Wall clock time and date at job start Mon Mar 30 2020 02:10:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42901 * 109.47146 * 2 1 4 4 C 1.35903 * 117.00073 * 180.02562 * 3 2 1 5 5 C 1.38752 * 120.05202 * 0.02562 * 4 3 2 6 6 C 1.38125 * 119.94174 * 179.97438 * 5 4 3 7 7 C 1.38285 * 120.05713 * 359.73841 * 6 5 4 8 8 C 1.38247 * 120.10723 * 0.51476 * 7 6 5 9 9 C 1.50703 * 119.96984 * 179.76626 * 8 7 6 10 10 H 1.08999 * 109.47040 * 199.72872 * 9 8 7 11 11 C 1.52997 * 109.47440 * 79.72505 * 9 8 7 12 12 N 1.46906 * 109.46953 * 319.72411 * 9 8 7 13 13 C 1.46902 * 110.99573 * 205.00087 * 12 9 8 14 14 C 1.53008 * 109.46622 * 179.97438 * 13 12 9 15 15 C 1.53004 * 109.46689 * 180.02562 * 14 13 12 16 16 C 1.50697 * 109.46812 * 180.02562 * 15 14 13 17 17 H 1.08003 * 120.00063 * 359.97438 * 16 15 14 18 18 C 1.37882 * 120.00212 * 179.97438 * 16 15 14 19 19 N 1.31510 * 120.00189 * 179.97438 * 18 16 15 20 20 Si 1.86803 * 119.99712 * 359.97438 * 18 16 15 21 21 H 1.48495 * 109.47426 * 89.99638 * 20 18 16 22 22 H 1.48501 * 109.47045 * 210.00047 * 20 18 16 23 23 H 1.48507 * 109.46759 * 330.00040 * 20 18 16 24 24 C 1.38166 * 120.05823 * 359.48775 * 8 7 6 25 25 H 1.09001 * 109.46649 * 300.00434 * 1 2 3 26 26 H 1.09000 * 109.47083 * 60.00022 * 1 2 3 27 27 H 1.08994 * 109.47298 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46785 * 240.00102 * 2 1 3 29 29 H 1.09000 * 109.47083 * 119.99978 * 2 1 3 30 30 H 1.07997 * 120.02836 * 359.97438 * 5 4 3 31 31 H 1.08004 * 119.97053 * 180.02562 * 6 5 4 32 32 H 1.07994 * 119.94708 * 180.28191 * 7 6 5 33 33 H 1.09002 * 109.46897 * 59.99415 * 11 9 8 34 34 H 1.08994 * 109.47330 * 180.02562 * 11 9 8 35 35 H 1.09005 * 109.46664 * 300.00064 * 11 9 8 36 36 H 1.00896 * 111.00309 * 81.04499 * 12 9 8 37 37 H 1.08990 * 109.47358 * 299.99539 * 13 12 9 38 38 H 1.09004 * 109.47457 * 60.00221 * 13 12 9 39 39 H 1.09006 * 109.47203 * 299.99590 * 14 13 12 40 40 H 1.08995 * 109.47152 * 60.00028 * 14 13 12 41 41 H 1.09006 * 109.46807 * 299.99641 * 15 14 13 42 42 H 1.08995 * 109.47458 * 60.00024 * 15 14 13 43 43 H 0.96997 * 120.00150 * 179.97438 * 19 18 16 44 44 H 1.07994 * 120.02688 * 180.27470 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3537 1.5254 -0.0005 5 6 4.1999 0.4258 -0.0016 6 6 5.5689 0.6094 -0.0027 7 6 6.0963 1.8877 -0.0082 8 6 5.2552 2.9849 -0.0019 9 6 5.8333 4.3766 -0.0025 10 1 5.0812 5.0826 0.3495 11 6 6.2590 4.7514 -1.4235 12 7 7.0017 4.4220 0.8867 13 6 7.2329 5.7851 1.3831 14 6 8.4546 5.7921 2.3042 15 6 8.6950 7.2118 2.8216 16 6 9.8986 7.2188 3.7284 17 1 10.4379 6.3023 3.9170 18 6 10.3115 8.3952 4.3171 19 7 11.3616 8.4012 5.1088 20 14 9.3791 9.9806 3.9902 21 1 8.3048 10.1409 5.0027 22 1 10.3142 11.1311 4.0742 23 1 8.7771 9.9300 2.6335 24 6 3.8851 2.8066 -0.0007 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.7886 -0.5728 -0.0016 31 1 6.2281 -0.2462 -0.0039 32 1 7.1669 2.0292 -0.0136 33 1 5.3921 4.7177 -2.0833 34 1 6.6775 5.7578 -1.4239 35 1 7.0112 4.0453 -1.7755 36 1 7.8226 4.0616 0.4239 37 1 7.4090 6.4536 0.5404 38 1 6.3578 6.1230 1.9383 39 1 8.2781 5.1236 3.1470 40 1 9.3298 5.4541 1.7494 41 1 8.8713 7.8805 1.9791 42 1 7.8197 7.5494 3.3765 43 1 11.6522 9.2289 5.5227 44 1 3.2285 3.6640 -0.0003 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178644804.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:25 Heat of formation + Delta-G solvation = -53.361478 kcal Electronic energy + Delta-G solvation = -20549.729062 eV Core-core repulsion = 17465.629888 eV Total energy + Delta-G solvation = -3084.099174 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.15573 -39.32946 -37.60222 -35.72787 -34.03122 -32.87282 -31.96924 -30.50572 -29.77356 -27.86896 -25.32500 -24.19899 -23.60775 -23.00941 -21.94037 -21.14830 -18.97088 -18.70283 -17.04653 -17.01750 -16.96861 -16.56079 -16.31491 -15.94641 -15.53099 -14.89379 -14.72116 -14.52216 -14.39007 -14.21460 -13.86158 -13.75938 -13.48907 -13.35043 -13.12786 -12.83541 -12.66210 -12.61567 -12.51442 -12.27728 -12.14022 -11.78428 -11.66262 -11.59711 -11.50179 -11.39229 -11.23212 -10.75556 -9.78043 -9.30915 -9.09162 -8.28496 -6.32620 0.39686 0.55353 1.36746 1.38438 1.50668 2.26193 2.37171 2.81299 3.06637 3.27921 3.79546 3.90745 4.05991 4.08068 4.13719 4.21708 4.25249 4.29892 4.38370 4.41341 4.47385 4.53189 4.62955 4.68941 4.77877 4.82507 4.93924 4.94254 4.98746 5.01991 5.10633 5.14587 5.20548 5.21583 5.39065 5.52518 5.55351 5.62718 5.67096 5.69210 5.88390 6.14000 6.30941 6.49430 6.51209 6.75760 7.31746 8.88456 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.029847 B = 0.002608 C = 0.002572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.901644 B =10735.401494 C =10885.099342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.046 3.954 3 O -0.336 6.336 4 C 0.115 3.885 5 C -0.217 4.217 6 C -0.084 4.084 7 C -0.147 4.147 8 C -0.031 4.031 9 C 0.122 3.878 10 H 0.084 0.916 11 C -0.170 4.170 12 N -0.687 5.687 13 C 0.071 3.929 14 C -0.090 4.090 15 C -0.010 4.010 16 C -0.533 4.533 17 H 0.029 0.971 18 C -0.001 4.001 19 N -0.953 5.953 20 Si 0.955 3.045 21 H -0.267 1.267 22 H -0.284 1.284 23 H -0.244 1.244 24 C -0.167 4.167 25 H 0.060 0.940 26 H 0.063 0.937 27 H 0.100 0.900 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.145 0.855 31 H 0.145 0.855 32 H 0.128 0.872 33 H 0.070 0.930 34 H 0.060 0.940 35 H 0.064 0.936 36 H 0.346 0.654 37 H 0.037 0.963 38 H 0.067 0.933 39 H 0.046 0.954 40 H 0.048 0.952 41 H 0.021 0.979 42 H 0.018 0.982 43 H 0.266 0.734 44 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.036 -17.149 -16.447 31.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.029 4.029 3 O -0.251 6.251 4 C 0.070 3.930 5 C -0.235 4.235 6 C -0.102 4.102 7 C -0.166 4.166 8 C -0.032 4.032 9 C 0.012 3.988 10 H 0.102 0.898 11 C -0.229 4.229 12 N -0.318 5.318 13 C -0.058 4.058 14 C -0.128 4.128 15 C -0.048 4.048 16 C -0.571 4.571 17 H 0.047 0.953 18 C -0.197 4.197 19 N -0.594 5.594 20 Si 0.778 3.222 21 H -0.192 1.192 22 H -0.210 1.210 23 H -0.168 1.168 24 C -0.186 4.186 25 H 0.079 0.921 26 H 0.082 0.918 27 H 0.119 0.881 28 H 0.090 0.910 29 H 0.086 0.914 30 H 0.163 0.837 31 H 0.163 0.837 32 H 0.146 0.854 33 H 0.089 0.911 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.165 0.835 37 H 0.055 0.945 38 H 0.086 0.914 39 H 0.065 0.935 40 H 0.067 0.933 41 H 0.040 0.960 42 H 0.036 0.964 43 H 0.075 0.925 44 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -21.451 -17.102 -15.789 31.653 hybrid contribution 0.658 0.948 -0.291 1.190 sum -20.792 -16.154 -16.080 30.852 Atomic orbital electron populations 1.21810 0.91618 1.04161 1.03088 1.23041 0.96800 0.80843 1.02196 1.86044 1.18962 1.31286 1.88809 1.19059 0.82648 0.94332 0.96919 1.21442 0.94443 0.98454 1.09197 1.21232 0.94667 0.97706 0.96601 1.21021 1.00306 0.92086 1.03145 1.19625 0.92014 0.95399 0.96143 1.20450 0.93273 0.93060 0.92036 0.89824 1.22403 1.02477 1.01874 0.96158 1.60514 1.07468 1.22458 1.41351 1.21907 0.97961 0.88795 0.97114 1.21260 0.96463 0.96942 0.98178 1.19494 0.94803 0.95171 0.95370 1.21528 1.12718 0.94959 1.27882 0.95255 1.26095 0.95880 1.03398 0.94343 1.70078 1.27369 1.28841 1.33093 0.85591 0.78505 0.77769 0.80358 1.19243 1.20963 1.16762 1.20351 0.94784 0.95360 1.08137 0.92126 0.91830 0.88114 0.90982 0.91399 0.83730 0.83685 0.85402 0.91139 0.92105 0.91655 0.83510 0.94486 0.91446 0.93512 0.93282 0.96026 0.96406 0.92534 0.85464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 10.28 71.98 0.74 -0.70 16 2 C 0.05 0.60 5.46 71.98 0.39 1.00 16 3 O -0.34 -7.10 10.14 -92.46 -0.94 -8.03 16 4 C 0.12 2.59 6.69 22.50 0.15 2.74 16 5 C -0.22 -4.12 9.04 22.37 0.20 -3.91 16 6 C -0.08 -1.60 10.04 22.25 0.22 -1.38 16 7 C -0.15 -3.20 9.32 22.28 0.21 -2.99 16 8 C -0.03 -0.72 4.95 -19.88 -0.10 -0.82 16 9 C 0.12 2.76 2.79 44.17 0.12 2.88 16 10 H 0.08 1.94 7.66 -2.39 -0.02 1.93 16 11 C -0.17 -3.23 9.14 71.98 0.66 -2.58 16 12 N -0.69 -18.25 5.71 -495.43 -2.83 -21.08 16 13 C 0.07 2.19 5.48 86.31 0.47 2.66 16 14 C -0.09 -3.57 5.41 30.60 0.17 -3.41 16 15 C -0.01 -0.50 4.04 29.85 0.12 -0.37 16 16 C -0.53 -31.58 9.66 25.60 0.25 -31.34 16 17 H 0.03 1.91 7.99 -2.91 -0.02 1.89 16 18 C 0.00 -0.05 5.47 84.66 0.46 0.41 16 19 N -0.95 -61.04 13.96 21.45 0.30 -60.74 16 20 Si 0.95 44.95 27.47 68.60 1.88 46.84 16 21 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 22 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 23 H -0.24 -10.56 6.54 99.48 0.65 -9.91 16 24 C -0.17 -3.95 9.61 22.36 0.21 -3.73 16 25 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 27 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 28 H 0.07 0.76 7.66 -2.39 -0.02 0.74 16 29 H 0.07 0.79 7.66 -2.39 -0.02 0.77 16 30 H 0.15 1.99 6.30 -2.91 -0.02 1.97 16 31 H 0.15 2.01 8.06 -2.91 -0.02 1.98 16 32 H 0.13 2.59 7.25 -2.91 -0.02 2.57 16 33 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.06 1.17 7.45 -2.39 -0.02 1.16 16 35 H 0.06 1.17 8.13 -2.38 -0.02 1.15 16 36 H 0.35 8.48 7.82 -89.70 -0.70 7.78 16 37 H 0.04 1.07 7.43 -2.39 -0.02 1.05 16 38 H 0.07 2.09 8.06 -2.38 -0.02 2.07 16 39 H 0.05 1.97 8.14 -2.38 -0.02 1.95 16 40 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 41 H 0.02 0.99 7.20 -2.38 -0.02 0.97 16 42 H 0.02 0.82 7.57 -2.39 -0.02 0.80 16 43 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 44 H 0.13 2.84 8.04 -2.91 -0.02 2.82 16 Total: -1.00 -69.65 356.85 2.90 -66.75 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: 0.20 Total: 17.81 kcal Atomic # 6 Polarization: -45.82 SS G_CDS: 4.28 Total: -41.54 kcal Atomic # 7 Polarization: -79.30 SS G_CDS: -2.53 Total: -81.83 kcal Atomic # 8 Polarization: -7.10 SS G_CDS: -0.94 Total: -8.03 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 1.88 Total: 46.84 kcal Total: -69.65 2.90 -66.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178644804.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.388 kcal (2) G-P(sol) polarization free energy of solvation -69.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds