Wall clock time and date at job start Mon Mar 30 2020 01:50:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35902 * 116.99746 * 2 1 4 4 C 1.38740 * 120.05280 * 180.02562 * 3 2 1 5 5 C 1.38139 * 119.94139 * 179.97438 * 4 3 2 6 6 C 1.38265 * 120.05999 * 0.02562 * 5 4 3 7 7 C 1.50698 * 119.95000 * 180.02562 * 6 5 4 8 8 H 1.09002 * 109.46827 * 0.02562 * 7 6 5 9 9 C 1.52995 * 109.47561 * 239.99906 * 7 6 5 10 10 C 1.53001 * 109.47288 * 119.99711 * 7 6 5 11 11 N 1.46900 * 109.47338 * 184.70671 * 10 7 6 12 12 C 1.46898 * 110.99957 * 196.29757 * 11 10 7 13 13 C 1.46893 * 111.00128 * 72.33888 * 11 10 7 14 14 H 1.08999 * 109.47605 * 309.99941 * 13 11 10 15 15 C 1.53001 * 109.47094 * 70.00463 * 13 11 10 16 16 C 1.50701 * 109.47124 * 190.00302 * 13 11 10 17 17 H 1.07997 * 120.00098 * 0.02562 * 16 13 11 18 18 C 1.37875 * 120.00146 * 180.02562 * 16 13 11 19 19 N 1.31511 * 120.00067 * 0.02562 * 18 16 13 20 20 Si 1.86800 * 120.00170 * 179.97438 * 18 16 13 21 21 H 1.48501 * 109.47142 * 59.99572 * 20 18 16 22 22 H 1.48497 * 109.47622 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.47198 * 300.00152 * 20 18 16 24 24 C 1.38275 * 120.10996 * 0.27041 * 6 5 4 25 25 C 1.38149 * 120.05295 * 359.45800 * 24 6 5 26 26 H 1.08997 * 109.46682 * 299.99715 * 1 2 3 27 27 H 1.08995 * 109.47068 * 59.99485 * 1 2 3 28 28 H 1.08998 * 109.47065 * 179.97438 * 1 2 3 29 29 H 1.07992 * 120.02605 * 359.95781 * 4 3 2 30 30 H 1.08001 * 119.97333 * 180.02562 * 5 4 3 31 31 H 1.09000 * 109.46820 * 294.92452 * 9 7 6 32 32 H 1.09000 * 109.46928 * 54.92172 * 9 7 6 33 33 H 1.08992 * 109.47374 * 174.91969 * 9 7 6 34 34 H 1.09001 * 109.46822 * 64.70196 * 10 7 6 35 35 H 1.09004 * 109.47289 * 304.70350 * 10 7 6 36 36 H 1.09006 * 109.47219 * 56.12099 * 12 11 10 37 37 H 1.08996 * 109.47043 * 296.12103 * 12 11 10 38 38 H 1.08999 * 109.47346 * 176.11504 * 12 11 10 39 39 H 1.09004 * 109.47366 * 179.97438 * 15 13 11 40 40 H 1.09000 * 109.46897 * 299.99970 * 15 13 11 41 41 H 1.09001 * 109.46890 * 59.99589 * 15 13 11 42 42 H 0.97002 * 120.00096 * 180.02562 * 19 18 16 43 43 H 1.07996 * 119.97109 * 179.70214 * 24 6 5 44 44 H 1.07993 * 120.02965 * 180.27519 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4314 1.2849 -0.0005 5 6 4.0561 2.5169 -0.0011 6 6 3.3019 3.6758 -0.0005 7 6 3.9860 5.0186 -0.0017 8 1 5.0666 4.8758 -0.0034 9 6 3.5763 5.8009 1.2477 10 6 3.5735 5.8001 -1.2507 11 7 4.3252 7.0607 -1.3101 12 6 3.7025 8.0012 -2.2512 13 6 5.7313 6.8193 -1.6601 14 1 6.1378 6.0405 -1.0149 15 6 5.8238 6.3717 -3.1202 16 6 6.5208 8.0892 -1.4730 17 1 6.0274 8.9859 -1.1282 18 6 7.8729 8.1064 -1.7420 19 7 8.4736 7.0146 -2.1624 20 14 8.8514 9.6807 -1.5108 21 1 8.7619 10.1155 -0.0937 22 1 10.2726 9.4370 -1.8656 23 1 8.2972 10.7416 -2.3899 24 6 1.9210 3.6048 0.0062 25 6 1.2915 2.3751 0.0011 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 4.0208 0.3800 -0.0003 30 1 5.1345 2.5751 -0.0019 31 1 2.5098 6.0218 1.2045 32 1 3.7882 5.2047 2.1353 33 1 4.1390 6.7332 1.2934 34 1 2.5058 6.0153 -1.2084 35 1 3.7895 5.2061 -2.1388 36 1 2.6624 8.1633 -1.9681 37 1 3.7446 7.5881 -3.2590 38 1 4.2382 8.9501 -2.2247 39 1 6.8672 6.1929 -3.3801 40 1 5.2528 5.4532 -3.2555 41 1 5.4173 7.1506 -3.7654 42 1 9.4250 7.0266 -2.3513 43 1 1.3342 4.5114 0.0114 44 1 0.2129 2.3201 0.0018 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000180056818.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:47 Heat of formation + Delta-G solvation = -29.052104 kcal Electronic energy + Delta-G solvation = -21839.076390 eV Core-core repulsion = 18756.031349 eV Total energy + Delta-G solvation = -3083.045041 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.14749 -39.60430 -38.31314 -35.34333 -34.11254 -31.98287 -30.66736 -29.91763 -27.92862 -27.88860 -27.18247 -25.29109 -24.16701 -23.10354 -21.62990 -20.11815 -19.07095 -18.25115 -17.26160 -16.97996 -16.59469 -16.55403 -15.83314 -15.72535 -15.42775 -14.78867 -14.74503 -14.51300 -14.36726 -13.93968 -13.82838 -13.38147 -13.23814 -13.17709 -12.86174 -12.75615 -12.70355 -12.54274 -12.42655 -12.09160 -12.06554 -12.02900 -11.77797 -11.62653 -11.50800 -11.23564 -10.83575 -10.42510 -9.92478 -9.00392 -8.75929 -8.06936 -6.17060 0.41914 0.48558 1.44170 1.45389 1.52849 2.41693 2.45388 2.81539 3.22128 3.44082 3.82254 3.97634 4.07566 4.12252 4.36737 4.40552 4.42853 4.48507 4.53362 4.61918 4.64047 4.72567 4.74052 4.76721 4.81704 4.87955 4.92724 5.01364 5.12207 5.17721 5.20335 5.23759 5.31974 5.37553 5.40887 5.55436 5.61409 5.74902 5.81275 5.84136 5.87795 6.27673 6.49227 6.55244 6.81043 6.97098 7.51986 8.98923 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.031353 B = 0.003699 C = 0.003573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.836831 B = 7566.787309 C = 7834.493483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.337 6.337 3 C 0.108 3.892 4 C -0.161 4.161 5 C -0.091 4.091 6 C -0.112 4.112 7 C -0.039 4.039 8 H 0.049 0.951 9 C -0.119 4.119 10 C 0.068 3.932 11 N -0.540 5.540 12 C 0.038 3.962 13 C 0.218 3.782 14 H 0.011 0.989 15 C -0.160 4.160 16 C -0.511 4.511 17 H 0.056 0.944 18 C 0.010 3.990 19 N -0.922 5.922 20 Si 0.956 3.044 21 H -0.273 1.273 22 H -0.287 1.287 23 H -0.272 1.272 24 C -0.076 4.076 25 C -0.203 4.203 26 H 0.065 0.935 27 H 0.063 0.937 28 H 0.118 0.882 29 H 0.135 0.865 30 H 0.123 0.877 31 H 0.065 0.935 32 H 0.049 0.951 33 H 0.049 0.951 34 H 0.082 0.918 35 H 0.014 0.986 36 H 0.074 0.926 37 H 0.014 0.986 38 H 0.054 0.946 39 H 0.059 0.941 40 H 0.019 0.981 41 H 0.032 0.968 42 H 0.260 0.740 43 H 0.141 0.859 44 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.885 -10.152 4.313 20.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.251 6.251 3 C 0.063 3.937 4 C -0.179 4.179 5 C -0.109 4.109 6 C -0.113 4.113 7 C -0.058 4.058 8 H 0.068 0.932 9 C -0.176 4.176 10 C -0.060 4.060 11 N -0.263 5.263 12 C -0.111 4.111 13 C 0.110 3.890 14 H 0.029 0.971 15 C -0.219 4.219 16 C -0.550 4.550 17 H 0.074 0.926 18 C -0.188 4.188 19 N -0.562 5.562 20 Si 0.782 3.218 21 H -0.198 1.198 22 H -0.212 1.212 23 H -0.197 1.197 24 C -0.094 4.094 25 C -0.221 4.221 26 H 0.084 0.916 27 H 0.081 0.919 28 H 0.136 0.864 29 H 0.153 0.847 30 H 0.141 0.859 31 H 0.084 0.916 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.100 0.900 35 H 0.032 0.968 36 H 0.092 0.908 37 H 0.033 0.967 38 H 0.073 0.927 39 H 0.078 0.922 40 H 0.038 0.962 41 H 0.051 0.949 42 H 0.069 0.931 43 H 0.158 0.842 44 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -16.656 -10.183 4.734 20.088 hybrid contribution 1.005 0.400 -0.953 1.441 sum -15.652 -9.783 3.781 18.841 Atomic orbital electron populations 1.23333 0.76523 1.05495 1.02255 1.86034 1.23447 1.26753 1.88883 1.19140 0.92356 0.84846 0.97344 1.20524 0.92105 0.98456 1.06825 1.21028 1.00070 0.91550 0.98272 1.19869 0.94371 0.94378 1.02661 1.19958 0.98490 0.91225 0.96152 0.93209 1.21566 1.01475 0.99348 0.95238 1.22104 0.97928 0.90350 0.95605 1.62230 1.02999 1.11239 1.49833 1.22214 0.98739 0.96655 0.93447 1.19017 0.84400 0.95134 0.90418 0.97103 1.22212 1.01712 0.97055 1.00906 1.21375 0.93312 0.97004 1.43304 0.92567 1.25671 0.98758 0.99127 0.95232 1.70011 1.10490 1.28822 1.46902 0.85644 0.77361 0.80150 0.78646 1.19806 1.21243 1.19742 1.20984 0.93406 0.97973 0.97016 1.21446 1.01076 0.91534 1.08038 0.91630 0.91860 0.86359 0.84708 0.85921 0.91563 0.93213 0.93147 0.89958 0.96771 0.90750 0.96738 0.92712 0.92195 0.96175 0.94913 0.93136 0.84165 0.82966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 113.37 1.11 1.34 16 2 O -0.34 -7.41 10.50 -92.45 -0.97 -8.38 16 3 C 0.11 2.66 6.69 22.51 0.15 2.81 16 4 C -0.16 -4.29 9.99 22.37 0.22 -4.07 16 5 C -0.09 -2.68 9.66 22.25 0.22 -2.46 16 6 C -0.11 -3.28 4.78 -19.85 -0.09 -3.38 16 7 C -0.04 -1.32 2.58 -11.54 -0.03 -1.35 16 8 H 0.05 2.01 6.20 -2.39 -0.01 1.99 16 9 C -0.12 -3.64 8.75 71.98 0.63 -3.01 16 10 C 0.07 2.41 4.01 86.30 0.35 2.76 16 11 N -0.54 -22.57 4.19 -901.48 -3.78 -26.34 16 12 C 0.04 1.42 8.78 127.69 1.12 2.54 16 13 C 0.22 11.00 2.21 44.17 0.10 11.10 16 14 H 0.01 0.63 6.36 -2.39 -0.02 0.61 16 15 C -0.16 -7.93 8.24 71.98 0.59 -7.33 16 16 C -0.51 -28.16 7.97 25.60 0.20 -27.96 16 17 H 0.06 3.08 7.10 -2.91 -0.02 3.06 16 18 C 0.01 0.57 5.30 84.65 0.45 1.02 16 19 N -0.92 -53.56 11.32 21.45 0.24 -53.32 16 20 Si 0.96 44.07 29.54 68.60 2.03 46.10 16 21 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 22 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 23 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 24 C -0.08 -1.84 8.80 22.26 0.20 -1.65 16 25 C -0.20 -4.41 9.04 22.37 0.20 -4.21 16 26 H 0.07 0.68 7.66 -2.39 -0.02 0.66 16 27 H 0.06 0.68 7.66 -2.39 -0.02 0.67 16 28 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.14 3.24 8.06 -2.91 -0.02 3.21 16 30 H 0.12 3.64 7.94 -2.91 -0.02 3.62 16 31 H 0.07 1.71 7.55 -2.39 -0.02 1.69 16 32 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.05 1.78 7.89 -2.39 -0.02 1.76 16 34 H 0.08 2.45 7.32 -2.39 -0.02 2.43 16 35 H 0.01 0.54 6.24 -2.38 -0.01 0.53 16 36 H 0.07 2.28 8.00 -2.38 -0.02 2.26 16 37 H 0.01 0.54 6.22 -2.39 -0.01 0.53 16 38 H 0.05 2.23 6.86 -2.39 -0.02 2.21 16 39 H 0.06 3.32 6.07 -2.38 -0.01 3.30 16 40 H 0.02 0.90 6.48 -2.39 -0.02 0.89 16 41 H 0.03 1.56 6.33 -2.39 -0.02 1.55 16 42 H 0.26 14.45 8.31 -92.71 -0.77 13.67 16 43 H 0.14 2.88 7.21 -2.91 -0.02 2.85 16 44 H 0.15 2.35 6.30 -2.91 -0.02 2.33 16 Total: -1.00 -62.96 341.52 3.91 -59.05 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: 0.97 Total: 16.75 kcal Atomic # 6 Polarization: -39.27 SS G_CDS: 5.42 Total: -33.85 kcal Atomic # 7 Polarization: -76.13 SS G_CDS: -3.53 Total: -79.66 kcal Atomic # 8 Polarization: -7.41 SS G_CDS: -0.97 Total: -8.38 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -62.96 3.91 -59.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180056818.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.997 kcal (2) G-P(sol) polarization free energy of solvation -62.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds