Wall clock time and date at job start Mon Mar 30 2020 02:10:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42906 * 109.46752 * 2 1 4 4 C 1.35903 * 116.99522 * 179.97438 * 3 2 1 5 5 C 1.38725 * 120.05861 * 359.72783 * 4 3 2 6 6 C 1.38145 * 119.94387 * 179.74053 * 5 4 3 7 7 C 1.38270 * 120.05493 * 0.50964 * 6 5 4 8 8 C 1.50696 * 119.94234 * 179.73878 * 7 6 5 9 9 H 1.09000 * 109.46611 * 160.02090 * 8 7 6 10 10 C 1.52991 * 109.47774 * 280.02415 * 8 7 6 11 11 N 1.46905 * 109.46852 * 40.02978 * 8 7 6 12 12 C 1.46901 * 110.99432 * 154.99628 * 11 8 7 13 13 C 1.53006 * 109.46654 * 179.97438 * 12 11 8 14 14 C 1.53004 * 109.47291 * 180.02562 * 13 12 11 15 15 C 1.50694 * 109.47139 * 180.02562 * 14 13 12 16 16 H 1.07996 * 120.00400 * 359.97438 * 15 14 13 17 17 C 1.37883 * 119.99594 * 180.02562 * 15 14 13 18 18 N 1.31507 * 120.00249 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 119.99854 * 180.02562 * 17 15 14 20 20 H 1.48507 * 109.46761 * 359.97438 * 19 17 15 21 21 H 1.48493 * 109.47286 * 119.99481 * 19 17 15 22 22 H 1.48499 * 109.46947 * 240.00006 * 19 17 15 23 23 C 1.38261 * 120.10772 * 359.76899 * 7 6 5 24 24 C 1.38138 * 120.06029 * 359.97438 * 23 7 6 25 25 H 1.09001 * 109.46801 * 59.99865 * 1 2 3 26 26 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47050 * 299.99753 * 1 2 3 28 28 H 1.08993 * 109.46955 * 120.00418 * 2 1 3 29 29 H 1.09000 * 109.47050 * 240.00247 * 2 1 3 30 30 H 1.08000 * 120.02603 * 359.97438 * 5 4 3 31 31 H 1.08003 * 119.97031 * 180.27907 * 6 5 4 32 32 H 1.08996 * 109.47545 * 179.97438 * 10 8 7 33 33 H 1.09005 * 109.47237 * 300.00629 * 10 8 7 34 34 H 1.09009 * 109.47219 * 60.00297 * 10 8 7 35 35 H 1.00896 * 111.00085 * 278.94220 * 11 8 7 36 36 H 1.08997 * 109.47367 * 299.99089 * 12 11 8 37 37 H 1.08999 * 109.47822 * 60.00147 * 12 11 8 38 38 H 1.09001 * 109.47349 * 300.00057 * 13 12 11 39 39 H 1.09000 * 109.47216 * 60.00242 * 13 12 11 40 40 H 1.09001 * 109.46846 * 300.00212 * 14 13 12 41 41 H 1.09002 * 109.47068 * 59.99379 * 14 13 12 42 42 H 0.96999 * 120.00270 * 180.02562 * 18 17 15 43 43 H 1.08006 * 119.96917 * 179.97438 * 23 7 6 44 44 H 1.07997 * 120.03028 * 180.02562 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.3536 1.5254 0.0005 5 6 4.1998 0.4261 0.0068 6 6 5.5690 0.6098 0.0019 7 6 6.0962 1.8880 0.0014 8 6 7.5902 2.0855 0.0021 9 1 7.8239 3.0904 -0.3495 10 6 8.1281 1.9042 1.4228 11 7 8.2149 1.0977 -0.8879 12 6 9.5102 1.5814 -1.3842 13 6 10.1292 0.5278 -2.3050 14 6 11.4786 1.0312 -2.8214 15 6 12.0878 -0.0062 -3.7289 16 1 11.5652 -0.9322 -3.9181 17 6 13.3132 0.2263 -4.3168 18 7 13.9499 1.3536 -4.0861 19 14 14.0682 -1.0594 -5.4423 20 1 13.1584 -2.2293 -5.5376 21 1 14.2699 -0.4773 -6.7934 22 1 15.3763 -1.4938 -4.8899 23 6 5.2549 2.9852 0.0011 24 6 3.8851 2.8069 0.0006 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 3.7885 -0.5725 0.0116 31 1 6.2281 -0.2458 0.0022 32 1 9.2087 2.0465 1.4231 33 1 7.6644 2.6371 2.0832 34 1 7.8944 0.8992 1.7743 35 1 8.3148 0.2065 -0.4256 36 1 9.3638 2.5082 -1.9388 37 1 10.1772 1.7637 -0.5415 38 1 10.2757 -0.3988 -1.7501 39 1 9.4625 0.3451 -3.1478 40 1 11.3325 1.9580 -3.3763 41 1 12.1451 1.2137 -1.9785 42 1 14.8117 1.5174 -4.5000 43 1 5.6692 3.9827 0.0011 44 1 3.2284 3.6643 -0.0001 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178649515.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:29 Heat of formation + Delta-G solvation = -38.310770 kcal Electronic energy + Delta-G solvation = -20463.050819 eV Core-core repulsion = 17379.604293 eV Total energy + Delta-G solvation = -3083.446527 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.31737 -38.42912 -36.40931 -33.91712 -32.37783 -31.76133 -31.02369 -29.67372 -28.29632 -25.90123 -24.29884 -23.51642 -22.58803 -21.57994 -20.62755 -19.94455 -18.42720 -16.47523 -16.34256 -16.03982 -15.74748 -15.05679 -14.77450 -14.47787 -14.28785 -13.90263 -13.61197 -13.55287 -13.25303 -13.00262 -12.91535 -12.63677 -12.19722 -12.14122 -11.96060 -11.79922 -11.47045 -11.36611 -10.98688 -10.89482 -10.84101 -10.75480 -10.55540 -10.43113 -9.68040 -9.32028 -9.04104 -9.02416 -8.32684 -8.21034 -8.05589 -5.97635 -3.99442 1.29954 1.39424 2.99808 3.32639 3.39920 3.44520 3.69576 4.39009 4.50730 4.58461 4.59400 4.77889 4.83080 4.86149 4.91688 5.12562 5.18040 5.25832 5.36127 5.38225 5.42828 5.43321 5.56464 5.66773 5.69070 5.74559 5.88814 5.91239 6.00539 6.08142 6.22090 6.33986 6.35586 6.58524 6.70700 6.75368 6.83111 7.16446 7.28377 7.38514 7.64041 7.71496 7.86483 8.03147 8.46619 9.08063 9.64422 11.13844 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.027132 B = 0.002545 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.729678 B =11001.271374 C =11656.298853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.054 3.946 3 O -0.320 6.320 4 C 0.119 3.881 5 C -0.209 4.209 6 C -0.058 4.058 7 C -0.097 4.097 8 C 0.123 3.877 9 H 0.084 0.916 10 C -0.177 4.177 11 N -0.683 5.683 12 C 0.059 3.941 13 C -0.107 4.107 14 C 0.022 3.978 15 C -0.517 4.517 16 H 0.055 0.945 17 C 0.054 3.946 18 N -0.896 5.896 19 Si 0.892 3.108 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.285 1.285 23 C -0.078 4.078 24 C -0.153 4.153 25 H 0.066 0.934 26 H 0.077 0.923 27 H 0.065 0.935 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.124 0.876 31 H 0.124 0.876 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.056 0.944 35 H 0.337 0.663 36 H 0.067 0.933 37 H 0.025 0.975 38 H 0.044 0.956 39 H 0.055 0.945 40 H 0.016 0.984 41 H 0.013 0.987 42 H 0.259 0.741 43 H 0.127 0.873 44 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.693 0.093 12.383 26.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.234 6.234 4 C 0.075 3.925 5 C -0.227 4.227 6 C -0.076 4.076 7 C -0.097 4.097 8 C 0.012 3.988 9 H 0.103 0.897 10 C -0.236 4.236 11 N -0.313 5.313 12 C -0.069 4.069 13 C -0.145 4.145 14 C -0.016 4.016 15 C -0.556 4.556 16 H 0.074 0.926 17 C -0.146 4.146 18 N -0.536 5.536 19 Si 0.720 3.280 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.211 1.211 23 C -0.096 4.096 24 C -0.171 4.171 25 H 0.085 0.915 26 H 0.096 0.904 27 H 0.084 0.916 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.142 0.858 31 H 0.142 0.858 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.155 0.845 36 H 0.085 0.915 37 H 0.044 0.956 38 H 0.063 0.937 39 H 0.074 0.926 40 H 0.034 0.966 41 H 0.032 0.968 42 H 0.069 0.931 43 H 0.145 0.855 44 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -24.030 0.531 11.771 26.763 hybrid contribution 1.179 -1.001 0.122 1.551 sum -22.851 -0.470 11.893 25.765 Atomic orbital electron populations 1.21775 0.92869 1.02798 1.03446 1.22752 0.95724 0.82172 1.01429 1.86042 1.19345 1.29113 1.88941 1.18961 0.82008 0.94246 0.97327 1.21206 0.94424 0.97796 1.09313 1.20721 0.93770 0.97133 0.95969 1.19757 0.95120 0.93040 1.01830 1.20399 0.89861 0.97302 0.91195 0.89741 1.22487 1.01468 1.02176 0.97452 1.60680 1.25588 1.04999 1.40061 1.22159 0.87460 0.99696 0.97564 1.21623 0.98830 0.96418 0.97619 1.19070 0.90129 0.96561 0.95841 1.21297 1.03529 1.03087 1.27641 0.92638 1.25040 0.97237 0.95518 0.96829 1.69973 1.15177 1.24056 1.44405 0.86542 0.79099 0.81801 0.80600 1.19739 1.21018 1.21078 1.20813 0.92029 0.98682 0.98121 1.20330 0.95072 0.94651 1.07086 0.91529 0.90426 0.91611 0.92153 0.92001 0.85828 0.85782 0.92077 0.92158 0.92457 0.84531 0.91457 0.95633 0.93721 0.92572 0.96581 0.96819 0.93113 0.85531 0.85524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 10.28 37.16 0.38 -0.49 16 2 C 0.05 0.42 5.46 37.16 0.20 0.62 16 3 O -0.32 -3.51 10.14 -19.43 -0.20 -3.71 16 4 C 0.12 1.40 6.69 -39.22 -0.26 1.13 16 5 C -0.21 -2.33 9.04 -39.44 -0.36 -2.68 16 6 C -0.06 -0.68 9.32 -39.60 -0.37 -1.05 16 7 C -0.10 -1.17 4.96 -104.60 -0.52 -1.69 16 8 C 0.12 1.52 2.79 -68.87 -0.19 1.33 16 9 H 0.08 1.06 7.66 -51.93 -0.40 0.67 16 10 C -0.18 -1.92 9.14 37.15 0.34 -1.58 16 11 N -0.68 -9.91 5.70 -107.95 -0.62 -10.52 16 12 C 0.06 1.03 5.48 -3.82 -0.02 1.00 16 13 C -0.11 -2.23 5.41 -26.73 -0.14 -2.38 16 14 C 0.02 0.56 4.97 -27.88 -0.14 0.43 16 15 C -0.52 -14.90 9.11 -34.44 -0.31 -15.21 16 16 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 17 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 18 N -0.90 -27.28 13.29 55.43 0.74 -26.55 16 19 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 20 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 23 C -0.08 -0.88 9.66 -39.61 -0.38 -1.26 16 24 C -0.15 -1.73 9.99 -39.44 -0.39 -2.12 16 25 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 27 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.41 7.65 -51.93 -0.40 0.01 16 29 H 0.06 0.45 7.68 -51.93 -0.40 0.05 16 30 H 0.12 1.13 6.30 -52.49 -0.33 0.80 16 31 H 0.12 1.37 7.24 -52.48 -0.38 0.99 16 32 H 0.06 0.70 7.45 -51.93 -0.39 0.31 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.59 8.13 -51.92 -0.42 0.17 16 35 H 0.34 4.54 7.81 -39.29 -0.31 4.23 16 36 H 0.07 1.19 8.05 -51.93 -0.42 0.78 16 37 H 0.03 0.43 7.44 -51.93 -0.39 0.05 16 38 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 39 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 43 H 0.13 1.18 8.03 -52.48 -0.42 0.76 16 44 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 LS Contribution 360.43 15.07 5.43 5.43 Total: -1.00 -31.47 360.43 -9.52 -40.99 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -7.59 Total: -0.11 kcal Atomic # 6 Polarization: -20.19 SS G_CDS: -2.27 Total: -22.46 kcal Atomic # 7 Polarization: -37.19 SS G_CDS: 0.12 Total: -37.07 kcal Atomic # 8 Polarization: -3.51 SS G_CDS: -0.20 Total: -3.71 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.47 -9.52 -40.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178649515.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.682 kcal (2) G-P(sol) polarization free energy of solvation -31.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds