Wall clock time and date at job start Mon Mar 30 2020 02:10:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42901 * 109.47046 * 2 1 4 4 C 1.35905 * 116.99604 * 179.97438 * 3 2 1 5 5 C 1.38751 * 120.05870 * 0.02562 * 4 3 2 6 6 C 1.38121 * 119.94246 * 180.02562 * 5 4 3 7 7 C 1.38283 * 120.05809 * 359.97438 * 6 5 4 8 8 C 1.38245 * 120.11012 * 0.04403 * 7 6 5 9 9 C 1.50703 * 119.97092 * 179.97438 * 8 7 6 10 10 H 1.08996 * 109.47118 * 159.99769 * 9 8 7 11 11 C 1.52995 * 109.47164 * 280.00202 * 9 8 7 12 12 N 1.46902 * 109.46935 * 40.00435 * 9 8 7 13 13 C 1.46897 * 111.00273 * 155.00010 * 12 9 8 14 14 C 1.52995 * 109.47583 * 179.97438 * 13 12 9 15 15 C 1.53000 * 109.47187 * 180.02562 * 14 13 12 16 16 C 1.50702 * 109.46929 * 180.02562 * 15 14 13 17 17 H 1.08000 * 120.00118 * 359.97438 * 16 15 14 18 18 C 1.37875 * 120.00141 * 179.97438 * 16 15 14 19 19 N 1.31518 * 119.99567 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00177 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47194 * 90.00379 * 20 18 16 22 22 H 1.48500 * 109.47114 * 210.00252 * 20 18 16 23 23 H 1.48496 * 109.47280 * 329.99878 * 20 18 16 24 24 C 1.38163 * 120.05744 * 359.68064 * 8 7 6 25 25 H 1.09007 * 109.46935 * 60.00317 * 1 2 3 26 26 H 1.09003 * 109.46954 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47592 * 300.00144 * 1 2 3 28 28 H 1.08996 * 109.47090 * 239.99784 * 2 1 3 29 29 H 1.08999 * 109.47084 * 119.99957 * 2 1 3 30 30 H 1.08002 * 120.02961 * 0.02562 * 5 4 3 31 31 H 1.08007 * 119.96925 * 180.02562 * 6 5 4 32 32 H 1.08001 * 119.94744 * 180.02562 * 7 6 5 33 33 H 1.08994 * 109.47473 * 299.99894 * 11 9 8 34 34 H 1.09002 * 109.47519 * 60.00220 * 11 9 8 35 35 H 1.09008 * 109.46946 * 179.97438 * 11 9 8 36 36 H 1.00903 * 110.99529 * 278.94810 * 12 9 8 37 37 H 1.09006 * 109.46711 * 299.99919 * 13 12 9 38 38 H 1.09005 * 109.47225 * 59.99432 * 13 12 9 39 39 H 1.08999 * 109.46947 * 300.00040 * 14 13 12 40 40 H 1.09005 * 109.47084 * 59.99615 * 14 13 12 41 41 H 1.08995 * 109.46786 * 299.99635 * 15 14 13 42 42 H 1.08991 * 109.47375 * 60.00030 * 15 14 13 43 43 H 0.97006 * 119.99877 * 179.97438 * 19 18 16 44 44 H 1.07998 * 120.02998 * 180.29532 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3536 1.5253 0.0005 5 6 4.1999 0.4257 0.0005 6 6 5.5689 0.6094 0.0016 7 6 6.0962 1.8878 0.0022 8 6 5.2551 2.9849 0.0026 9 6 5.8332 4.3767 0.0038 10 1 5.0809 5.0828 -0.3476 11 6 6.2596 4.7506 1.4247 12 7 7.0011 4.4225 -0.8860 13 6 7.2322 5.7859 -1.3818 14 6 8.4541 5.7937 -2.3024 15 6 8.6950 7.2139 -2.8181 16 6 9.8983 7.2214 -3.7255 17 1 10.4374 6.3050 -3.9150 18 6 10.3108 8.3981 -4.3137 19 7 9.6545 9.5141 -4.0826 20 14 11.8018 8.4073 -5.4390 21 1 11.3691 8.1506 -6.8361 22 1 12.4709 9.7308 -5.3632 23 1 12.7507 7.3479 -5.0120 24 6 3.8850 2.8066 -0.0043 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.7886 -0.5729 -0.0003 31 1 6.2280 -0.2462 0.0012 32 1 7.1669 2.0293 0.0026 33 1 5.3930 4.7166 2.0850 34 1 7.0119 4.0444 1.7761 35 1 6.6781 5.7571 1.4255 36 1 7.8223 4.0619 -0.4236 37 1 6.3567 6.1240 -1.9363 38 1 7.4085 6.4540 -0.5387 39 1 9.3292 5.4557 -1.7475 40 1 8.2781 5.1255 -3.1454 41 1 7.8200 7.5522 -3.3730 42 1 8.8712 7.8816 -1.9750 43 1 9.9449 10.3422 -4.4961 44 1 3.2284 3.6640 -0.0088 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178644795.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:23 Heat of formation + Delta-G solvation = -55.856364 kcal Electronic energy + Delta-G solvation = -20498.142630 eV Core-core repulsion = 17413.935269 eV Total energy + Delta-G solvation = -3084.207361 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.15528 -39.33171 -37.58951 -35.74557 -33.93204 -32.86943 -31.77869 -30.43153 -29.72570 -27.67781 -25.36128 -24.43428 -23.60816 -23.09460 -21.98903 -21.15902 -18.79035 -18.46588 -17.04445 -17.01558 -16.94157 -16.54342 -16.50082 -15.94972 -15.51597 -14.88000 -14.59410 -14.38241 -14.29309 -14.22464 -13.82066 -13.67746 -13.44186 -13.31862 -13.06798 -12.83170 -12.68977 -12.59361 -12.45518 -12.41341 -12.16182 -12.10755 -11.60421 -11.59506 -11.52528 -11.35823 -11.07662 -10.54719 -9.78111 -9.32998 -9.08893 -8.19526 -6.30423 0.39745 0.55652 1.40305 1.42010 1.53088 2.26404 2.41559 2.81558 3.13442 3.27975 3.79285 3.90990 4.06297 4.07763 4.13788 4.21917 4.24853 4.30722 4.38677 4.44279 4.47872 4.53023 4.63278 4.72350 4.78308 4.84488 4.94344 4.95400 5.02506 5.09913 5.13543 5.20220 5.21323 5.26035 5.39294 5.52646 5.55526 5.67361 5.76837 5.87043 5.88772 6.09895 6.28144 6.49922 6.51658 6.86628 7.38616 8.92368 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.031114 B = 0.002472 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.689346 B =11326.378867 C =11376.498740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.046 3.954 3 O -0.337 6.337 4 C 0.116 3.884 5 C -0.216 4.216 6 C -0.083 4.083 7 C -0.146 4.146 8 C -0.031 4.031 9 C 0.120 3.880 10 H 0.078 0.922 11 C -0.170 4.170 12 N -0.682 5.682 13 C 0.074 3.926 14 C -0.092 4.092 15 C 0.025 3.975 16 C -0.542 4.542 17 H 0.060 0.940 18 C -0.004 4.004 19 N -0.934 5.934 20 Si 0.967 3.033 21 H -0.273 1.273 22 H -0.281 1.281 23 H -0.263 1.263 24 C -0.168 4.168 25 H 0.059 0.941 26 H 0.101 0.899 27 H 0.062 0.938 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.146 0.854 31 H 0.148 0.852 32 H 0.130 0.870 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.056 0.944 36 H 0.347 0.653 37 H 0.058 0.942 38 H 0.028 0.972 39 H 0.053 0.947 40 H 0.050 0.950 41 H -0.011 1.011 42 H -0.008 1.008 43 H 0.263 0.737 44 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.618 -21.450 12.610 28.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.029 4.029 3 O -0.252 6.252 4 C 0.071 3.929 5 C -0.234 4.234 6 C -0.101 4.101 7 C -0.164 4.164 8 C -0.032 4.032 9 C 0.011 3.989 10 H 0.097 0.903 11 C -0.229 4.229 12 N -0.313 5.313 13 C -0.055 4.055 14 C -0.130 4.130 15 C -0.013 4.013 16 C -0.580 4.580 17 H 0.078 0.922 18 C -0.201 4.201 19 N -0.574 5.574 20 Si 0.791 3.209 21 H -0.198 1.198 22 H -0.207 1.207 23 H -0.187 1.187 24 C -0.187 4.187 25 H 0.078 0.922 26 H 0.119 0.881 27 H 0.081 0.919 28 H 0.087 0.913 29 H 0.091 0.909 30 H 0.164 0.836 31 H 0.165 0.835 32 H 0.148 0.852 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.075 0.925 36 H 0.166 0.834 37 H 0.076 0.924 38 H 0.047 0.953 39 H 0.071 0.929 40 H 0.069 0.931 41 H 0.008 0.992 42 H 0.011 0.989 43 H 0.072 0.928 44 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -15.139 -21.327 12.015 28.782 hybrid contribution 0.999 0.881 0.062 1.333 sum -14.140 -20.446 12.077 27.638 Atomic orbital electron populations 1.21813 0.91651 1.04174 1.03059 1.23044 0.96784 0.80814 1.02240 1.86048 1.18980 1.31345 1.88814 1.19047 0.82667 0.94280 0.96933 1.21449 0.94457 0.98416 1.09125 1.21238 0.94643 0.97667 0.96506 1.21022 1.00332 0.92011 1.03066 1.19599 0.92049 0.95277 0.96276 1.20444 0.93282 0.93163 0.92045 0.90337 1.22395 1.02531 1.01767 0.96172 1.60539 1.07445 1.22122 1.41209 1.21843 0.98074 0.88657 0.96940 1.21365 0.96207 0.97293 0.98104 1.18971 0.95027 0.92720 0.94562 1.21705 1.13357 0.94612 1.28328 0.92213 1.26018 1.00382 0.95242 0.98471 1.70105 1.42060 0.99796 1.45473 0.85424 0.78961 0.77653 0.78875 1.19834 1.20684 1.18670 1.20346 0.94794 0.95392 1.08215 0.92166 0.88054 0.91872 0.91334 0.90928 0.83607 0.83462 0.85242 0.91105 0.91350 0.92483 0.83422 0.92354 0.95338 0.92861 0.93091 0.99223 0.98933 0.92796 0.85730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 10.28 71.98 0.74 -0.78 16 2 C 0.05 0.62 5.46 71.98 0.39 1.01 16 3 O -0.34 -7.37 10.14 -92.48 -0.94 -8.31 16 4 C 0.12 2.68 6.69 22.51 0.15 2.83 16 5 C -0.22 -4.16 9.04 22.36 0.20 -3.96 16 6 C -0.08 -1.58 10.04 22.25 0.22 -1.35 16 7 C -0.15 -3.24 9.32 22.28 0.21 -3.03 16 8 C -0.03 -0.76 4.95 -19.88 -0.10 -0.86 16 9 C 0.12 3.01 2.79 44.17 0.12 3.13 16 10 H 0.08 2.08 7.66 -2.39 -0.02 2.06 16 11 C -0.17 -3.59 9.14 71.98 0.66 -2.93 16 12 N -0.68 -19.51 5.70 -495.45 -2.83 -22.33 16 13 C 0.07 2.57 5.48 86.30 0.47 3.04 16 14 C -0.09 -3.86 5.41 30.59 0.17 -3.69 16 15 C 0.02 1.34 4.97 29.85 0.15 1.49 16 16 C -0.54 -31.57 9.11 25.60 0.23 -31.34 16 17 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 18 C 0.00 -0.22 5.46 84.65 0.46 0.25 16 19 N -0.93 -57.83 13.29 21.45 0.28 -57.55 16 20 Si 0.97 45.00 29.54 68.60 2.03 47.02 16 21 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 22 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 23 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 24 C -0.17 -4.20 9.61 22.37 0.21 -3.98 16 25 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 26 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 27 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.07 0.82 7.66 -2.39 -0.02 0.80 16 29 H 0.07 0.79 7.66 -2.39 -0.02 0.77 16 30 H 0.15 2.01 6.30 -2.91 -0.02 1.99 16 31 H 0.15 1.99 8.06 -2.91 -0.02 1.97 16 32 H 0.13 2.65 7.24 -2.91 -0.02 2.63 16 33 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.07 1.32 8.13 -2.39 -0.02 1.30 16 35 H 0.06 1.27 7.45 -2.38 -0.02 1.25 16 36 H 0.35 8.93 7.82 -89.69 -0.70 8.23 16 37 H 0.06 2.13 8.06 -2.38 -0.02 2.11 16 38 H 0.03 0.98 7.44 -2.38 -0.02 0.96 16 39 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 40 H 0.05 2.19 8.14 -2.38 -0.02 2.17 16 41 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 42 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 43 H 0.26 15.27 8.31 -92.70 -0.77 14.50 16 44 H 0.12 3.01 8.03 -2.91 -0.02 2.99 16 Total: -1.00 -67.80 360.43 3.10 -64.69 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: 0.26 Total: 16.65 kcal Atomic # 6 Polarization: -44.47 SS G_CDS: 4.30 Total: -40.18 kcal Atomic # 7 Polarization: -77.34 SS G_CDS: -2.54 Total: -79.88 kcal Atomic # 8 Polarization: -7.37 SS G_CDS: -0.94 Total: -8.31 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.02 kcal Total: -67.80 3.10 -64.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178644795.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.838 kcal (2) G-P(sol) polarization free energy of solvation -67.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds