Wall clock time and date at job start Mon Mar 30 2020 02:10:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42901 * 109.47146 * 2 1 4 4 C 1.35903 * 117.00073 * 180.02562 * 3 2 1 5 5 C 1.38752 * 120.05202 * 0.02562 * 4 3 2 6 6 C 1.38125 * 119.94174 * 179.97438 * 5 4 3 7 7 C 1.38285 * 120.05713 * 359.73841 * 6 5 4 8 8 C 1.38247 * 120.10723 * 0.51476 * 7 6 5 9 9 C 1.50703 * 119.96984 * 179.76626 * 8 7 6 10 10 H 1.08999 * 109.47040 * 199.72872 * 9 8 7 11 11 C 1.52997 * 109.47440 * 79.72505 * 9 8 7 12 12 N 1.46906 * 109.46953 * 319.72411 * 9 8 7 13 13 C 1.46902 * 110.99573 * 205.00087 * 12 9 8 14 14 C 1.53008 * 109.46622 * 179.97438 * 13 12 9 15 15 C 1.53004 * 109.46689 * 180.02562 * 14 13 12 16 16 C 1.50697 * 109.46812 * 180.02562 * 15 14 13 17 17 H 1.08003 * 120.00063 * 359.97438 * 16 15 14 18 18 C 1.37882 * 120.00212 * 179.97438 * 16 15 14 19 19 N 1.31510 * 120.00189 * 179.97438 * 18 16 15 20 20 Si 1.86803 * 119.99712 * 359.97438 * 18 16 15 21 21 H 1.48495 * 109.47426 * 89.99638 * 20 18 16 22 22 H 1.48501 * 109.47045 * 210.00047 * 20 18 16 23 23 H 1.48507 * 109.46759 * 330.00040 * 20 18 16 24 24 C 1.38166 * 120.05823 * 359.48775 * 8 7 6 25 25 H 1.09001 * 109.46649 * 300.00434 * 1 2 3 26 26 H 1.09000 * 109.47083 * 60.00022 * 1 2 3 27 27 H 1.08994 * 109.47298 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46785 * 240.00102 * 2 1 3 29 29 H 1.09000 * 109.47083 * 119.99978 * 2 1 3 30 30 H 1.07997 * 120.02836 * 359.97438 * 5 4 3 31 31 H 1.08004 * 119.97053 * 180.02562 * 6 5 4 32 32 H 1.07994 * 119.94708 * 180.28191 * 7 6 5 33 33 H 1.09002 * 109.46897 * 59.99415 * 11 9 8 34 34 H 1.08994 * 109.47330 * 180.02562 * 11 9 8 35 35 H 1.09005 * 109.46664 * 300.00064 * 11 9 8 36 36 H 1.00896 * 111.00309 * 81.04499 * 12 9 8 37 37 H 1.08990 * 109.47358 * 299.99539 * 13 12 9 38 38 H 1.09004 * 109.47457 * 60.00221 * 13 12 9 39 39 H 1.09006 * 109.47203 * 299.99590 * 14 13 12 40 40 H 1.08995 * 109.47152 * 60.00028 * 14 13 12 41 41 H 1.09006 * 109.46807 * 299.99641 * 15 14 13 42 42 H 1.08995 * 109.47458 * 60.00024 * 15 14 13 43 43 H 0.96997 * 120.00150 * 179.97438 * 19 18 16 44 44 H 1.07994 * 120.02688 * 180.27470 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3537 1.5254 -0.0005 5 6 4.1999 0.4258 -0.0016 6 6 5.5689 0.6094 -0.0027 7 6 6.0963 1.8877 -0.0082 8 6 5.2552 2.9849 -0.0019 9 6 5.8333 4.3766 -0.0025 10 1 5.0812 5.0826 0.3495 11 6 6.2590 4.7514 -1.4235 12 7 7.0017 4.4220 0.8867 13 6 7.2329 5.7851 1.3831 14 6 8.4546 5.7921 2.3042 15 6 8.6950 7.2118 2.8216 16 6 9.8986 7.2188 3.7284 17 1 10.4379 6.3023 3.9170 18 6 10.3115 8.3952 4.3171 19 7 11.3616 8.4012 5.1088 20 14 9.3791 9.9806 3.9902 21 1 8.3048 10.1409 5.0027 22 1 10.3142 11.1311 4.0742 23 1 8.7771 9.9300 2.6335 24 6 3.8851 2.8066 -0.0007 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.7886 -0.5728 -0.0016 31 1 6.2281 -0.2462 -0.0039 32 1 7.1669 2.0292 -0.0136 33 1 5.3921 4.7177 -2.0833 34 1 6.6775 5.7578 -1.4239 35 1 7.0112 4.0453 -1.7755 36 1 7.8226 4.0616 0.4239 37 1 7.4090 6.4536 0.5404 38 1 6.3578 6.1230 1.9383 39 1 8.2781 5.1236 3.1470 40 1 9.3298 5.4541 1.7494 41 1 8.8713 7.8805 1.9791 42 1 7.8197 7.5494 3.3765 43 1 11.6522 9.2289 5.5227 44 1 3.2285 3.6640 -0.0003 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178644804.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:26 Heat of formation + Delta-G solvation = -34.274190 kcal Electronic energy + Delta-G solvation = -20548.901375 eV Core-core repulsion = 17465.629888 eV Total energy + Delta-G solvation = -3083.271487 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.36021 -38.45234 -36.52446 -34.03026 -32.28490 -32.23588 -30.69155 -29.55983 -28.82027 -26.22813 -24.53890 -22.95652 -22.78686 -21.82785 -20.56942 -19.95508 -17.96064 -16.71211 -16.37509 -16.25333 -16.02861 -15.40307 -14.85837 -14.63162 -14.17192 -13.76170 -13.70039 -13.50352 -13.39453 -13.00640 -12.91538 -12.67729 -12.42354 -12.14812 -11.97424 -11.91275 -11.62029 -11.38871 -11.34039 -10.97005 -10.92113 -10.77861 -10.76037 -9.93281 -9.70295 -9.56796 -9.14359 -8.91527 -8.50572 -8.26729 -8.22106 -6.00891 -3.98437 1.23409 1.39918 2.94690 3.33072 3.40029 3.43686 3.66649 4.33521 4.48090 4.55383 4.56613 4.67205 4.78627 4.84716 4.98731 4.99014 5.13901 5.18453 5.31507 5.33007 5.40544 5.41779 5.43870 5.58638 5.64811 5.75014 5.76445 5.82761 5.92318 6.01948 6.19336 6.20914 6.37975 6.47316 6.59590 6.64759 6.69643 6.95153 7.23080 7.27458 7.37837 7.47069 7.57791 7.83797 8.58510 9.04819 9.61776 11.12679 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.029847 B = 0.002608 C = 0.002572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.901644 B =10735.401494 C =10885.099342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.055 3.945 3 O -0.319 6.319 4 C 0.126 3.874 5 C -0.216 4.216 6 C -0.082 4.082 7 C -0.134 4.134 8 C -0.022 4.022 9 C 0.119 3.881 10 H 0.087 0.913 11 C -0.177 4.177 12 N -0.681 5.681 13 C 0.057 3.943 14 C -0.099 4.099 15 C -0.013 4.013 16 C -0.518 4.518 17 H 0.072 0.928 18 C 0.064 3.936 19 N -0.905 5.905 20 Si 0.881 3.119 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.266 1.266 24 C -0.150 4.150 25 H 0.066 0.934 26 H 0.065 0.935 27 H 0.077 0.923 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.123 0.877 31 H 0.122 0.878 32 H 0.124 0.876 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.340 0.660 37 H 0.026 0.974 38 H 0.067 0.933 39 H 0.062 0.938 40 H 0.051 0.949 41 H 0.013 0.987 42 H 0.011 0.989 43 H 0.262 0.738 44 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.181 -16.912 -14.931 29.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.233 6.233 4 C 0.082 3.918 5 C -0.235 4.235 6 C -0.100 4.100 7 C -0.152 4.152 8 C -0.023 4.023 9 C 0.008 3.992 10 H 0.105 0.895 11 C -0.236 4.236 12 N -0.312 5.312 13 C -0.071 4.071 14 C -0.137 4.137 15 C -0.051 4.051 16 C -0.556 4.556 17 H 0.090 0.910 18 C -0.137 4.137 19 N -0.544 5.544 20 Si 0.708 3.292 21 H -0.203 1.203 22 H -0.215 1.215 23 H -0.191 1.191 24 C -0.169 4.169 25 H 0.085 0.915 26 H 0.084 0.916 27 H 0.096 0.904 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.140 0.860 31 H 0.140 0.860 32 H 0.142 0.858 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.158 0.842 37 H 0.044 0.956 38 H 0.086 0.914 39 H 0.081 0.919 40 H 0.070 0.930 41 H 0.031 0.969 42 H 0.029 0.971 43 H 0.072 0.928 44 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -19.579 -16.837 -14.254 29.496 hybrid contribution 0.061 1.026 -0.795 1.300 sum -19.518 -15.811 -15.049 29.281 Atomic orbital electron populations 1.21777 0.92831 1.02777 1.03558 1.22747 0.95774 0.82176 1.01306 1.86057 1.19284 1.29083 1.88876 1.18881 0.82025 0.94063 0.96876 1.21162 0.94501 0.97695 1.10094 1.20922 0.94194 0.97330 0.97556 1.20854 1.00059 0.91618 1.02678 1.19606 0.91879 0.95306 0.95472 1.20466 0.94302 0.92853 0.91542 0.89514 1.22476 1.02002 1.01959 0.97149 1.60613 1.06515 1.23897 1.40134 1.22192 1.00138 0.87231 0.97584 1.21443 0.94520 0.99819 0.97951 1.19543 0.96996 0.92429 0.96118 1.21156 1.11271 0.96335 1.26843 0.91032 1.25053 0.94872 0.99033 0.94719 1.69917 1.25333 1.27507 1.31642 0.86761 0.79869 0.83242 0.79286 1.20308 1.21461 1.19091 1.20222 0.94585 0.94786 1.07295 0.91467 0.91560 0.90441 0.92193 0.92082 0.85951 0.85952 0.85791 0.92026 0.91950 0.92167 0.84164 0.95590 0.91440 0.91935 0.93030 0.96866 0.97057 0.92803 0.85513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 10.28 37.16 0.38 -0.47 16 2 C 0.06 0.41 5.46 37.16 0.20 0.61 16 3 O -0.32 -3.51 10.14 -19.44 -0.20 -3.70 16 4 C 0.13 1.48 6.69 -39.22 -0.26 1.22 16 5 C -0.22 -2.24 9.04 -39.43 -0.36 -2.60 16 6 C -0.08 -0.85 10.04 -39.61 -0.40 -1.25 16 7 C -0.13 -1.54 9.32 -39.56 -0.37 -1.91 16 8 C -0.02 -0.26 4.95 -104.64 -0.52 -0.78 16 9 C 0.12 1.42 2.79 -68.86 -0.19 1.23 16 10 H 0.09 1.06 7.66 -51.93 -0.40 0.66 16 11 C -0.18 -1.84 9.14 37.16 0.34 -1.50 16 12 N -0.68 -9.48 5.71 -107.94 -0.62 -10.09 16 13 C 0.06 0.92 5.48 -3.82 -0.02 0.90 16 14 C -0.10 -1.98 5.41 -26.72 -0.14 -2.13 16 15 C -0.01 -0.31 4.04 -27.88 -0.11 -0.43 16 16 C -0.52 -15.06 9.66 -34.44 -0.33 -15.39 16 17 H 0.07 2.23 7.99 -52.48 -0.42 1.82 16 18 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16 19 N -0.90 -28.35 13.96 55.43 0.77 -27.57 16 20 Si 0.88 22.07 27.47 -169.99 -4.67 17.40 16 21 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 22 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 23 H -0.27 -6.39 6.54 56.52 0.37 -6.02 16 24 C -0.15 -1.81 9.61 -39.44 -0.38 -2.19 16 25 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.06 0.38 7.66 -51.93 -0.40 -0.02 16 29 H 0.06 0.41 7.66 -51.93 -0.40 0.01 16 30 H 0.12 1.00 6.30 -52.49 -0.33 0.66 16 31 H 0.12 1.00 8.06 -52.48 -0.42 0.58 16 32 H 0.12 1.33 7.25 -52.49 -0.38 0.95 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.67 7.45 -51.93 -0.39 0.28 16 35 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 36 H 0.34 4.38 7.82 -39.29 -0.31 4.08 16 37 H 0.03 0.41 7.43 -51.93 -0.39 0.02 16 38 H 0.07 1.11 8.06 -51.93 -0.42 0.69 16 39 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 40 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 41 H 0.01 0.32 7.20 -51.93 -0.37 -0.06 16 42 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 43 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 44 H 0.13 1.42 8.04 -52.49 -0.42 1.00 16 LS Contribution 356.85 15.07 5.38 5.38 Total: -1.00 -32.03 356.85 -9.15 -41.18 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -7.56 Total: 0.30 kcal Atomic # 6 Polarization: -20.62 SS G_CDS: -2.26 Total: -22.88 kcal Atomic # 7 Polarization: -37.82 SS G_CDS: 0.16 Total: -37.67 kcal Atomic # 8 Polarization: -3.51 SS G_CDS: -0.20 Total: -3.70 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.67 Total: 17.40 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.03 -9.15 -41.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178644804.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.902 kcal (2) G-P(sol) polarization free energy of solvation -32.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds