Wall clock time and date at job start Mon Mar 30 2020 01:58:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46900 * 109.46616 * 2 1 4 4 C 1.46895 * 111.00544 * 297.40245 * 3 2 1 5 5 C 1.53006 * 109.47169 * 293.68030 * 4 3 2 6 6 C 1.52999 * 109.47395 * 185.27818 * 5 4 3 7 7 C 1.50693 * 109.47095 * 179.97438 * 6 5 4 8 8 H 1.08004 * 120.00242 * 359.97438 * 7 6 5 9 9 C 1.37878 * 120.00014 * 179.97438 * 7 6 5 10 10 N 1.31518 * 120.00031 * 180.02562 * 9 7 6 11 11 Si 1.86800 * 119.99681 * 0.02562 * 9 7 6 12 12 H 1.48498 * 109.47263 * 90.00346 * 11 9 7 13 13 H 1.48509 * 109.46872 * 209.99744 * 11 9 7 14 14 H 1.48495 * 109.47231 * 329.99641 * 11 9 7 15 15 C 1.46898 * 110.99946 * 61.35948 * 3 2 1 16 16 H 1.09003 * 109.47067 * 296.04390 * 15 3 2 17 17 C 1.52998 * 109.47500 * 176.04418 * 15 3 2 18 18 C 1.50703 * 109.47444 * 56.03779 * 15 3 2 19 19 C 1.38291 * 119.96525 * 40.00367 * 18 15 3 20 20 C 1.38251 * 120.10816 * 179.70072 * 19 18 15 21 21 C 1.38170 * 120.05328 * 0.02562 * 20 19 18 22 22 C 1.38710 * 119.94706 * 0.02562 * 21 20 19 23 23 O 1.35892 * 120.05647 * 180.02562 * 22 21 20 24 24 C 1.38117 * 119.97565 * 219.72576 * 18 15 3 25 25 H 1.09005 * 109.46684 * 185.04211 * 1 2 3 26 26 H 1.09000 * 109.47116 * 305.03638 * 1 2 3 27 27 H 1.09001 * 109.47625 * 65.03983 * 1 2 3 28 28 H 1.08999 * 109.47227 * 240.00788 * 2 1 3 29 29 H 1.08994 * 109.47753 * 120.00232 * 2 1 3 30 30 H 1.08994 * 109.47464 * 53.67973 * 4 3 2 31 31 H 1.09000 * 109.47693 * 173.68183 * 4 3 2 32 32 H 1.09003 * 109.46867 * 305.27609 * 5 4 3 33 33 H 1.08994 * 109.46983 * 65.27472 * 5 4 3 34 34 H 1.08999 * 109.46952 * 300.00236 * 6 5 4 35 35 H 1.09003 * 109.47096 * 59.99844 * 6 5 4 36 36 H 0.97003 * 119.99909 * 180.02562 * 10 9 7 37 37 H 1.08999 * 109.46746 * 299.99597 * 17 15 3 38 38 H 1.08998 * 109.47542 * 59.99251 * 17 15 3 39 39 H 1.09004 * 109.47475 * 180.02562 * 17 15 3 40 40 H 1.07992 * 119.94718 * 359.72597 * 19 18 15 41 41 H 1.07998 * 119.97140 * 180.02562 * 20 19 18 42 42 H 1.08004 * 120.02131 * 180.02562 * 21 20 19 43 43 H 0.96700 * 114.00116 * 90.00184 * 23 22 21 44 44 H 1.07999 * 120.02820 * 0.25843 * 24 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0195 1.3850 0.0000 4 6 1.5999 2.0918 -1.2175 5 6 2.2897 1.4683 -2.4326 6 6 1.9569 2.2849 -3.6829 7 6 2.6367 1.6711 -4.8794 8 1 3.2457 0.7871 -4.7601 9 6 2.4814 2.2379 -6.1267 10 7 3.0743 1.7019 -7.1711 11 14 1.4286 3.7671 -6.3329 12 1 2.2734 4.9764 -6.1623 13 1 0.8245 3.7729 -7.6896 14 1 0.3510 3.7678 -5.3112 15 6 1.5752 2.1004 1.2036 16 1 0.4878 2.1761 1.2007 17 6 2.1840 3.5040 1.2167 18 6 2.0229 1.3472 2.4298 19 6 3.2771 0.7656 2.4635 20 6 3.6932 0.0792 3.5892 21 6 2.8561 -0.0276 4.6833 22 6 1.5972 0.5540 4.6514 23 8 0.7724 0.4507 5.7264 24 6 1.1825 1.2433 3.5209 25 1 -0.3633 -1.0238 0.0903 26 1 -0.3633 0.5900 0.8414 27 1 -0.3634 0.4337 -0.9317 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 0.5191 2.0094 -1.3313 31 1 1.8781 3.1430 -1.1416 32 1 3.3685 1.4661 -2.2766 33 1 1.9395 0.4444 -2.5634 34 1 0.8781 2.2871 -3.8388 35 1 2.3071 3.3088 -3.5519 36 1 2.9653 2.1009 -8.0485 37 1 3.2713 3.4283 1.2197 38 1 1.8602 4.0488 0.3299 39 1 1.8546 4.0347 2.1100 40 1 3.9327 0.8481 1.6094 41 1 4.6732 -0.3738 3.6133 42 1 3.1818 -0.5636 5.5625 43 1 0.8703 1.1677 6.3677 44 1 0.2032 1.6979 3.4941 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178376546.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:02 Heat of formation + Delta-G solvation = -24.207629 kcal Electronic energy + Delta-G solvation = -21656.108948 eV Core-core repulsion = 18573.273979 eV Total energy + Delta-G solvation = -3082.834969 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.27962 -38.58427 -36.63460 -34.01312 -32.71468 -31.62959 -30.52287 -29.62588 -28.36851 -26.58770 -23.84651 -23.49617 -22.60368 -21.71214 -20.14794 -19.30898 -17.90520 -16.70866 -16.51591 -16.35478 -15.66381 -15.37187 -15.12456 -14.43262 -14.13698 -14.10310 -13.72302 -13.19681 -12.92361 -12.68228 -12.54517 -12.37322 -12.24122 -12.06573 -11.89085 -11.63105 -11.49432 -11.43973 -11.20642 -10.88994 -10.71434 -10.54658 -10.45926 -9.83927 -9.60728 -9.56654 -9.14502 -9.00346 -8.66297 -8.50988 -8.07939 -6.01474 -3.98897 1.11715 1.16703 3.31906 3.39170 3.42724 3.46975 3.88253 4.15702 4.47378 4.56625 4.76053 4.97931 5.12243 5.17733 5.22916 5.27963 5.32673 5.36523 5.44484 5.51187 5.59351 5.64041 5.73322 5.73768 5.82540 5.92392 6.00186 6.09843 6.15838 6.23261 6.29777 6.32564 6.35647 6.48644 6.58251 6.66508 6.67751 6.96193 7.28422 7.30697 7.39784 7.42757 7.51458 7.83657 8.58215 9.04463 9.61389 11.12203 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.034807 B = 0.003343 C = 0.003297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.232570 B = 8372.817724 C = 8490.207586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.045 3.955 3 N -0.526 5.526 4 C 0.045 3.955 5 C -0.095 4.095 6 C -0.013 4.013 7 C -0.517 4.517 8 H 0.071 0.929 9 C 0.065 3.935 10 N -0.905 5.905 11 Si 0.880 3.120 12 H -0.277 1.277 13 H -0.289 1.289 14 H -0.266 1.266 15 C 0.114 3.886 16 H 0.050 0.950 17 C -0.143 4.143 18 C -0.053 4.053 19 C -0.100 4.100 20 C -0.108 4.108 21 C -0.151 4.151 22 C 0.098 3.902 23 O -0.501 6.501 24 C -0.143 4.143 25 H 0.057 0.943 26 H 0.051 0.949 27 H 0.061 0.939 28 H 0.083 0.917 29 H 0.072 0.928 30 H 0.033 0.967 31 H 0.074 0.926 32 H 0.061 0.939 33 H 0.052 0.948 34 H 0.012 0.988 35 H 0.010 0.990 36 H 0.262 0.738 37 H 0.067 0.933 38 H 0.065 0.935 39 H 0.055 0.945 40 H 0.138 0.862 41 H 0.126 0.874 42 H 0.124 0.876 43 H 0.387 0.613 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.997 0.264 25.252 25.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.083 4.083 3 N -0.250 5.250 4 C -0.082 4.082 5 C -0.133 4.133 6 C -0.051 4.051 7 C -0.555 4.555 8 H 0.089 0.911 9 C -0.136 4.136 10 N -0.545 5.545 11 Si 0.708 3.292 12 H -0.203 1.203 13 H -0.215 1.215 14 H -0.191 1.191 15 C 0.006 3.994 16 H 0.067 0.933 17 C -0.201 4.201 18 C -0.053 4.053 19 C -0.118 4.118 20 C -0.126 4.126 21 C -0.169 4.169 22 C 0.054 3.946 23 O -0.311 6.311 24 C -0.162 4.162 25 H 0.076 0.924 26 H 0.070 0.930 27 H 0.080 0.920 28 H 0.102 0.898 29 H 0.090 0.910 30 H 0.051 0.949 31 H 0.092 0.908 32 H 0.080 0.920 33 H 0.070 0.930 34 H 0.030 0.970 35 H 0.029 0.971 36 H 0.072 0.928 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.074 0.926 40 H 0.155 0.845 41 H 0.144 0.856 42 H 0.142 0.858 43 H 0.242 0.758 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -2.653 -0.232 24.776 24.919 hybrid contribution -1.361 1.170 0.011 1.795 sum -4.014 0.938 24.788 25.128 Atomic orbital electron populations 1.22392 0.98657 1.02017 1.01913 1.22221 0.92749 0.90375 1.02947 1.62346 1.59257 1.02096 1.01289 1.22445 0.97820 0.98490 0.89402 1.21445 1.00162 0.99149 0.92562 1.19544 0.96445 0.95419 0.93644 1.21152 1.30174 1.13395 0.90772 0.91053 1.25044 0.95460 0.97142 0.95959 1.69923 1.44201 1.40886 0.99457 0.86775 0.81339 0.83837 0.77290 1.20318 1.21482 1.19095 1.20564 0.97376 0.93424 0.88041 0.93254 1.21900 1.02137 0.94303 1.01718 1.19692 0.94068 0.97209 0.94372 1.21205 0.96020 0.96460 0.98116 1.21100 0.99563 0.98962 0.93002 1.21391 0.93396 1.02187 0.99948 1.18382 0.89521 0.98552 0.88177 1.84832 1.61315 1.51819 1.33149 1.21257 1.00311 1.00758 0.93900 0.92424 0.92996 0.92012 0.89845 0.90987 0.94917 0.90798 0.91979 0.92971 0.96971 0.97149 0.92810 0.91428 0.91601 0.92552 0.84461 0.85649 0.85846 0.75772 0.85912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.43 9.23 37.16 0.34 -2.08 16 2 C 0.04 0.60 5.43 -3.82 -0.02 0.58 16 3 N -0.53 -7.23 3.91 -228.04 -0.89 -8.12 16 4 C 0.05 0.72 4.58 -3.82 -0.02 0.70 16 5 C -0.10 -1.87 4.95 -26.73 -0.13 -2.01 16 6 C -0.01 -0.30 4.04 -27.89 -0.11 -0.41 16 7 C -0.52 -14.88 9.66 -34.44 -0.33 -15.21 16 8 H 0.07 2.21 7.99 -52.48 -0.42 1.79 16 9 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 10 N -0.91 -28.24 13.96 55.43 0.77 -27.47 16 11 Si 0.88 21.90 27.47 -169.99 -4.67 17.23 16 12 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 13 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 14 H -0.27 -6.35 6.54 56.52 0.37 -5.98 16 15 C 0.11 1.35 1.80 -68.86 -0.12 1.23 16 16 H 0.05 0.59 6.30 -51.93 -0.33 0.27 16 17 C -0.14 -1.58 8.97 37.16 0.33 -1.24 16 18 C -0.05 -0.59 3.75 -104.65 -0.39 -0.98 16 19 C -0.10 -1.10 8.08 -39.56 -0.32 -1.42 16 20 C -0.11 -1.05 10.04 -39.60 -0.40 -1.45 16 21 C -0.15 -1.45 9.99 -39.43 -0.39 -1.85 16 22 C 0.10 1.01 6.70 -39.22 -0.26 0.74 16 23 O -0.50 -4.56 13.50 -19.40 -0.26 -4.82 16 24 C -0.14 -1.53 9.61 -39.43 -0.38 -1.90 16 25 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.05 0.63 6.27 -51.93 -0.33 0.30 16 27 H 0.06 0.85 6.59 -51.93 -0.34 0.51 16 28 H 0.08 1.22 6.48 -51.93 -0.34 0.88 16 29 H 0.07 0.93 6.08 -51.93 -0.32 0.61 16 30 H 0.03 0.52 6.18 -51.93 -0.32 0.20 16 31 H 0.07 1.15 5.82 -51.93 -0.30 0.85 16 32 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 33 H 0.05 1.04 6.76 -51.93 -0.35 0.69 16 34 H 0.01 0.29 7.20 -51.93 -0.37 -0.09 16 35 H 0.01 0.24 7.57 -51.93 -0.39 -0.15 16 36 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.07 0.75 6.19 -51.93 -0.32 0.43 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.14 1.59 7.71 -52.49 -0.40 1.18 16 41 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 42 H 0.12 0.99 8.06 -52.48 -0.42 0.57 16 43 H 0.39 1.61 9.06 45.56 0.41 2.02 16 44 H 0.12 1.20 8.04 -52.49 -0.42 0.78 16 LS Contribution 343.12 15.07 5.17 5.17 Total: -1.00 -31.89 343.12 -8.43 -40.32 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -6.25 Total: 1.18 kcal Atomic # 6 Polarization: -21.19 SS G_CDS: -2.31 Total: -23.50 kcal Atomic # 7 Polarization: -35.47 SS G_CDS: -0.12 Total: -35.59 kcal Atomic # 8 Polarization: -4.56 SS G_CDS: -0.26 Total: -4.82 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.67 Total: 17.23 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.89 -8.43 -40.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178376546.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.111 kcal (2) G-P(sol) polarization free energy of solvation -31.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds