Wall clock time and date at job start Mon Mar 30 2020 02:29:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30833 * 125.89740 * 2 1 4 4 N 1.40089 * 108.20483 * 180.26297 * 3 2 1 5 5 C 1.46494 * 126.03731 * 179.69679 * 4 3 2 6 6 C 1.34950 * 107.92139 * 359.71567 * 4 3 2 7 7 C 1.50703 * 126.12037 * 179.97438 * 6 4 3 8 8 C 1.35314 * 107.74668 * 0.02562 * 6 4 3 9 9 C 1.50704 * 126.03633 * 180.02562 * 8 6 4 10 10 N 1.46896 * 109.47244 * 90.00077 * 9 8 6 11 11 C 1.46898 * 111.00014 * 190.00224 * 10 9 8 12 12 C 1.50693 * 109.47538 * 76.31169 * 11 10 9 13 13 H 1.08000 * 119.99823 * 354.90485 * 12 11 10 14 14 C 1.37877 * 120.00136 * 175.17563 * 12 11 10 15 15 N 1.31515 * 120.00131 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 120.00161 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.46998 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.47360 * 120.00125 * 16 14 12 19 19 H 1.48493 * 109.47196 * 240.00384 * 16 14 12 20 20 C 1.46897 * 111.00052 * 66.04263 * 10 9 8 21 21 C 1.53004 * 109.47465 * 196.22607 * 20 10 9 22 22 C 1.53004 * 117.49896 * 243.56297 * 21 20 10 23 23 C 1.52991 * 117.49935 * 174.89940 * 21 20 10 24 24 H 1.09009 * 109.46922 * 270.20865 * 1 2 3 25 25 H 1.08999 * 109.47436 * 30.21137 * 1 2 3 26 26 H 1.09007 * 109.47135 * 150.21768 * 1 2 3 27 27 H 1.08993 * 109.47528 * 270.02525 * 5 4 3 28 28 H 1.09004 * 109.47108 * 30.02576 * 5 4 3 29 29 H 1.09002 * 109.46984 * 150.02113 * 5 4 3 30 30 H 1.09003 * 109.47118 * 270.02201 * 7 6 4 31 31 H 1.09000 * 109.47485 * 30.02981 * 7 6 4 32 32 H 1.08999 * 109.46868 * 150.02698 * 7 6 4 33 33 H 1.08999 * 109.46955 * 329.99955 * 9 8 6 34 34 H 1.09001 * 109.46951 * 210.00422 * 9 8 6 35 35 H 1.09003 * 109.46988 * 316.30978 * 11 10 9 36 36 H 1.09005 * 109.47165 * 196.31656 * 11 10 9 37 37 H 0.96996 * 119.99745 * 180.02562 * 15 14 12 38 38 H 1.08997 * 109.47142 * 316.22939 * 20 10 9 39 39 H 1.09007 * 109.46806 * 76.22698 * 20 10 9 40 40 H 1.09004 * 115.54527 * 29.22826 * 21 20 10 41 41 H 1.08992 * 117.49859 * 359.97438 * 22 21 20 42 42 H 1.09000 * 117.49417 * 145.02097 * 22 21 20 43 43 H 1.09001 * 117.49759 * 214.97655 * 23 21 20 44 44 H 1.08997 * 117.50268 * 0.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0598 0.0000 4 7 3.6087 0.6341 -0.0061 5 6 4.7898 1.5008 -0.0144 6 6 3.6142 -0.7154 -0.0034 7 6 4.8350 -1.5989 -0.0085 8 6 2.3271 -1.1330 0.0036 9 6 1.8599 -2.5658 0.0093 10 7 1.7145 -3.0279 1.3961 11 6 1.4920 -4.4791 1.4468 12 6 2.7949 -5.1959 1.2028 13 1 3.6807 -4.6338 0.9462 14 6 2.8548 -6.5698 1.3015 15 7 1.7748 -7.2548 1.6081 16 14 4.4700 -7.4584 0.9996 17 1 5.5268 -6.4673 0.6739 18 1 4.8568 -8.2107 2.2202 19 1 4.3106 -8.4035 -0.1346 20 6 0.6345 -2.3054 2.0813 21 6 0.7674 -2.5030 3.5927 22 6 -0.3649 -3.2398 4.3110 23 6 -0.1970 -1.7292 4.4937 24 1 -0.3633 0.0037 1.0278 25 1 -0.3634 0.8881 -0.5171 26 1 -0.3634 -0.8920 -0.5105 27 1 5.0770 1.7137 -1.0441 28 1 4.5591 2.4343 0.4989 29 1 5.6121 0.9992 0.4959 30 1 5.1238 -1.8137 -1.0374 31 1 5.6539 -1.0901 0.5001 32 1 4.6104 -2.5320 0.5081 33 1 2.5910 -3.1883 -0.5064 34 1 0.8988 -2.6365 -0.5000 35 1 0.7717 -4.7632 0.6796 36 1 1.1047 -4.7532 2.4281 37 1 1.8171 -8.2214 1.6779 38 1 0.7020 -1.2432 1.8464 39 1 -0.3291 -2.6908 1.7478 40 1 1.7820 -2.6601 3.9588 41 1 -1.2047 -3.5833 3.7070 42 1 -0.0953 -3.8812 5.1501 43 1 0.1830 -1.3776 5.4530 44 1 -0.9264 -1.0797 4.0099 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176257491.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:08 Heat of formation + Delta-G solvation = 99.303000 kcal Electronic energy + Delta-G solvation = -22434.129616 eV Core-core repulsion = 19388.943221 eV Total energy + Delta-G solvation = -3045.186395 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.07194 -37.65218 -35.45274 -33.89122 -32.54972 -31.67029 -29.47745 -28.00662 -27.45174 -25.85137 -24.70201 -23.27576 -21.89037 -20.98734 -19.67253 -19.22370 -18.82034 -16.36187 -16.12803 -15.61116 -15.30447 -14.58291 -14.33313 -13.95937 -13.78154 -13.62500 -13.05363 -12.98084 -12.90615 -12.80215 -12.32764 -12.25611 -11.92860 -11.84401 -11.63875 -11.45616 -11.21883 -11.10694 -11.06837 -10.68453 -10.57013 -10.51605 -10.01000 -9.90609 -9.74432 -9.25749 -9.06523 -8.73600 -8.36697 -7.87968 -7.08933 -5.96033 -3.96373 2.17094 2.75253 3.08302 3.32810 3.40558 3.43666 4.32074 4.47185 4.65718 4.98400 5.02373 5.14249 5.19393 5.31498 5.36496 5.39794 5.40082 5.45296 5.59996 5.68813 5.78151 5.80725 5.89137 5.91316 5.98196 6.05608 6.11505 6.27679 6.28996 6.34735 6.42398 6.47171 6.55140 6.61818 6.75094 6.90446 7.06903 7.36681 7.39050 7.47679 7.90130 8.06123 8.23222 8.36660 8.66000 9.11512 9.67031 11.14494 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.013003 B = 0.006583 C = 0.004904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2152.885793 B = 4252.597665 C = 5708.526428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.078 3.922 3 N -0.310 5.310 4 N -0.383 5.383 5 C 0.107 3.893 6 C 0.101 3.899 7 C -0.094 4.094 8 C -0.214 4.214 9 C 0.139 3.861 10 N -0.527 5.527 11 C 0.191 3.809 12 C -0.498 4.498 13 H 0.062 0.938 14 C 0.054 3.946 15 N -0.899 5.899 16 Si 0.892 3.108 17 H -0.273 1.273 18 H -0.286 1.286 19 H -0.286 1.286 20 C 0.082 3.918 21 C -0.125 4.125 22 C -0.179 4.179 23 C -0.192 4.192 24 H 0.077 0.923 25 H 0.067 0.933 26 H 0.076 0.924 27 H 0.068 0.932 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.073 0.927 31 H 0.062 0.938 32 H 0.103 0.897 33 H 0.084 0.916 34 H 0.025 0.975 35 H -0.014 1.014 36 H 0.039 0.961 37 H 0.259 0.741 38 H 0.072 0.928 39 H 0.021 0.979 40 H 0.108 0.892 41 H 0.089 0.911 42 H 0.088 0.912 43 H 0.086 0.914 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.488 14.155 -1.541 14.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.088 4.088 3 N -0.133 5.133 4 N -0.166 5.166 5 C -0.035 4.035 6 C -0.026 4.026 7 C -0.152 4.152 8 C -0.225 4.225 9 C 0.011 3.989 10 N -0.251 5.251 11 C 0.066 3.934 12 C -0.537 4.537 13 H 0.080 0.920 14 C -0.146 4.146 15 N -0.539 5.539 16 Si 0.720 3.280 17 H -0.197 1.197 18 H -0.212 1.212 19 H -0.213 1.213 20 C -0.047 4.047 21 C -0.144 4.144 22 C -0.216 4.216 23 C -0.229 4.229 24 H 0.095 0.905 25 H 0.086 0.914 26 H 0.095 0.905 27 H 0.086 0.914 28 H 0.102 0.898 29 H 0.102 0.898 30 H 0.092 0.908 31 H 0.081 0.919 32 H 0.122 0.878 33 H 0.103 0.897 34 H 0.043 0.957 35 H 0.004 0.996 36 H 0.057 0.943 37 H 0.068 0.932 38 H 0.090 0.910 39 H 0.039 0.961 40 H 0.126 0.874 41 H 0.107 0.893 42 H 0.107 0.893 43 H 0.104 0.896 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 2.041 15.428 -1.274 15.614 hybrid contribution 0.157 -1.614 -0.442 1.681 sum 2.198 13.814 -1.717 14.093 Atomic orbital electron populations 1.20269 0.87379 1.02836 1.02766 1.22114 0.96447 0.90680 0.99585 1.77179 0.86324 1.22614 1.27170 1.48181 1.05170 1.04277 1.58958 1.21698 0.84392 0.94749 1.02686 1.20833 0.97252 0.83802 1.00698 1.20519 0.92277 0.99569 1.02849 1.19818 0.91006 0.96397 1.15312 1.20203 0.98940 0.89055 0.90749 1.62092 1.42433 1.07466 1.13134 1.19779 0.96274 0.80403 0.96957 1.21202 0.95727 0.90870 1.45888 0.92002 1.24968 0.96257 0.97640 0.95777 1.69967 1.27710 1.06831 1.49383 0.86539 0.84064 0.79708 0.77657 1.19714 1.21203 1.21269 1.21755 0.92782 0.98683 0.91469 1.22265 0.95761 1.02460 0.93898 1.22962 1.01540 0.93636 1.03444 1.22930 1.03913 0.94751 1.01323 0.90495 0.91419 0.90523 0.91375 0.89830 0.89808 0.90814 0.91942 0.87788 0.89729 0.95715 0.99643 0.94296 0.93154 0.90998 0.96125 0.87354 0.89275 0.89317 0.89573 0.89588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.00 9.22 36.01 0.33 -0.67 16 2 C 0.08 1.29 6.28 -82.41 -0.52 0.78 16 3 N -0.31 -5.26 12.58 33.67 0.42 -4.83 16 4 N -0.38 -5.80 4.01 -63.89 -0.26 -6.06 16 5 C 0.11 1.07 11.27 59.84 0.67 1.75 16 6 C 0.10 1.63 6.93 -82.26 -0.57 1.06 16 7 C -0.09 -1.31 9.72 36.01 0.35 -0.96 16 8 C -0.21 -3.78 5.00 -105.05 -0.53 -4.30 16 9 C 0.14 2.70 4.69 -4.98 -0.02 2.67 16 10 N -0.53 -11.15 4.37 -237.52 -1.04 -12.19 16 11 C 0.19 4.84 4.59 -4.98 -0.02 4.82 16 12 C -0.50 -13.52 8.63 -34.44 -0.30 -13.82 16 13 H 0.06 1.64 7.45 -52.49 -0.39 1.25 16 14 C 0.05 1.51 5.46 -17.82 -0.10 1.41 16 15 N -0.90 -26.39 13.29 55.43 0.74 -25.65 16 16 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 17 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 18 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 20 C 0.08 1.52 4.86 -3.82 -0.02 1.50 16 21 C -0.13 -2.25 4.99 -90.62 -0.45 -2.70 16 22 C -0.18 -2.97 10.01 -26.69 -0.27 -3.24 16 23 C -0.19 -2.83 10.25 -26.70 -0.27 -3.10 16 24 H 0.08 0.99 6.85 -51.92 -0.36 0.64 16 25 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 26 H 0.08 1.00 7.25 -51.93 -0.38 0.63 16 27 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.08 0.68 7.05 -51.93 -0.37 0.32 16 30 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.06 0.71 7.08 -51.93 -0.37 0.35 16 32 H 0.10 1.72 7.55 -51.93 -0.39 1.33 16 33 H 0.08 1.74 6.99 -51.93 -0.36 1.37 16 34 H 0.02 0.47 7.23 -51.93 -0.38 0.10 16 35 H -0.01 -0.39 7.99 -51.93 -0.41 -0.80 16 36 H 0.04 1.07 6.98 -51.93 -0.36 0.70 16 37 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 38 H 0.07 1.26 3.67 -51.93 -0.19 1.07 16 39 H 0.02 0.39 7.78 -51.93 -0.40 -0.01 16 40 H 0.11 2.14 8.14 -51.93 -0.42 1.71 16 41 H 0.09 1.48 8.03 -51.93 -0.42 1.06 16 42 H 0.09 1.45 8.14 -51.93 -0.42 1.02 16 43 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 44 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 352.37 15.07 5.31 5.31 Total: -1.00 -31.38 352.37 -8.85 -40.23 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: -7.29 Total: 1.78 kcal Atomic # 6 Polarization: -13.09 SS G_CDS: -1.71 Total: -14.80 kcal Atomic # 7 Polarization: -48.60 SS G_CDS: -0.13 Total: -48.73 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.38 -8.85 -40.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176257491.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.530 kcal (2) G-P(sol) polarization free energy of solvation -31.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds