Wall clock time and date at job start Mon Mar 30 2020 02:29:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30833 * 125.89740 * 2 1 4 4 N 1.40089 * 108.20483 * 180.26297 * 3 2 1 5 5 C 1.46494 * 126.03731 * 179.69679 * 4 3 2 6 6 C 1.34950 * 107.92139 * 359.71567 * 4 3 2 7 7 C 1.50703 * 126.12037 * 179.97438 * 6 4 3 8 8 C 1.35314 * 107.74668 * 0.02562 * 6 4 3 9 9 C 1.50704 * 126.03633 * 180.02562 * 8 6 4 10 10 N 1.46896 * 109.47244 * 90.00077 * 9 8 6 11 11 C 1.46898 * 111.00014 * 190.00224 * 10 9 8 12 12 C 1.50693 * 109.47538 * 76.31169 * 11 10 9 13 13 H 1.08000 * 119.99823 * 354.90485 * 12 11 10 14 14 C 1.37877 * 120.00136 * 175.17563 * 12 11 10 15 15 N 1.31515 * 120.00131 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 120.00161 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.46998 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.47360 * 120.00125 * 16 14 12 19 19 H 1.48493 * 109.47196 * 240.00384 * 16 14 12 20 20 C 1.46897 * 111.00052 * 66.04263 * 10 9 8 21 21 C 1.53004 * 109.47465 * 196.22607 * 20 10 9 22 22 C 1.53004 * 117.49896 * 243.56297 * 21 20 10 23 23 C 1.52991 * 117.49935 * 174.89940 * 21 20 10 24 24 H 1.09009 * 109.46922 * 270.20865 * 1 2 3 25 25 H 1.08999 * 109.47436 * 30.21137 * 1 2 3 26 26 H 1.09007 * 109.47135 * 150.21768 * 1 2 3 27 27 H 1.08993 * 109.47528 * 270.02525 * 5 4 3 28 28 H 1.09004 * 109.47108 * 30.02576 * 5 4 3 29 29 H 1.09002 * 109.46984 * 150.02113 * 5 4 3 30 30 H 1.09003 * 109.47118 * 270.02201 * 7 6 4 31 31 H 1.09000 * 109.47485 * 30.02981 * 7 6 4 32 32 H 1.08999 * 109.46868 * 150.02698 * 7 6 4 33 33 H 1.08999 * 109.46955 * 329.99955 * 9 8 6 34 34 H 1.09001 * 109.46951 * 210.00422 * 9 8 6 35 35 H 1.09003 * 109.46988 * 316.30978 * 11 10 9 36 36 H 1.09005 * 109.47165 * 196.31656 * 11 10 9 37 37 H 0.96996 * 119.99745 * 180.02562 * 15 14 12 38 38 H 1.08997 * 109.47142 * 316.22939 * 20 10 9 39 39 H 1.09007 * 109.46806 * 76.22698 * 20 10 9 40 40 H 1.09004 * 115.54527 * 29.22826 * 21 20 10 41 41 H 1.08992 * 117.49859 * 359.97438 * 22 21 20 42 42 H 1.09000 * 117.49417 * 145.02097 * 22 21 20 43 43 H 1.09001 * 117.49759 * 214.97655 * 23 21 20 44 44 H 1.08997 * 117.50268 * 0.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0598 0.0000 4 7 3.6087 0.6341 -0.0061 5 6 4.7898 1.5008 -0.0144 6 6 3.6142 -0.7154 -0.0034 7 6 4.8350 -1.5989 -0.0085 8 6 2.3271 -1.1330 0.0036 9 6 1.8599 -2.5658 0.0093 10 7 1.7145 -3.0279 1.3961 11 6 1.4920 -4.4791 1.4468 12 6 2.7949 -5.1959 1.2028 13 1 3.6807 -4.6338 0.9462 14 6 2.8548 -6.5698 1.3015 15 7 1.7748 -7.2548 1.6081 16 14 4.4700 -7.4584 0.9996 17 1 5.5268 -6.4673 0.6739 18 1 4.8568 -8.2107 2.2202 19 1 4.3106 -8.4035 -0.1346 20 6 0.6345 -2.3054 2.0813 21 6 0.7674 -2.5030 3.5927 22 6 -0.3649 -3.2398 4.3110 23 6 -0.1970 -1.7292 4.4937 24 1 -0.3633 0.0037 1.0278 25 1 -0.3634 0.8881 -0.5171 26 1 -0.3634 -0.8920 -0.5105 27 1 5.0770 1.7137 -1.0441 28 1 4.5591 2.4343 0.4989 29 1 5.6121 0.9992 0.4959 30 1 5.1238 -1.8137 -1.0374 31 1 5.6539 -1.0901 0.5001 32 1 4.6104 -2.5320 0.5081 33 1 2.5910 -3.1883 -0.5064 34 1 0.8988 -2.6365 -0.5000 35 1 0.7717 -4.7632 0.6796 36 1 1.1047 -4.7532 2.4281 37 1 1.8171 -8.2214 1.6779 38 1 0.7020 -1.2432 1.8464 39 1 -0.3291 -2.6908 1.7478 40 1 1.7820 -2.6601 3.9588 41 1 -1.2047 -3.5833 3.7070 42 1 -0.0953 -3.8812 5.1501 43 1 0.1830 -1.3776 5.4530 44 1 -0.9264 -1.0797 4.0099 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176257491.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:07 Heat of formation + Delta-G solvation = 80.484242 kcal Electronic energy + Delta-G solvation = -22434.945659 eV Core-core repulsion = 19388.943221 eV Total energy + Delta-G solvation = -3046.002437 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.30101 -39.16231 -36.95744 -35.14893 -34.47924 -32.99798 -30.55916 -29.56257 -29.09990 -27.15883 -26.06535 -24.93480 -23.16196 -22.69377 -21.13829 -20.42424 -20.14164 -18.44946 -17.30980 -17.00517 -16.68841 -16.36310 -15.75853 -15.41427 -15.23302 -14.78849 -14.38011 -14.31080 -14.21699 -13.95622 -13.84204 -13.47385 -13.31289 -13.20595 -12.90289 -12.84187 -12.72763 -12.63909 -12.44037 -12.41568 -12.31230 -12.10850 -11.75393 -11.33917 -11.29847 -11.02967 -10.62009 -10.49756 -9.90402 -9.19907 -8.82587 -8.10128 -6.18656 0.95191 1.44269 1.45120 1.57721 1.69581 1.78474 2.46471 2.98291 3.21860 3.49122 3.62232 3.82433 4.00427 4.10992 4.16197 4.23287 4.32371 4.41107 4.43568 4.55334 4.56222 4.61434 4.68601 4.70621 4.77121 4.78106 4.81294 4.89246 4.95501 5.04003 5.07667 5.16377 5.19528 5.27690 5.29453 5.39351 5.46602 5.48972 5.78717 5.81458 6.20405 6.23759 6.54425 6.76340 6.83873 6.98122 7.50093 9.00439 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.013003 B = 0.006583 C = 0.004904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2152.885793 B = 4252.597665 C = 5708.526428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.071 3.929 3 N -0.328 5.328 4 N -0.379 5.379 5 C 0.095 3.905 6 C 0.101 3.899 7 C -0.089 4.089 8 C -0.244 4.244 9 C 0.149 3.851 10 N -0.529 5.529 11 C 0.210 3.790 12 C -0.508 4.508 13 H 0.065 0.935 14 C 0.000 4.000 15 N -0.937 5.937 16 Si 0.961 3.039 17 H -0.258 1.258 18 H -0.284 1.284 19 H -0.283 1.283 20 C 0.088 3.912 21 C -0.153 4.153 22 C -0.189 4.189 23 C -0.154 4.154 24 H 0.083 0.917 25 H 0.084 0.916 26 H 0.075 0.925 27 H 0.087 0.913 28 H 0.093 0.907 29 H 0.106 0.894 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.073 0.927 33 H 0.066 0.934 34 H 0.021 0.979 35 H -0.045 1.045 36 H 0.013 0.987 37 H 0.261 0.739 38 H 0.086 0.914 39 H 0.015 0.985 40 H 0.086 0.914 41 H 0.084 0.916 42 H 0.087 0.913 43 H 0.106 0.894 44 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.922 15.977 -1.515 16.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.094 4.094 3 N -0.152 5.152 4 N -0.162 5.162 5 C -0.045 4.045 6 C -0.028 4.028 7 C -0.147 4.147 8 C -0.255 4.255 9 C 0.021 3.979 10 N -0.253 5.253 11 C 0.084 3.916 12 C -0.547 4.547 13 H 0.083 0.917 14 C -0.197 4.197 15 N -0.578 5.578 16 Si 0.787 3.213 17 H -0.181 1.181 18 H -0.210 1.210 19 H -0.209 1.209 20 C -0.040 4.040 21 C -0.172 4.172 22 C -0.226 4.226 23 C -0.192 4.192 24 H 0.102 0.898 25 H 0.103 0.897 26 H 0.093 0.907 27 H 0.106 0.894 28 H 0.112 0.888 29 H 0.124 0.876 30 H 0.109 0.891 31 H 0.110 0.890 32 H 0.092 0.908 33 H 0.084 0.916 34 H 0.039 0.961 35 H -0.028 1.028 36 H 0.031 0.969 37 H 0.069 0.931 38 H 0.104 0.896 39 H 0.033 0.967 40 H 0.105 0.895 41 H 0.103 0.897 42 H 0.106 0.894 43 H 0.124 0.876 44 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 3.488 17.297 -1.253 17.689 hybrid contribution -0.269 -2.108 -0.458 2.174 sum 3.219 15.189 -1.711 15.620 Atomic orbital electron populations 1.20333 0.85810 1.03625 1.03396 1.22447 0.97655 0.90130 0.99195 1.77130 0.87300 1.22870 1.27856 1.48556 1.05760 1.04347 1.57532 1.22130 0.83189 0.94706 1.04494 1.21126 0.97460 0.84748 0.99432 1.20513 0.92290 0.98031 1.03901 1.19705 0.92306 0.95379 1.18107 1.20007 0.98253 0.90300 0.89354 1.62056 1.43511 1.05137 1.14625 1.19391 0.94815 0.83194 0.94245 1.21516 0.96329 0.91390 1.45450 0.91665 1.25848 0.99842 0.98534 0.95450 1.70104 1.30050 1.07143 1.50513 0.85449 0.79932 0.78491 0.77464 1.18143 1.20980 1.20853 1.21750 0.91541 0.98901 0.91763 1.22188 0.95408 1.05753 0.93863 1.22984 1.00761 0.95573 1.03249 1.23022 1.01783 0.93337 1.01019 0.89831 0.89702 0.90657 0.89443 0.88846 0.87581 0.89124 0.89033 0.90779 0.91592 0.96077 1.02784 0.96894 0.93062 0.89570 0.96716 0.89535 0.89701 0.89416 0.87613 0.87654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.91 9.22 71.24 0.66 -1.25 16 2 C 0.07 2.31 6.28 43.10 0.27 2.58 16 3 N -0.33 -10.59 12.58 -47.39 -0.60 -11.18 16 4 N -0.38 -10.68 4.01 -356.04 -1.43 -12.10 16 5 C 0.09 1.60 11.27 127.77 1.44 3.04 16 6 C 0.10 3.14 6.93 41.41 0.29 3.43 16 7 C -0.09 -2.34 9.72 71.24 0.69 -1.65 16 8 C -0.24 -8.54 5.00 -20.14 -0.10 -8.64 16 9 C 0.15 5.97 4.69 85.56 0.40 6.37 16 10 N -0.53 -23.19 4.37 -905.37 -3.95 -27.14 16 11 C 0.21 11.17 4.59 85.55 0.39 11.56 16 12 C -0.51 -28.37 8.63 25.60 0.22 -28.15 16 13 H 0.07 3.52 7.45 -2.91 -0.02 3.50 16 14 C 0.00 0.03 5.46 84.65 0.46 0.49 16 15 N -0.94 -56.52 13.29 21.45 0.28 -56.24 16 16 Si 0.96 43.87 29.54 68.60 2.03 45.90 16 17 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 18 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 19 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 20 C 0.09 3.35 4.86 86.31 0.42 3.77 16 21 C -0.15 -5.56 4.99 -10.79 -0.05 -5.62 16 22 C -0.19 -6.30 10.01 30.62 0.31 -5.99 16 23 C -0.15 -4.26 10.25 30.62 0.31 -3.95 16 24 H 0.08 2.04 6.85 -2.38 -0.02 2.03 16 25 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 26 H 0.07 1.95 7.25 -2.38 -0.02 1.93 16 27 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.09 1.42 8.14 -2.38 -0.02 1.40 16 29 H 0.11 1.33 7.05 -2.39 -0.02 1.31 16 30 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.09 1.82 7.08 -2.39 -0.02 1.81 16 32 H 0.07 2.43 7.55 -2.39 -0.02 2.42 16 33 H 0.07 2.82 6.99 -2.39 -0.02 2.81 16 34 H 0.02 0.84 7.23 -2.39 -0.02 0.82 16 35 H -0.05 -2.65 7.99 -2.39 -0.02 -2.67 16 36 H 0.01 0.75 6.98 -2.38 -0.02 0.73 16 37 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 38 H 0.09 3.00 3.67 -2.39 -0.01 2.99 16 39 H 0.01 0.57 7.78 -2.38 -0.02 0.55 16 40 H 0.09 3.51 8.14 -2.38 -0.02 3.49 16 41 H 0.08 2.88 8.03 -2.39 -0.02 2.86 16 42 H 0.09 2.90 8.14 -2.39 -0.02 2.88 16 43 H 0.11 2.54 8.14 -2.39 -0.02 2.52 16 44 H 0.11 2.53 8.14 -2.39 -0.02 2.52 16 Total: -1.00 -69.13 352.37 3.02 -66.12 By element: Atomic # 1 Polarization: 17.69 SS G_CDS: 0.97 Total: 18.66 kcal Atomic # 6 Polarization: -29.72 SS G_CDS: 5.71 Total: -24.01 kcal Atomic # 7 Polarization: -100.97 SS G_CDS: -5.69 Total: -106.66 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Total: -69.13 3.02 -66.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176257491.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.601 kcal (2) G-P(sol) polarization free energy of solvation -69.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds