Wall clock time and date at job start Mon Mar 30 2020 02:39:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30502 * 125.64942 * 2 1 4 4 C 1.34125 * 109.25441 * 180.28581 * 3 2 1 5 5 C 1.34672 * 108.02183 * 359.72670 * 4 3 2 6 6 N 1.35043 * 125.65059 * 179.81269 * 2 1 3 7 7 C 1.46504 * 126.39628 * 359.97438 * 6 2 1 8 8 C 1.52997 * 109.47005 * 84.71026 * 7 6 2 9 9 C 1.53004 * 109.46989 * 180.02562 * 8 7 6 10 10 N 1.46498 * 109.47209 * 179.97438 * 9 8 7 11 11 C 1.36939 * 120.00232 * 269.99737 * 10 9 8 12 12 H 1.07999 * 119.99509 * 141.59732 * 11 10 9 13 13 C 1.38804 * 119.99794 * 321.60362 * 11 10 9 14 14 N 1.31617 * 120.00284 * 339.26371 * 13 11 10 15 15 Si 1.86806 * 119.99919 * 159.26897 * 13 11 10 16 16 H 1.48495 * 109.47225 * 89.99660 * 15 13 11 17 17 H 1.48497 * 109.47054 * 209.99621 * 15 13 11 18 18 H 1.48505 * 109.46896 * 329.99505 * 15 13 11 19 19 C 1.46501 * 119.99778 * 90.00046 * 10 9 8 20 20 C 1.54269 * 110.03119 * 242.54786 * 19 10 9 21 21 C 1.54965 * 104.16040 * 217.13715 * 20 19 10 22 22 C 1.54890 * 102.77844 * 37.88931 * 21 20 19 23 23 C 1.53872 * 110.03404 * 125.33163 * 19 10 9 24 24 H 1.09000 * 109.47385 * 270.18004 * 1 2 3 25 25 H 1.09000 * 109.47019 * 30.18153 * 1 2 3 26 26 H 1.08998 * 109.46767 * 150.17568 * 1 2 3 27 27 H 1.07995 * 125.99212 * 179.72081 * 4 3 2 28 28 H 1.07997 * 126.58911 * 179.97438 * 5 4 3 29 29 H 1.09004 * 109.46829 * 204.70887 * 7 6 2 30 30 H 1.08995 * 109.46893 * 324.70962 * 7 6 2 31 31 H 1.09004 * 109.47214 * 299.99626 * 8 7 6 32 32 H 1.08995 * 109.47347 * 60.00214 * 8 7 6 33 33 H 1.09004 * 109.46778 * 299.99820 * 9 8 7 34 34 H 1.09004 * 109.46986 * 59.99768 * 9 8 7 35 35 H 0.97007 * 120.00503 * 175.04275 * 14 13 11 36 36 H 1.08999 * 110.01934 * 3.93447 * 19 10 9 37 37 H 1.08994 * 110.48530 * 335.78372 * 20 19 10 38 38 H 1.08996 * 110.48348 * 98.42862 * 20 19 10 39 39 H 1.09007 * 110.71927 * 279.57625 * 21 20 19 40 40 H 1.08999 * 110.92684 * 156.29472 * 21 20 19 41 41 H 1.09004 * 110.48806 * 203.40846 * 22 21 20 42 42 H 1.08990 * 110.60122 * 80.81534 * 22 21 20 43 43 H 1.09000 * 110.03249 * 238.57176 * 23 19 10 44 44 H 1.09006 * 110.03013 * 359.97438 * 23 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2676 1.0605 0.0000 4 6 3.5543 0.6819 -0.0063 5 6 3.5926 -0.6643 -0.0043 6 7 2.2941 -1.0973 0.0036 7 6 1.8425 -2.4910 0.0087 8 6 1.5583 -2.9402 -1.4260 9 6 1.0861 -4.3956 -1.4206 10 7 0.8133 -4.8256 -2.7942 11 6 -0.4373 -4.6617 -3.3275 12 1 -0.5495 -4.3703 -4.3613 13 6 -1.5606 -4.8701 -2.5392 14 7 -1.4715 -5.5971 -1.4456 15 14 -3.1989 -4.1189 -3.0304 16 1 -3.9384 -5.0690 -3.8996 17 1 -3.9994 -3.8370 -1.8119 18 1 -2.9611 -2.8534 -3.7702 19 6 1.8785 -5.4309 -3.5974 20 6 2.1750 -4.5522 -4.8303 21 6 2.4707 -5.5711 -5.9598 22 6 1.4572 -6.7062 -5.6711 23 6 1.4227 -6.8000 -4.1316 24 1 -0.3634 0.0032 1.0276 25 1 -0.3633 0.8884 -0.5167 26 1 -0.3633 -0.8916 -0.5111 27 1 4.4098 1.3410 -0.0121 28 1 4.4776 -1.2831 -0.0084 29 1 2.6188 -3.1229 0.4402 30 1 0.9328 -2.5760 0.6030 31 1 0.7820 -2.3084 -1.8575 32 1 2.4680 -2.8553 -2.0203 33 1 1.8621 -5.0277 -0.9889 34 1 0.1762 -4.4801 -0.8263 35 1 -2.2377 -5.6836 -0.8569 36 1 2.7800 -5.5461 -2.9956 37 1 1.3065 -3.9441 -5.0830 38 1 3.0444 -3.9204 -4.6482 39 1 3.4941 -5.9396 -5.8886 40 1 2.2878 -5.1301 -6.9396 41 1 1.8031 -7.6455 -6.1028 42 1 0.4720 -6.4488 -6.0597 43 1 2.1034 -7.5797 -3.7896 44 1 0.4091 -7.0143 -3.7928 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161974903.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:41 Heat of formation + Delta-G solvation = 48.048139 kcal Electronic energy + Delta-G solvation = -22261.946236 eV Core-core repulsion = 19214.537264 eV Total energy + Delta-G solvation = -3047.408972 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.98282 -39.40803 -36.89603 -35.37303 -33.16861 -32.61109 -31.47951 -29.32334 -28.26672 -27.83588 -27.00945 -24.56479 -22.38622 -22.22444 -21.33642 -20.73046 -20.59367 -18.36400 -17.63130 -17.06712 -16.56258 -16.34773 -16.14077 -15.75577 -15.04865 -14.99550 -14.60899 -14.55163 -14.05515 -13.94112 -13.83754 -13.53279 -13.25493 -13.18829 -12.94977 -12.70056 -12.69559 -12.33711 -12.17922 -12.01574 -11.80870 -11.75397 -11.72356 -11.34524 -11.24092 -11.16542 -10.93523 -10.53229 -10.42280 -9.24377 -8.48999 -7.73270 -5.40090 1.14544 1.43230 1.49097 1.55745 1.92954 2.19254 2.53771 3.27953 3.57764 3.64101 3.80051 3.94397 3.98934 4.04107 4.19302 4.37799 4.43319 4.43960 4.49942 4.65536 4.66459 4.70324 4.76339 4.81869 4.87533 4.93775 4.96211 4.99016 4.99638 5.06189 5.21090 5.22868 5.33863 5.37549 5.49837 5.58956 5.62252 5.69158 5.76423 5.88358 5.90330 6.28977 6.54683 7.17715 7.25322 7.94681 8.46133 9.17470 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.014167 B = 0.005890 C = 0.004650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.986218 B = 4752.641959 C = 6020.365194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.187 3.813 3 N -0.533 5.533 4 C -0.055 4.055 5 C -0.056 4.056 6 N -0.450 5.450 7 C 0.111 3.889 8 C -0.125 4.125 9 C 0.153 3.847 10 N -0.589 5.589 11 C -0.239 4.239 12 H 0.046 0.954 13 C -0.027 4.027 14 N -0.910 5.910 15 Si 0.934 3.066 16 H -0.291 1.291 17 H -0.289 1.289 18 H -0.278 1.278 19 C 0.162 3.838 20 C -0.129 4.129 21 C -0.112 4.112 22 C -0.114 4.114 23 C -0.128 4.128 24 H 0.092 0.908 25 H 0.090 0.910 26 H 0.070 0.930 27 H 0.188 0.812 28 H 0.201 0.799 29 H 0.111 0.889 30 H 0.092 0.908 31 H 0.039 0.961 32 H 0.050 0.950 33 H 0.034 0.966 34 H 0.068 0.932 35 H 0.249 0.751 36 H 0.058 0.942 37 H 0.044 0.956 38 H 0.058 0.942 39 H 0.079 0.921 40 H 0.066 0.934 41 H 0.072 0.928 42 H 0.043 0.957 43 H 0.055 0.945 44 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.431 3.246 0.701 9.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.076 4.076 3 N -0.253 5.253 4 C -0.202 4.202 5 C -0.190 4.190 6 N -0.132 5.132 7 C -0.011 4.011 8 C -0.165 4.165 9 C 0.026 3.974 10 N -0.309 5.309 11 C -0.370 4.370 12 H 0.064 0.936 13 C -0.225 4.225 14 N -0.554 5.554 15 Si 0.763 3.237 16 H -0.218 1.218 17 H -0.215 1.215 18 H -0.203 1.203 19 C 0.056 3.944 20 C -0.169 4.169 21 C -0.150 4.150 22 C -0.152 4.152 23 C -0.167 4.167 24 H 0.111 0.889 25 H 0.109 0.891 26 H 0.089 0.911 27 H 0.205 0.795 28 H 0.218 0.782 29 H 0.130 0.870 30 H 0.110 0.890 31 H 0.058 0.942 32 H 0.068 0.932 33 H 0.053 0.947 34 H 0.086 0.914 35 H 0.058 0.942 36 H 0.076 0.924 37 H 0.063 0.937 38 H 0.077 0.923 39 H 0.097 0.903 40 H 0.085 0.915 41 H 0.091 0.909 42 H 0.062 0.938 43 H 0.074 0.926 44 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 8.959 3.773 0.810 9.755 hybrid contribution -0.894 -0.478 -0.144 1.024 sum 8.065 3.295 0.666 8.737 Atomic orbital electron populations 1.20244 0.84254 1.04081 1.04183 1.23628 0.96571 0.81787 1.05569 1.70179 1.03535 1.29489 1.22133 1.22693 0.94702 0.93804 1.09049 1.23218 0.87753 0.96963 1.11050 1.45712 1.06742 1.07929 1.52834 1.21976 1.02338 0.77944 0.98827 1.22305 1.00106 0.99908 0.94209 1.20729 0.99399 0.89982 0.87296 1.44061 1.06815 1.68394 1.11613 1.18889 0.83331 1.38267 0.96513 0.93617 1.25574 0.99533 0.98249 0.99097 1.70151 1.30898 1.38567 1.15827 0.85820 0.81914 0.78759 0.77160 1.21783 1.21492 1.20317 1.21272 0.90256 0.91021 0.91899 1.22736 0.99699 0.98048 0.96395 1.22406 0.99170 0.95599 0.97797 1.22220 0.98689 0.98913 0.95376 1.22449 1.00457 0.97938 0.95869 0.88910 0.89146 0.91065 0.79491 0.78174 0.87035 0.88981 0.94202 0.93170 0.94723 0.91380 0.94153 0.92424 0.93715 0.92345 0.90273 0.91482 0.90887 0.93798 0.92609 0.94068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.90 10.04 71.24 0.72 -1.18 16 2 C 0.19 5.97 7.90 138.13 1.09 7.06 16 3 N -0.53 -18.07 11.25 -188.13 -2.12 -20.18 16 4 C -0.06 -1.55 11.87 83.52 0.99 -0.56 16 5 C -0.06 -1.46 11.58 83.09 0.96 -0.50 16 6 N -0.45 -13.15 2.75 -514.28 -1.41 -14.56 16 7 C 0.11 3.09 5.68 86.38 0.49 3.58 16 8 C -0.12 -4.31 5.86 30.59 0.18 -4.13 16 9 C 0.15 6.25 5.28 86.38 0.46 6.71 16 10 N -0.59 -26.50 2.38 -674.01 -1.60 -28.10 16 11 C -0.24 -12.14 7.75 84.03 0.65 -11.49 16 12 H 0.05 2.42 6.94 -2.91 -0.02 2.40 16 13 C -0.03 -1.41 4.96 84.86 0.42 -0.99 16 14 N -0.91 -49.32 11.48 21.65 0.25 -49.07 16 15 Si 0.93 42.80 29.61 68.60 2.03 44.83 16 16 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 17 H -0.29 -13.13 7.11 99.48 0.71 -12.43 16 18 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 19 C 0.16 6.24 3.42 45.72 0.16 6.39 16 20 C -0.13 -4.46 6.43 31.70 0.20 -4.25 16 21 C -0.11 -3.18 6.91 31.91 0.22 -2.95 16 22 C -0.11 -3.65 6.83 31.67 0.22 -3.43 16 23 C -0.13 -4.86 6.24 31.32 0.20 -4.67 16 24 H 0.09 2.17 8.14 -2.39 -0.02 2.16 16 25 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 26 H 0.07 2.07 7.33 -2.39 -0.02 2.05 16 27 H 0.19 4.09 8.06 -2.91 -0.02 4.06 16 28 H 0.20 3.68 8.06 -2.91 -0.02 3.66 16 29 H 0.11 2.55 8.14 -2.39 -0.02 2.53 16 30 H 0.09 2.55 7.94 -2.39 -0.02 2.53 16 31 H 0.04 1.59 7.63 -2.39 -0.02 1.57 16 32 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.03 1.32 7.91 -2.39 -0.02 1.30 16 34 H 0.07 3.22 5.55 -2.38 -0.01 3.20 16 35 H 0.25 13.20 8.32 -92.70 -0.77 12.43 16 36 H 0.06 2.06 7.81 -2.39 -0.02 2.05 16 37 H 0.04 1.79 6.64 -2.39 -0.02 1.77 16 38 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 39 H 0.08 1.91 8.14 -2.38 -0.02 1.89 16 40 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 41 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 42 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 43 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 44 H 0.04 1.93 7.17 -2.38 -0.02 1.92 16 Total: -1.00 -61.14 350.31 5.04 -56.09 By element: Atomic # 1 Polarization: 20.47 SS G_CDS: 0.95 Total: 21.42 kcal Atomic # 6 Polarization: -17.37 SS G_CDS: 6.95 Total: -10.42 kcal Atomic # 7 Polarization: -107.03 SS G_CDS: -4.89 Total: -111.92 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Total: -61.14 5.04 -56.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161974903.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.142 kcal (2) G-P(sol) polarization free energy of solvation -61.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds