Wall clock time and date at job start Mon Mar 30 2020 02:10:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42901 * 109.47046 * 2 1 4 4 C 1.35905 * 116.99604 * 179.97438 * 3 2 1 5 5 C 1.38751 * 120.05870 * 0.02562 * 4 3 2 6 6 C 1.38121 * 119.94246 * 180.02562 * 5 4 3 7 7 C 1.38283 * 120.05809 * 359.97438 * 6 5 4 8 8 C 1.38245 * 120.11012 * 0.04403 * 7 6 5 9 9 C 1.50703 * 119.97092 * 179.97438 * 8 7 6 10 10 H 1.08996 * 109.47118 * 159.99769 * 9 8 7 11 11 C 1.52995 * 109.47164 * 280.00202 * 9 8 7 12 12 N 1.46902 * 109.46935 * 40.00435 * 9 8 7 13 13 C 1.46897 * 111.00273 * 155.00010 * 12 9 8 14 14 C 1.52995 * 109.47583 * 179.97438 * 13 12 9 15 15 C 1.53000 * 109.47187 * 180.02562 * 14 13 12 16 16 C 1.50702 * 109.46929 * 180.02562 * 15 14 13 17 17 H 1.08000 * 120.00118 * 359.97438 * 16 15 14 18 18 C 1.37875 * 120.00141 * 179.97438 * 16 15 14 19 19 N 1.31518 * 119.99567 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00177 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47194 * 90.00379 * 20 18 16 22 22 H 1.48500 * 109.47114 * 210.00252 * 20 18 16 23 23 H 1.48496 * 109.47280 * 329.99878 * 20 18 16 24 24 C 1.38163 * 120.05744 * 359.68064 * 8 7 6 25 25 H 1.09007 * 109.46935 * 60.00317 * 1 2 3 26 26 H 1.09003 * 109.46954 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47592 * 300.00144 * 1 2 3 28 28 H 1.08996 * 109.47090 * 239.99784 * 2 1 3 29 29 H 1.08999 * 109.47084 * 119.99957 * 2 1 3 30 30 H 1.08002 * 120.02961 * 0.02562 * 5 4 3 31 31 H 1.08007 * 119.96925 * 180.02562 * 6 5 4 32 32 H 1.08001 * 119.94744 * 180.02562 * 7 6 5 33 33 H 1.08994 * 109.47473 * 299.99894 * 11 9 8 34 34 H 1.09002 * 109.47519 * 60.00220 * 11 9 8 35 35 H 1.09008 * 109.46946 * 179.97438 * 11 9 8 36 36 H 1.00903 * 110.99529 * 278.94810 * 12 9 8 37 37 H 1.09006 * 109.46711 * 299.99919 * 13 12 9 38 38 H 1.09005 * 109.47225 * 59.99432 * 13 12 9 39 39 H 1.08999 * 109.46947 * 300.00040 * 14 13 12 40 40 H 1.09005 * 109.47084 * 59.99615 * 14 13 12 41 41 H 1.08995 * 109.46786 * 299.99635 * 15 14 13 42 42 H 1.08991 * 109.47375 * 60.00030 * 15 14 13 43 43 H 0.97006 * 119.99877 * 179.97438 * 19 18 16 44 44 H 1.07998 * 120.02998 * 180.29532 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3536 1.5253 0.0005 5 6 4.1999 0.4257 0.0005 6 6 5.5689 0.6094 0.0016 7 6 6.0962 1.8878 0.0022 8 6 5.2551 2.9849 0.0026 9 6 5.8332 4.3767 0.0038 10 1 5.0809 5.0828 -0.3476 11 6 6.2596 4.7506 1.4247 12 7 7.0011 4.4225 -0.8860 13 6 7.2322 5.7859 -1.3818 14 6 8.4541 5.7937 -2.3024 15 6 8.6950 7.2139 -2.8181 16 6 9.8983 7.2214 -3.7255 17 1 10.4374 6.3050 -3.9150 18 6 10.3108 8.3981 -4.3137 19 7 9.6545 9.5141 -4.0826 20 14 11.8018 8.4073 -5.4390 21 1 11.3691 8.1506 -6.8361 22 1 12.4709 9.7308 -5.3632 23 1 12.7507 7.3479 -5.0120 24 6 3.8850 2.8066 -0.0043 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.7886 -0.5729 -0.0003 31 1 6.2280 -0.2462 0.0012 32 1 7.1669 2.0293 0.0026 33 1 5.3930 4.7166 2.0850 34 1 7.0119 4.0444 1.7761 35 1 6.6781 5.7571 1.4255 36 1 7.8223 4.0619 -0.4236 37 1 6.3567 6.1240 -1.9363 38 1 7.4085 6.4540 -0.5387 39 1 9.3292 5.4557 -1.7475 40 1 8.2781 5.1255 -3.1454 41 1 7.8200 7.5522 -3.3730 42 1 8.8712 7.8816 -1.9750 43 1 9.9449 10.3422 -4.4961 44 1 3.2284 3.6640 -0.0088 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178644795.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:23 Heat of formation + Delta-G solvation = -37.970662 kcal Electronic energy + Delta-G solvation = -20497.367047 eV Core-core repulsion = 17413.935269 eV Total energy + Delta-G solvation = -3083.431779 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.32657 -38.40350 -36.44495 -33.94315 -32.26158 -32.21260 -30.50148 -29.43741 -28.67701 -25.90790 -24.50320 -23.02139 -22.75299 -21.93630 -20.53302 -19.97548 -17.90991 -16.35672 -16.34833 -16.22130 -15.92599 -15.29708 -14.76126 -14.62981 -14.30479 -13.72315 -13.69399 -13.46880 -13.28446 -12.97891 -12.89008 -12.47689 -12.17886 -12.13411 -11.89576 -11.74690 -11.44089 -11.31479 -11.24487 -10.93379 -10.81821 -10.74524 -10.54455 -10.45613 -9.66961 -9.32296 -9.04231 -8.86466 -8.31363 -8.23462 -8.13881 -5.96611 -3.98476 1.26887 1.43109 2.97604 3.34569 3.40418 3.44052 3.70224 4.39011 4.50815 4.57581 4.60036 4.71697 4.82104 4.87174 5.02241 5.03894 5.18480 5.23639 5.35287 5.39152 5.42776 5.45470 5.48480 5.67215 5.68441 5.80697 5.88709 5.91522 5.97448 6.09541 6.22642 6.35993 6.41165 6.54829 6.72028 6.76191 6.83244 7.17248 7.29781 7.37054 7.63968 7.72196 7.87436 8.04106 8.47433 9.08767 9.65280 11.14831 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.031114 B = 0.002472 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.689346 B =11326.378867 C =11376.498740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.055 3.945 3 O -0.319 6.319 4 C 0.126 3.874 5 C -0.216 4.216 6 C -0.083 4.083 7 C -0.134 4.134 8 C -0.021 4.021 9 C 0.118 3.882 10 H 0.087 0.913 11 C -0.177 4.177 12 N -0.682 5.682 13 C 0.059 3.941 14 C -0.107 4.107 15 C 0.022 3.978 16 C -0.518 4.518 17 H 0.055 0.945 18 C 0.055 3.945 19 N -0.897 5.897 20 Si 0.892 3.108 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.274 1.274 24 C -0.149 4.149 25 H 0.066 0.934 26 H 0.077 0.923 27 H 0.065 0.935 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.122 0.878 31 H 0.122 0.878 32 H 0.124 0.876 33 H 0.060 0.940 34 H 0.058 0.942 35 H 0.062 0.938 36 H 0.338 0.662 37 H 0.067 0.933 38 H 0.026 0.974 39 H 0.044 0.956 40 H 0.056 0.944 41 H 0.016 0.984 42 H 0.014 0.986 43 H 0.260 0.740 44 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.109 -19.282 12.386 27.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.233 6.233 4 C 0.081 3.919 5 C -0.235 4.235 6 C -0.101 4.101 7 C -0.152 4.152 8 C -0.022 4.022 9 C 0.008 3.992 10 H 0.105 0.895 11 C -0.236 4.236 12 N -0.312 5.312 13 C -0.069 4.069 14 C -0.145 4.145 15 C -0.016 4.016 16 C -0.556 4.556 17 H 0.073 0.927 18 C -0.146 4.146 19 N -0.536 5.536 20 Si 0.720 3.280 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.199 1.199 24 C -0.168 4.168 25 H 0.085 0.915 26 H 0.095 0.905 27 H 0.084 0.916 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.140 0.860 31 H 0.140 0.860 32 H 0.142 0.858 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.156 0.844 37 H 0.086 0.914 38 H 0.044 0.956 39 H 0.063 0.937 40 H 0.075 0.925 41 H 0.034 0.966 42 H 0.032 0.968 43 H 0.069 0.931 44 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -15.619 -19.135 11.777 27.365 hybrid contribution 1.239 0.257 0.109 1.270 sum -14.380 -18.878 11.886 26.542 Atomic orbital electron populations 1.21777 0.92841 1.02755 1.03570 1.22741 0.95768 0.82205 1.01281 1.86060 1.19296 1.29046 1.88885 1.18885 0.82009 0.94069 0.96905 1.21152 0.94498 0.97671 1.10183 1.20913 0.94187 0.97305 0.97672 1.20850 1.00058 0.91608 1.02693 1.19632 0.91880 0.95375 0.95320 1.20468 0.94409 0.92758 0.91567 0.89476 1.22472 1.01938 1.02007 0.97139 1.60650 1.06401 1.24185 1.39986 1.22167 1.00227 0.86887 0.97604 1.21621 0.94192 1.01048 0.97623 1.19064 0.96723 0.89941 0.95842 1.21261 1.12461 0.94204 1.27689 0.92681 1.25039 0.97043 0.95713 0.96823 1.69972 1.40247 0.99070 1.44332 0.86590 0.83003 0.77235 0.81148 1.20668 1.21288 1.19906 1.20237 0.94609 0.94789 1.07200 0.91462 0.90463 0.91551 0.92109 0.92211 0.85985 0.86008 0.85815 0.92067 0.92256 0.91869 0.84361 0.91426 0.95573 0.93679 0.92545 0.96585 0.96806 0.93068 0.85470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 10.28 37.16 0.38 -0.50 16 2 C 0.06 0.42 5.46 37.16 0.20 0.63 16 3 O -0.32 -3.60 10.14 -19.44 -0.20 -3.79 16 4 C 0.13 1.51 6.69 -39.22 -0.26 1.25 16 5 C -0.22 -2.30 9.04 -39.43 -0.36 -2.66 16 6 C -0.08 -0.88 10.04 -39.61 -0.40 -1.28 16 7 C -0.13 -1.58 9.32 -39.56 -0.37 -1.95 16 8 C -0.02 -0.27 4.95 -104.64 -0.52 -0.79 16 9 C 0.12 1.50 2.79 -68.86 -0.19 1.31 16 10 H 0.09 1.13 7.66 -51.93 -0.40 0.74 16 11 C -0.18 -1.95 9.14 37.15 0.34 -1.61 16 12 N -0.68 -9.96 5.70 -107.95 -0.62 -10.58 16 13 C 0.06 1.03 5.48 -3.83 -0.02 1.01 16 14 C -0.11 -2.24 5.41 -26.73 -0.14 -2.38 16 15 C 0.02 0.57 4.97 -27.88 -0.14 0.44 16 16 C -0.52 -14.94 9.11 -34.44 -0.31 -15.25 16 17 H 0.05 1.55 7.74 -52.49 -0.41 1.14 16 18 C 0.05 1.59 5.46 -17.82 -0.10 1.50 16 19 N -0.90 -27.34 13.29 55.43 0.74 -26.61 16 20 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 21 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 23 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 24 C -0.15 -1.87 9.61 -39.43 -0.38 -2.25 16 25 H 0.07 0.42 8.14 -51.92 -0.42 -0.01 16 26 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.42 7.66 -51.93 -0.40 0.02 16 29 H 0.06 0.39 7.66 -51.93 -0.40 -0.01 16 30 H 0.12 1.02 6.30 -52.49 -0.33 0.69 16 31 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 32 H 0.12 1.37 7.24 -52.49 -0.38 0.99 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 35 H 0.06 0.73 7.45 -51.92 -0.39 0.34 16 36 H 0.34 4.57 7.82 -39.29 -0.31 4.26 16 37 H 0.07 1.21 8.06 -51.93 -0.42 0.79 16 38 H 0.03 0.45 7.44 -51.93 -0.39 0.06 16 39 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 40 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 41 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 43 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 44 H 0.13 1.48 8.03 -52.49 -0.42 1.06 16 LS Contribution 360.43 15.07 5.43 5.43 Total: -1.00 -31.53 360.43 -9.52 -41.05 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -7.59 Total: 0.07 kcal Atomic # 6 Polarization: -20.28 SS G_CDS: -2.27 Total: -22.54 kcal Atomic # 7 Polarization: -37.31 SS G_CDS: 0.12 Total: -37.19 kcal Atomic # 8 Polarization: -3.60 SS G_CDS: -0.20 Total: -3.79 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.53 -9.52 -41.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178644795.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.079 kcal (2) G-P(sol) polarization free energy of solvation -31.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds