8031 -7.6455 -6.1028 42 1 0.4720 -6.4488 -6.0597 43 1 2.1034 -7.5797 -3.7896 44 1 0.4091 -7.0143 -3.7928 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161974903.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:42 Heat of formation + Delta-G solvation = 60.169896 kcal Electronic energy + Delta-G solvation = -22261.420597 eV Core-core repulsion = 19214.537264 eV Total energy + Delta-G solvation = -3046.883334 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.81605 -37.85296 -35.46293 -33.86408 -31.50379 -31.39726 -30.01016 -27.86662 -26.83627 -26.53357 -25.44063 -23.00064 -21.11512 -20.77647 -19.96749 -19.39444 -19.08460 -16.92184 -16.09537 -15.44790 -15.22717 -14.92791 -14.59618 -14.27568 -13.78122 -13.54406 -13.26033 -13.04953 -12.76154 -12.59515 -12.58075 -12.18727 -12.07648 -11.60932 -11.43201 -11.08830 -10.93135 -10.66756 -10.61005 -10.45250 -10.33883 -10.25726 -10.17266 -9.78945 -9.71829 -9.67975 -9.56556 -9.24388 -8.51719 -8.10706 -6.63792 -5.82830 -3.46285 2.30509 3.08775 3.29953 3.36651 3.39003 3.42361 4.42116 4.73328 4.95686 5.02811 5.16068 5.24930 5.38669 5.43318 5.50840 5.53854 5.61157 5.63715 5.70708 5.86158 5.99656 6.03503 6.10286 6.12856 6.21372 6.24948 6.33471 6.43223 6.51425 6.53948 6.57031 6.62102 6.64032 6.82131 6.95094 7.00247 7.03066 7.13431 7.34951 7.46636 7.52753 7.77918 8.34866 8.46393 9.13264 9.75042 10.33654 11.13180 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.014167 B = 0.005890 C = 0.004650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.986218 B = 4752.641959 C = 6020.365194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.207 3.793 3 N -0.503 5.503 4 C -0.038 4.038 5 C -0.060 4.060 6 N -0.445 5.445 7 C 0.102 3.898 8 C -0.147 4.147 9 C 0.151 3.849 10 N -0.576 5.576 11 C -0.247 4.247 12 H 0.060 0.940 13 C 0.013 3.987 14 N -0.886 5.886 15 Si 0.887 3.113 16 H -0.286 1.286 17 H -0.289 1.289 18 H -0.278 1.278 19 C 0.171 3.829 20 C -0.135 4.135 21 C -0.123 4.123 22 C -0.118 4.118 23 C -0.131 4.131 24 H 0.076 0.924 25 H 0.086 0.914 26 H 0.081 0.919 27 H 0.164 0.836 28 H 0.169 0.831 29 H 0.086 0.914 30 H 0.090 0.910 31 H 0.067 0.933 32 H 0.050 0.950 33 H 0.024 0.976 34 H 0.095 0.905 35 H 0.253 0.747 36 H 0.045 0.955 37 H 0.072 0.928 38 H 0.044 0.956 39 H 0.054 0.946 40 H 0.052 0.948 41 H 0.047 0.953 42 H 0.061 0.939 43 H 0.040 0.960 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.431 3.247 1.062 8.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.055 4.055 3 N -0.223 5.223 4 C -0.187 4.187 5 C -0.194 4.194 6 N -0.127 5.127 7 C -0.020 4.020 8 C -0.188 4.188 9 C 0.023 3.977 10 N -0.294 5.294 11 C -0.376 4.376 12 H 0.077 0.923 13 C -0.187 4.187 14 N -0.528 5.528 15 Si 0.716 3.284 16 H -0.213 1.213 17 H -0.215 1.215 18 H -0.203 1.203 19 C 0.063 3.937 20 C -0.174 4.174 21 C -0.161 4.161 22 C -0.155 4.155 23 C -0.170 4.170 24 H 0.094 0.906 25 H 0.105 0.895 26 H 0.100 0.900 27 H 0.181 0.819 28 H 0.186 0.814 29 H 0.104 0.896 30 H 0.109 0.891 31 H 0.086 0.914 32 H 0.069 0.931 33 H 0.042 0.958 34 H 0.113 0.887 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.091 0.909 38 H 0.063 0.937 39 H 0.073 0.927 40 H 0.071 0.929 41 H 0.066 0.934 42 H 0.080 0.920 43 H 0.058 0.942 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 6.941 3.760 1.181 7.982 hybrid contribution -0.351 -0.473 -0.236 0.634 sum 6.590 3.287 0.945 7.425 Atomic orbital electron populations 1.20222 0.85187 1.04451 1.03205 1.23247 0.95694 0.81487 1.05082 1.70198 1.02217 1.28626 1.21228 1.22174 0.94752 0.92744 1.08987 1.22645 0.87395 0.96722 1.12665 1.45651 1.06216 1.08097 1.52732 1.22097 1.01199 0.77764 1.00972 1.22676 1.01393 1.02478 0.92255 1.20811 1.00283 0.88108 0.88449 1.43870 1.06949 1.67736 1.10861 1.18885 0.82004 1.39634 0.97107 0.92253 1.25125 0.97510 0.97366 0.98691 1.70062 1.30588 1.37178 1.14998 0.86563 0.84439 0.79624 0.77748 1.21265 1.21484 1.20340 1.21057 0.90675 0.90622 0.91315 1.22852 1.00400 0.97913 0.96271 1.22440 0.98377 0.97114 0.98158 1.22253 0.98897 0.97001 0.97386 1.22534 1.02916 0.97643 0.93880 0.90553 0.89538 0.90038 0.81864 0.81402 0.89595 0.89138 0.91449 0.93124 0.95765 0.88719 0.93692 0.93634 0.90887 0.93688 0.92729 0.92936 0.93431 0.91998 0.94156 0.89569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.00 10.04 36.01 0.36 -0.63 16 2 C 0.21 3.39 7.90 -155.41 -1.23 2.16 16 3 N -0.50 -8.75 11.25 -10.82 -0.12 -8.87 16 4 C -0.04 -0.57 11.87 -17.81 -0.21 -0.78 16 5 C -0.06 -0.86 11.58 -16.56 -0.19 -1.05 16 6 N -0.45 -6.86 2.75 -113.90 -0.31 -7.17 16 7 C 0.10 1.49 5.68 -4.04 -0.02 1.47 16 8 C -0.15 -2.59 5.86 -26.73 -0.16 -2.75 16 9 C 0.15 3.09 5.28 -4.04 -0.02 3.07 16 10 N -0.58 -12.85 2.38 -164.39 -0.39 -13.24 16 11 C -0.25 -6.12 7.75 -15.06 -0.12 -6.23 16 12 H 0.06 1.52 6.94 -52.49 -0.36 1.16 16 13 C 0.01 0.33 4.96 -17.43 -0.09 0.25 16 14 N -0.89 -23.43 11.48 55.49 0.64 -22.79 16 15 Si 0.89 20.36 29.61 -169.99 -5.03 15.33 16 16 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 17 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 18 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 19 C 0.17 3.37 3.42 -66.81 -0.23 3.14 16 20 C -0.13 -2.43 6.43 -25.03 -0.16 -2.59 16 21 C -0.12 -1.93 6.91 -24.70 -0.17 -2.10 16 22 C -0.12 -1.98 6.83 -25.07 -0.17 -2.15 16 23 C -0.13 -2.53 6.24 -25.61 -0.16 -2.69 16 24 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 25 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 26 H 0.08 1.16 7.33 -51.93 -0.38 0.78 16 27 H 0.16 1.97 8.06 -52.49 -0.42 1.54 16 28 H 0.17 1.87 8.06 -52.49 -0.42 1.45 16 29 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.09 1.29 7.94 -51.93 -0.41 0.88 16 31 H 0.07 1.33 7.63 -51.93 -0.40 0.94 16 32 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.02 0.47 7.91 -51.93 -0.41 0.06 16 34 H 0.10 2.20 5.55 -51.93 -0.29 1.91 16 35 H 0.25 6.54 8.32 -40.82 -0.34 6.20 16 36 H 0.05 0.86 7.81 -51.93 -0.41 0.46 16 37 H 0.07 1.47 6.64 -51.93 -0.34 1.13 16 38 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 44 H 0.09 1.99 7.17 -51.93 -0.37 1.62 16 LS Contribution 350.31 15.07 5.28 5.28 Total: -1.00 -27.97 350.31 -10.09 -38.06 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -7.58 Total: 4.29 kcal Atomic # 6 Polarization: -8.32 SS G_CDS: -2.57 Total: -10.88 kcal Atomic # 7 Polarization: -51.89 SS G_CDS: -0.19 Total: -52.08 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.03 Total: 15.33 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -27.97 -10.09 -38.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161974903.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.234 kcal (2) G-P(sol) polarization free energy of solvation -27.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds