Wall clock time and date at job start Mon Mar 30 2020 02:10:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42906 * 109.46752 * 2 1 4 4 C 1.35903 * 116.99522 * 179.97438 * 3 2 1 5 5 C 1.38725 * 120.05861 * 359.72783 * 4 3 2 6 6 C 1.38145 * 119.94387 * 179.74053 * 5 4 3 7 7 C 1.38270 * 120.05493 * 0.50964 * 6 5 4 8 8 C 1.50696 * 119.94234 * 179.73878 * 7 6 5 9 9 H 1.09000 * 109.46611 * 160.02090 * 8 7 6 10 10 C 1.52991 * 109.47774 * 280.02415 * 8 7 6 11 11 N 1.46905 * 109.46852 * 40.02978 * 8 7 6 12 12 C 1.46901 * 110.99432 * 154.99628 * 11 8 7 13 13 C 1.53006 * 109.46654 * 179.97438 * 12 11 8 14 14 C 1.53004 * 109.47291 * 180.02562 * 13 12 11 15 15 C 1.50694 * 109.47139 * 180.02562 * 14 13 12 16 16 H 1.07996 * 120.00400 * 359.97438 * 15 14 13 17 17 C 1.37883 * 119.99594 * 180.02562 * 15 14 13 18 18 N 1.31507 * 120.00249 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 119.99854 * 180.02562 * 17 15 14 20 20 H 1.48507 * 109.46761 * 359.97438 * 19 17 15 21 21 H 1.48493 * 109.47286 * 119.99481 * 19 17 15 22 22 H 1.48499 * 109.46947 * 240.00006 * 19 17 15 23 23 C 1.38261 * 120.10772 * 359.76899 * 7 6 5 24 24 C 1.38138 * 120.06029 * 359.97438 * 23 7 6 25 25 H 1.09001 * 109.46801 * 59.99865 * 1 2 3 26 26 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47050 * 299.99753 * 1 2 3 28 28 H 1.08993 * 109.46955 * 120.00418 * 2 1 3 29 29 H 1.09000 * 109.47050 * 240.00247 * 2 1 3 30 30 H 1.08000 * 120.02603 * 359.97438 * 5 4 3 31 31 H 1.08003 * 119.97031 * 180.27907 * 6 5 4 32 32 H 1.08996 * 109.47545 * 179.97438 * 10 8 7 33 33 H 1.09005 * 109.47237 * 300.00629 * 10 8 7 34 34 H 1.09009 * 109.47219 * 60.00297 * 10 8 7 35 35 H 1.00896 * 111.00085 * 278.94220 * 11 8 7 36 36 H 1.08997 * 109.47367 * 299.99089 * 12 11 8 37 37 H 1.08999 * 109.47822 * 60.00147 * 12 11 8 38 38 H 1.09001 * 109.47349 * 300.00057 * 13 12 11 39 39 H 1.09000 * 109.47216 * 60.00242 * 13 12 11 40 40 H 1.09001 * 109.46846 * 300.00212 * 14 13 12 41 41 H 1.09002 * 109.47068 * 59.99379 * 14 13 12 42 42 H 0.96999 * 120.00270 * 180.02562 * 18 17 15 43 43 H 1.08006 * 119.96917 * 179.97438 * 23 7 6 44 44 H 1.07997 * 120.03028 * 180.02562 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.3536 1.5254 0.0005 5 6 4.1998 0.4261 0.0068 6 6 5.5690 0.6098 0.0019 7 6 6.0962 1.8880 0.0014 8 6 7.5902 2.0855 0.0021 9 1 7.8239 3.0904 -0.3495 10 6 8.1281 1.9042 1.4228 11 7 8.2149 1.0977 -0.8879 12 6 9.5102 1.5814 -1.3842 13 6 10.1292 0.5278 -2.3050 14 6 11.4786 1.0312 -2.8214 15 6 12.0878 -0.0062 -3.7289 16 1 11.5652 -0.9322 -3.9181 17 6 13.3132 0.2263 -4.3168 18 7 13.9499 1.3536 -4.0861 19 14 14.0682 -1.0594 -5.4423 20 1 13.1584 -2.2293 -5.5376 21 1 14.2699 -0.4773 -6.7934 22 1 15.3763 -1.4938 -4.8899 23 6 5.2549 2.9852 0.0011 24 6 3.8851 2.8069 0.0006 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 3.7885 -0.5725 0.0116 31 1 6.2281 -0.2458 0.0022 32 1 9.2087 2.0465 1.4231 33 1 7.6644 2.6371 2.0832 34 1 7.8944 0.8992 1.7743 35 1 8.3148 0.2065 -0.4256 36 1 9.3638 2.5082 -1.9388 37 1 10.1772 1.7637 -0.5415 38 1 10.2757 -0.3988 -1.7501 39 1 9.4625 0.3451 -3.1478 40 1 11.3325 1.9580 -3.3763 41 1 12.1451 1.2137 -1.9785 42 1 14.8117 1.5174 -4.5000 43 1 5.6692 3.9827 0.0011 44 1 3.2284 3.6643 -0.0001 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178649515.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:28 Heat of formation + Delta-G solvation = -56.024020 kcal Electronic energy + Delta-G solvation = -20463.818923 eV Core-core repulsion = 17379.604293 eV Total energy + Delta-G solvation = -3084.214631 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.13659 -39.34008 -37.55873 -35.71553 -33.89400 -32.66094 -31.88265 -31.05004 -29.23529 -27.67415 -25.09128 -24.60330 -24.01098 -22.49021 -22.00535 -21.24729 -19.21076 -18.49968 -17.13388 -17.00847 -16.77303 -16.52839 -16.31194 -15.63422 -15.45779 -14.94370 -14.53494 -14.42535 -14.28281 -14.25712 -13.81251 -13.70367 -13.65825 -13.31349 -13.09774 -12.83060 -12.69862 -12.59435 -12.45999 -12.42713 -12.21303 -11.90421 -11.60796 -11.56254 -11.50601 -11.35097 -11.05520 -10.55564 -9.89439 -9.34366 -8.97049 -8.19979 -6.30741 0.44782 0.51235 1.39938 1.40394 1.53928 2.30350 2.41101 2.81108 3.13032 3.28567 3.86888 3.90175 4.00062 4.06352 4.13865 4.23780 4.27024 4.36005 4.37955 4.44390 4.51793 4.54980 4.67199 4.72513 4.80983 4.86157 4.94390 4.94846 5.03881 5.10618 5.17652 5.20790 5.21916 5.26073 5.37635 5.47135 5.53187 5.71668 5.76833 5.86948 5.87885 6.13191 6.28612 6.50611 6.51242 6.86524 7.38350 8.92069 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.027132 B = 0.002545 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.729678 B =11001.271374 C =11656.298853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.045 3.955 3 O -0.334 6.334 4 C 0.110 3.890 5 C -0.212 4.212 6 C -0.067 4.067 7 C -0.109 4.109 8 C 0.125 3.875 9 H 0.081 0.919 10 C -0.171 4.171 11 N -0.684 5.684 12 C 0.074 3.926 13 C -0.092 4.092 14 C 0.025 3.975 15 C -0.541 4.541 16 H 0.059 0.941 17 C -0.003 4.003 18 N -0.934 5.934 19 Si 0.966 3.034 20 H -0.262 1.262 21 H -0.278 1.278 22 H -0.277 1.277 23 C -0.082 4.082 24 C -0.163 4.163 25 H 0.061 0.939 26 H 0.098 0.902 27 H 0.064 0.936 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.141 0.859 31 H 0.129 0.871 32 H 0.053 0.947 33 H 0.072 0.928 34 H 0.062 0.938 35 H 0.344 0.656 36 H 0.060 0.940 37 H 0.027 0.973 38 H 0.051 0.949 39 H 0.050 0.950 40 H -0.010 1.010 41 H -0.008 1.008 42 H 0.263 0.737 43 H 0.142 0.858 44 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.742 -1.108 12.607 27.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.029 4.029 3 O -0.249 6.249 4 C 0.065 3.935 5 C -0.231 4.231 6 C -0.086 4.086 7 C -0.110 4.110 8 C 0.016 3.984 9 H 0.099 0.901 10 C -0.230 4.230 11 N -0.315 5.315 12 C -0.055 4.055 13 C -0.130 4.130 14 C -0.013 4.013 15 C -0.579 4.579 16 H 0.077 0.923 17 C -0.201 4.201 18 N -0.574 5.574 19 Si 0.790 3.210 20 H -0.186 1.186 21 H -0.204 1.204 22 H -0.203 1.203 23 C -0.100 4.100 24 C -0.181 4.181 25 H 0.080 0.920 26 H 0.117 0.883 27 H 0.083 0.917 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.159 0.841 31 H 0.147 0.853 32 H 0.072 0.928 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.163 0.837 36 H 0.078 0.922 37 H 0.045 0.955 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.009 0.991 41 H 0.011 0.989 42 H 0.072 0.928 43 H 0.160 0.840 44 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -25.103 -0.678 12.010 27.836 hybrid contribution 1.432 -0.611 0.074 1.559 sum -23.670 -1.289 12.084 26.608 Atomic orbital electron populations 1.21802 0.91448 1.04124 1.03186 1.23026 0.96906 0.80959 1.02054 1.86036 1.18935 1.31069 1.88827 1.19172 0.82553 0.94600 0.97223 1.21398 0.94183 0.98618 1.08897 1.20867 0.94261 0.97252 0.96196 1.19780 0.94788 0.93579 1.02849 1.20392 0.90099 0.96400 0.91542 0.90085 1.22414 1.00911 1.02972 0.96653 1.60580 1.23714 1.05886 1.41350 1.21834 0.88738 0.98036 0.96864 1.21371 0.95980 0.97559 0.98105 1.18976 0.92530 0.95232 0.94551 1.21730 1.04158 1.03734 1.28310 0.92300 1.26009 0.97797 0.97808 0.98467 1.70100 1.15706 1.26066 1.45530 0.85384 0.78273 0.79038 0.78262 1.18629 1.20376 1.20270 1.21014 0.92045 0.99284 0.97647 1.20563 0.95374 0.95176 1.06998 0.91957 0.88300 0.91689 0.91202 0.91641 0.84139 0.85268 0.92814 0.90917 0.91848 0.83716 0.92194 0.95450 0.93029 0.93160 0.99131 0.98947 0.92784 0.83990 0.84412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 10.28 71.98 0.74 -0.73 16 2 C 0.05 0.63 5.46 71.98 0.39 1.02 16 3 O -0.33 -6.97 10.14 -92.46 -0.94 -7.91 16 4 C 0.11 2.45 6.69 22.50 0.15 2.60 16 5 C -0.21 -4.45 9.04 22.36 0.20 -4.25 16 6 C -0.07 -1.51 9.32 22.26 0.21 -1.30 16 7 C -0.11 -2.51 4.96 -19.85 -0.10 -2.61 16 8 C 0.13 2.96 2.79 44.16 0.12 3.09 16 9 H 0.08 1.97 7.66 -2.39 -0.02 1.95 16 10 C -0.17 -3.47 9.14 71.98 0.66 -2.81 16 11 N -0.68 -19.17 5.70 -495.45 -2.83 -22.00 16 12 C 0.07 2.54 5.48 86.31 0.47 3.01 16 13 C -0.09 -3.85 5.41 30.60 0.17 -3.69 16 14 C 0.02 1.33 4.97 29.85 0.15 1.48 16 15 C -0.54 -31.44 9.11 25.60 0.23 -31.21 16 16 H 0.06 3.30 7.74 -2.91 -0.02 3.27 16 17 C 0.00 -0.20 5.46 84.66 0.46 0.27 16 18 N -0.93 -57.55 13.29 21.45 0.28 -57.27 16 19 Si 0.97 44.88 29.54 68.60 2.03 46.90 16 20 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 21 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 22 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 23 C -0.08 -1.74 9.66 22.25 0.21 -1.52 16 24 C -0.16 -3.50 9.99 22.36 0.22 -3.28 16 25 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 27 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.07 0.83 7.65 -2.39 -0.02 0.81 16 29 H 0.07 0.86 7.68 -2.39 -0.02 0.84 16 30 H 0.14 2.33 6.30 -2.91 -0.02 2.31 16 31 H 0.13 2.66 7.24 -2.91 -0.02 2.64 16 32 H 0.05 1.17 7.45 -2.39 -0.02 1.15 16 33 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 34 H 0.06 1.21 8.13 -2.38 -0.02 1.19 16 35 H 0.34 8.81 7.81 -89.70 -0.70 8.11 16 36 H 0.06 2.14 8.05 -2.39 -0.02 2.12 16 37 H 0.03 0.92 7.44 -2.39 -0.02 0.91 16 38 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 39 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 40 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 41 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 42 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 43 H 0.14 2.46 8.03 -2.91 -0.02 2.43 16 44 H 0.14 2.54 8.06 -2.91 -0.02 2.52 16 Total: -1.00 -67.00 360.43 3.10 -63.90 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: 0.26 Total: 16.31 kcal Atomic # 6 Polarization: -44.23 SS G_CDS: 4.30 Total: -39.93 kcal Atomic # 7 Polarization: -76.73 SS G_CDS: -2.54 Total: -79.27 kcal Atomic # 8 Polarization: -6.97 SS G_CDS: -0.94 Total: -7.91 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.90 kcal Total: -67.00 3.10 -63.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178649515.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.880 kcal (2) G-P(sol) polarization free energy of solvation -67.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds