Wall clock time and date at job start Mon Mar 30 2020 01:58:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46900 * 109.46616 * 2 1 4 4 C 1.46895 * 111.00544 * 297.40245 * 3 2 1 5 5 C 1.53006 * 109.47169 * 293.68030 * 4 3 2 6 6 C 1.52999 * 109.47395 * 185.27818 * 5 4 3 7 7 C 1.50693 * 109.47095 * 179.97438 * 6 5 4 8 8 H 1.08004 * 120.00242 * 359.97438 * 7 6 5 9 9 C 1.37878 * 120.00014 * 179.97438 * 7 6 5 10 10 N 1.31518 * 120.00031 * 180.02562 * 9 7 6 11 11 Si 1.86800 * 119.99681 * 0.02562 * 9 7 6 12 12 H 1.48498 * 109.47263 * 90.00346 * 11 9 7 13 13 H 1.48509 * 109.46872 * 209.99744 * 11 9 7 14 14 H 1.48495 * 109.47231 * 329.99641 * 11 9 7 15 15 C 1.46898 * 110.99946 * 61.35948 * 3 2 1 16 16 H 1.09003 * 109.47067 * 296.04390 * 15 3 2 17 17 C 1.52998 * 109.47500 * 176.04418 * 15 3 2 18 18 C 1.50703 * 109.47444 * 56.03779 * 15 3 2 19 19 C 1.38291 * 119.96525 * 40.00367 * 18 15 3 20 20 C 1.38251 * 120.10816 * 179.70072 * 19 18 15 21 21 C 1.38170 * 120.05328 * 0.02562 * 20 19 18 22 22 C 1.38710 * 119.94706 * 0.02562 * 21 20 19 23 23 O 1.35892 * 120.05647 * 180.02562 * 22 21 20 24 24 C 1.38117 * 119.97565 * 219.72576 * 18 15 3 25 25 H 1.09005 * 109.46684 * 185.04211 * 1 2 3 26 26 H 1.09000 * 109.47116 * 305.03638 * 1 2 3 27 27 H 1.09001 * 109.47625 * 65.03983 * 1 2 3 28 28 H 1.08999 * 109.47227 * 240.00788 * 2 1 3 29 29 H 1.08994 * 109.47753 * 120.00232 * 2 1 3 30 30 H 1.08994 * 109.47464 * 53.67973 * 4 3 2 31 31 H 1.09000 * 109.47693 * 173.68183 * 4 3 2 32 32 H 1.09003 * 109.46867 * 305.27609 * 5 4 3 33 33 H 1.08994 * 109.46983 * 65.27472 * 5 4 3 34 34 H 1.08999 * 109.46952 * 300.00236 * 6 5 4 35 35 H 1.09003 * 109.47096 * 59.99844 * 6 5 4 36 36 H 0.97003 * 119.99909 * 180.02562 * 10 9 7 37 37 H 1.08999 * 109.46746 * 299.99597 * 17 15 3 38 38 H 1.08998 * 109.47542 * 59.99251 * 17 15 3 39 39 H 1.09004 * 109.47475 * 180.02562 * 17 15 3 40 40 H 1.07992 * 119.94718 * 359.72597 * 19 18 15 41 41 H 1.07998 * 119.97140 * 180.02562 * 20 19 18 42 42 H 1.08004 * 120.02131 * 180.02562 * 21 20 19 43 43 H 0.96700 * 114.00116 * 90.00184 * 23 22 21 44 44 H 1.07999 * 120.02820 * 0.25843 * 24 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0195 1.3850 0.0000 4 6 1.5999 2.0918 -1.2175 5 6 2.2897 1.4683 -2.4326 6 6 1.9569 2.2849 -3.6829 7 6 2.6367 1.6711 -4.8794 8 1 3.2457 0.7871 -4.7601 9 6 2.4814 2.2379 -6.1267 10 7 3.0743 1.7019 -7.1711 11 14 1.4286 3.7671 -6.3329 12 1 2.2734 4.9764 -6.1623 13 1 0.8245 3.7729 -7.6896 14 1 0.3510 3.7678 -5.3112 15 6 1.5752 2.1004 1.2036 16 1 0.4878 2.1761 1.2007 17 6 2.1840 3.5040 1.2167 18 6 2.0229 1.3472 2.4298 19 6 3.2771 0.7656 2.4635 20 6 3.6932 0.0792 3.5892 21 6 2.8561 -0.0276 4.6833 22 6 1.5972 0.5540 4.6514 23 8 0.7724 0.4507 5.7264 24 6 1.1825 1.2433 3.5209 25 1 -0.3633 -1.0238 0.0903 26 1 -0.3633 0.5900 0.8414 27 1 -0.3634 0.4337 -0.9317 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 0.5191 2.0094 -1.3313 31 1 1.8781 3.1430 -1.1416 32 1 3.3685 1.4661 -2.2766 33 1 1.9395 0.4444 -2.5634 34 1 0.8781 2.2871 -3.8388 35 1 2.3071 3.3088 -3.5519 36 1 2.9653 2.1009 -8.0485 37 1 3.2713 3.4283 1.2197 38 1 1.8602 4.0488 0.3299 39 1 1.8546 4.0347 2.1100 40 1 3.9327 0.8481 1.6094 41 1 4.6732 -0.3738 3.6133 42 1 3.1818 -0.5636 5.5625 43 1 0.8703 1.1677 6.3677 44 1 0.2032 1.6979 3.4941 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178376546.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:02 Heat of formation + Delta-G solvation = -44.810726 kcal Electronic energy + Delta-G solvation = -21657.002365 eV Core-core repulsion = 18573.273979 eV Total energy + Delta-G solvation = -3083.728386 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.12094 -39.52936 -37.46822 -35.77088 -34.07235 -33.22861 -31.45869 -30.57254 -29.50528 -28.09270 -25.14717 -24.56280 -23.39558 -23.04177 -21.58611 -20.46397 -18.83524 -18.67322 -17.44098 -17.25710 -16.59268 -16.55832 -16.17672 -15.93201 -15.39241 -15.27108 -14.74817 -14.53792 -14.43709 -13.94939 -13.65582 -13.49644 -13.36159 -13.14383 -13.03443 -12.85759 -12.73035 -12.51781 -12.36517 -12.27048 -12.01954 -11.78292 -11.70528 -11.57129 -11.30243 -11.14411 -11.12513 -10.74347 -9.77775 -9.44269 -9.17510 -8.28075 -6.32050 0.35172 0.40413 1.36538 1.38613 1.50683 2.37491 2.70949 2.93114 3.07354 3.36047 3.72948 3.97834 4.06939 4.16046 4.27113 4.29758 4.33653 4.36716 4.45222 4.51274 4.55946 4.63460 4.71487 4.72667 4.84251 4.90030 4.99154 5.02334 5.06535 5.08681 5.11579 5.19296 5.27280 5.38147 5.47281 5.54155 5.56570 5.64269 5.68787 5.69762 5.94984 6.17527 6.26099 6.32899 6.76515 6.88865 7.32455 8.89118 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.034807 B = 0.003343 C = 0.003297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.232570 B = 8372.817724 C = 8490.207586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.047 3.953 3 N -0.530 5.530 4 C 0.058 3.942 5 C -0.085 4.085 6 C -0.009 4.009 7 C -0.531 4.531 8 H 0.028 0.972 9 C 0.001 3.999 10 N -0.954 5.954 11 Si 0.954 3.046 12 H -0.265 1.265 13 H -0.285 1.285 14 H -0.245 1.245 15 C 0.117 3.883 16 H 0.053 0.947 17 C -0.141 4.141 18 C -0.058 4.058 19 C -0.113 4.113 20 C -0.108 4.108 21 C -0.154 4.154 22 C 0.097 3.903 23 O -0.511 6.511 24 C -0.151 4.151 25 H 0.065 0.935 26 H 0.060 0.940 27 H 0.049 0.951 28 H 0.065 0.935 29 H 0.078 0.922 30 H 0.037 0.963 31 H 0.082 0.918 32 H 0.048 0.952 33 H 0.042 0.958 34 H 0.017 0.983 35 H 0.020 0.980 36 H 0.266 0.734 37 H 0.060 0.940 38 H 0.061 0.939 39 H 0.073 0.927 40 H 0.126 0.874 41 H 0.143 0.857 42 H 0.140 0.860 43 H 0.409 0.591 44 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.359 1.636 27.506 27.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.081 4.081 3 N -0.254 5.254 4 C -0.070 4.070 5 C -0.123 4.123 6 C -0.047 4.047 7 C -0.569 4.569 8 H 0.046 0.954 9 C -0.196 4.196 10 N -0.595 5.595 11 Si 0.777 3.223 12 H -0.190 1.190 13 H -0.211 1.211 14 H -0.168 1.168 15 C 0.009 3.991 16 H 0.070 0.930 17 C -0.198 4.198 18 C -0.059 4.059 19 C -0.132 4.132 20 C -0.126 4.126 21 C -0.173 4.173 22 C 0.053 3.947 23 O -0.324 6.324 24 C -0.169 4.169 25 H 0.084 0.916 26 H 0.078 0.922 27 H 0.068 0.932 28 H 0.084 0.916 29 H 0.097 0.903 30 H 0.055 0.945 31 H 0.101 0.899 32 H 0.067 0.933 33 H 0.061 0.939 34 H 0.036 0.964 35 H 0.038 0.962 36 H 0.074 0.926 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.092 0.908 40 H 0.144 0.856 41 H 0.161 0.839 42 H 0.158 0.842 43 H 0.267 0.733 44 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -4.013 1.143 27.072 27.392 hybrid contribution -0.865 0.631 -0.616 1.235 sum -4.877 1.775 26.456 26.960 Atomic orbital electron populations 1.22328 0.97839 1.02655 1.01555 1.22165 0.93371 0.90160 1.02357 1.62257 1.59619 1.02222 1.01305 1.22185 0.97418 0.98647 0.88720 1.21244 0.99720 0.98379 0.92932 1.19482 0.95969 0.95982 0.93224 1.21518 1.29933 1.12350 0.93111 0.95366 1.26074 0.96999 1.01070 0.95410 1.70086 1.46178 1.43060 1.00225 0.85609 0.79839 0.79081 0.77811 1.18986 1.21112 1.16847 1.20586 0.97531 0.93714 0.87267 0.92970 1.21887 1.01665 0.93877 1.02378 1.19609 0.94318 0.97653 0.94287 1.21192 0.96072 0.97471 0.98429 1.21304 1.00378 0.98375 0.92505 1.21616 0.93205 1.01997 1.00446 1.18488 0.89718 0.98095 0.88440 1.84775 1.61154 1.53160 1.33343 1.21338 1.00564 1.01144 0.93901 0.91568 0.92150 0.93203 0.91649 0.90331 0.94507 0.89941 0.93296 0.93916 0.96433 0.96166 0.92551 0.92088 0.91972 0.90830 0.85555 0.83943 0.84169 0.73266 0.85217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.46 9.23 71.98 0.66 -3.80 16 2 C 0.05 1.24 5.43 86.30 0.47 1.71 16 3 N -0.53 -14.11 3.91 -875.40 -3.42 -17.53 16 4 C 0.06 1.77 4.58 86.31 0.40 2.16 16 5 C -0.08 -3.35 4.95 30.60 0.15 -3.20 16 6 C -0.01 -0.41 4.04 29.85 0.12 -0.29 16 7 C -0.53 -31.35 9.66 25.60 0.25 -31.10 16 8 H 0.03 1.84 7.99 -2.91 -0.02 1.82 16 9 C 0.00 0.04 5.47 84.65 0.46 0.50 16 10 N -0.95 -61.07 13.96 21.45 0.30 -60.77 16 11 Si 0.95 44.68 27.47 68.60 1.88 46.56 16 12 H -0.26 -11.84 7.11 99.48 0.71 -11.14 16 13 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 14 H -0.25 -10.57 6.54 99.48 0.65 -9.92 16 15 C 0.12 2.58 1.80 44.17 0.08 2.66 16 16 H 0.05 1.14 6.30 -2.39 -0.02 1.12 16 17 C -0.14 -2.84 8.97 71.98 0.65 -2.19 16 18 C -0.06 -1.21 3.75 -19.88 -0.07 -1.28 16 19 C -0.11 -2.37 8.08 22.29 0.18 -2.19 16 20 C -0.11 -1.91 10.04 22.26 0.22 -1.68 16 21 C -0.15 -2.63 9.99 22.37 0.22 -2.40 16 22 C 0.10 1.77 6.70 22.51 0.15 1.92 16 23 O -0.51 -8.01 13.50 -92.33 -1.25 -9.25 16 24 C -0.15 -2.89 9.61 22.36 0.21 -2.68 16 25 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 26 H 0.06 1.35 6.27 -2.39 -0.01 1.33 16 27 H 0.05 1.31 6.59 -2.39 -0.02 1.30 16 28 H 0.07 1.94 6.48 -2.39 -0.02 1.92 16 29 H 0.08 1.97 6.08 -2.39 -0.01 1.95 16 30 H 0.04 1.11 6.18 -2.39 -0.01 1.10 16 31 H 0.08 2.41 5.82 -2.39 -0.01 2.39 16 32 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.04 1.74 6.76 -2.39 -0.02 1.73 16 34 H 0.02 0.81 7.20 -2.39 -0.02 0.79 16 35 H 0.02 0.91 7.57 -2.39 -0.02 0.89 16 36 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 37 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.06 1.29 6.19 -2.39 -0.01 1.28 16 39 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 40 H 0.13 2.88 7.71 -2.91 -0.02 2.86 16 41 H 0.14 1.94 8.06 -2.91 -0.02 1.92 16 42 H 0.14 1.86 8.06 -2.91 -0.02 1.84 16 43 H 0.41 2.30 9.06 -74.06 -0.67 1.63 16 44 H 0.13 2.25 8.04 -2.91 -0.02 2.22 16 Total: -1.00 -69.19 343.12 1.92 -67.26 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: 0.26 Total: 15.59 kcal Atomic # 6 Polarization: -46.02 SS G_CDS: 4.15 Total: -41.87 kcal Atomic # 7 Polarization: -75.17 SS G_CDS: -3.12 Total: -78.30 kcal Atomic # 8 Polarization: -8.01 SS G_CDS: -1.25 Total: -9.25 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 1.88 Total: 46.56 kcal Total: -69.19 1.92 -67.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178376546.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.453 kcal (2) G-P(sol) polarization free energy of solvation -69.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds