Wall clock time and date at job start Mon Mar 30 2020 01:50:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35899 * 117.00137 * 2 1 4 4 C 1.38739 * 120.05435 * 179.97438 * 3 2 1 5 5 C 1.38138 * 119.94284 * 179.97438 * 4 3 2 6 6 C 1.38266 * 120.05599 * 0.02562 * 5 4 3 7 7 C 1.50702 * 119.94522 * 179.97438 * 6 5 4 8 8 H 1.09000 * 109.46954 * 0.02562 * 7 6 5 9 9 C 1.52992 * 109.47194 * 240.00283 * 7 6 5 10 10 C 1.53002 * 109.47066 * 120.00318 * 7 6 5 11 11 N 1.46909 * 109.46901 * 295.48454 * 10 7 6 12 12 C 1.46908 * 110.99727 * 288.18697 * 11 10 7 13 13 C 1.46896 * 110.99644 * 164.23604 * 11 10 7 14 14 H 1.09007 * 109.47179 * 60.00099 * 13 11 10 15 15 C 1.52995 * 109.47067 * 299.99551 * 13 11 10 16 16 C 1.50707 * 109.46746 * 179.97438 * 13 11 10 17 17 H 1.07998 * 119.99875 * 0.02562 * 16 13 11 18 18 C 1.37873 * 119.99690 * 179.97438 * 16 13 11 19 19 N 1.31519 * 120.00248 * 0.02562 * 18 16 13 20 20 Si 1.86806 * 119.99934 * 179.97438 * 18 16 13 21 21 H 1.48501 * 109.46651 * 60.00085 * 20 18 16 22 22 H 1.48497 * 109.47088 * 179.97438 * 20 18 16 23 23 H 1.48492 * 109.46997 * 300.00490 * 20 18 16 24 24 C 1.38268 * 120.11060 * 0.27706 * 6 5 4 25 25 C 1.38145 * 120.05488 * 359.44568 * 24 6 5 26 26 H 1.09002 * 109.46771 * 59.99906 * 1 2 3 27 27 H 1.08999 * 109.47323 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47157 * 299.99997 * 1 2 3 29 29 H 1.08002 * 120.02478 * 359.96355 * 4 3 2 30 30 H 1.08000 * 119.97454 * 180.02562 * 5 4 3 31 31 H 1.08997 * 109.47413 * 54.67991 * 9 7 6 32 32 H 1.09012 * 109.46981 * 174.67694 * 9 7 6 33 33 H 1.09000 * 109.47579 * 294.67592 * 9 7 6 34 34 H 1.08992 * 109.46990 * 55.47951 * 10 7 6 35 35 H 1.08998 * 109.46795 * 175.48844 * 10 7 6 36 36 H 1.09001 * 109.46652 * 55.66538 * 12 11 10 37 37 H 1.08994 * 109.46640 * 175.66376 * 12 11 10 38 38 H 1.09003 * 109.47242 * 295.66468 * 12 11 10 39 39 H 1.09000 * 109.47364 * 60.00698 * 15 13 11 40 40 H 1.09007 * 109.46793 * 180.02562 * 15 13 11 41 41 H 1.08993 * 109.47275 * 299.99893 * 15 13 11 42 42 H 0.97001 * 119.99951 * 179.97438 * 19 18 16 43 43 H 1.08006 * 119.96853 * 179.70661 * 24 6 5 44 44 H 1.07999 * 120.02391 * 180.27610 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4314 1.2847 0.0005 5 6 4.0562 2.5168 0.0000 6 6 3.3020 3.6756 -0.0005 7 6 3.9862 5.0184 -0.0005 8 1 5.0668 4.8755 -0.0005 9 6 3.5747 5.8005 1.2483 10 6 3.5755 5.8000 -1.2501 11 7 4.0656 5.1029 -2.4468 12 6 5.5243 5.2280 -2.5685 13 6 3.3922 5.5956 -3.6557 14 1 3.5844 6.6626 -3.7695 15 6 1.8856 5.3590 -3.5326 16 6 3.9201 4.8594 -4.8601 17 1 4.6795 4.1011 -4.7394 18 6 3.4327 5.1533 -6.1159 19 7 2.5076 6.0764 -6.2629 20 14 4.0875 4.2412 -7.6089 21 1 3.8272 2.7874 -7.4542 22 1 3.4058 4.7384 -8.8309 23 1 5.5495 4.4724 -7.7282 24 6 1.9212 3.6047 0.0052 25 6 1.2916 2.3750 0.0000 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 4.0208 0.3798 0.0016 30 1 5.1346 2.5749 0.0000 31 1 3.7812 5.2025 2.1360 32 1 4.1406 6.7309 1.2973 33 1 2.5092 6.0254 1.2016 34 1 2.4889 5.8734 -1.2919 35 1 4.0062 6.8006 -1.2106 36 1 5.9975 4.8624 -1.6572 37 1 5.8696 4.6396 -3.4185 38 1 5.7878 6.2748 -2.7202 39 1 1.5041 5.8918 -2.6616 40 1 1.3860 5.7243 -4.4300 41 1 1.6935 4.2922 -3.4190 42 1 2.1650 6.2834 -7.1464 43 1 1.3343 4.5114 0.0096 44 1 0.2130 2.3202 0.0000 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000180056833.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:50 Heat of formation + Delta-G solvation = -28.694389 kcal Electronic energy + Delta-G solvation = -22325.437872 eV Core-core repulsion = 19242.408343 eV Total energy + Delta-G solvation = -3083.029529 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.05145 -39.49587 -38.05399 -35.48104 -34.03182 -31.88940 -31.01018 -30.01715 -28.37125 -27.89056 -26.47598 -25.09742 -23.94970 -23.00472 -21.48756 -20.53585 -19.01407 -18.32308 -17.40254 -16.91074 -16.55487 -16.33201 -15.91429 -15.55273 -15.33384 -15.15045 -14.66148 -14.40703 -14.21803 -13.92570 -13.68453 -13.59745 -13.23812 -13.00258 -12.92672 -12.71899 -12.67741 -12.61817 -12.45439 -12.03834 -12.00447 -11.92706 -11.77670 -11.61691 -11.53562 -11.12296 -10.83033 -10.48884 -9.77537 -8.86352 -8.78618 -8.09882 -6.20670 0.56638 0.65529 1.40890 1.42844 1.50067 2.42405 2.48581 2.96753 3.18114 3.43627 3.85611 3.98028 4.08949 4.21464 4.38329 4.41212 4.48639 4.53343 4.60681 4.62381 4.69505 4.72693 4.74655 4.78885 4.83280 4.92748 5.00996 5.05489 5.08366 5.13811 5.18252 5.26995 5.33409 5.40406 5.48618 5.54300 5.59230 5.75560 5.82616 5.92612 5.99586 6.29392 6.46844 6.57016 6.83420 6.95253 7.48236 8.95870 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.014797 B = 0.005612 C = 0.004699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.789456 B = 4987.781900 C = 5957.204569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.339 6.339 3 C 0.099 3.901 4 C -0.163 4.163 5 C -0.079 4.079 6 C -0.084 4.084 7 C -0.039 4.039 8 H 0.080 0.920 9 C -0.136 4.136 10 C 0.057 3.943 11 N -0.534 5.534 12 C 0.042 3.958 13 C 0.218 3.782 14 H -0.041 1.041 15 C -0.114 4.114 16 C -0.515 4.515 17 H 0.057 0.943 18 C 0.011 3.989 19 N -0.921 5.921 20 Si 0.955 3.045 21 H -0.275 1.275 22 H -0.284 1.284 23 H -0.271 1.271 24 C -0.083 4.083 25 C -0.211 4.211 26 H 0.052 0.948 27 H 0.119 0.881 28 H 0.065 0.935 29 H 0.133 0.867 30 H 0.136 0.864 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.056 0.944 34 H 0.067 0.933 35 H 0.022 0.978 36 H 0.077 0.923 37 H 0.054 0.946 38 H 0.002 0.998 39 H 0.030 0.970 40 H 0.056 0.944 41 H 0.024 0.976 42 H 0.260 0.740 43 H 0.124 0.876 44 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.266 -6.180 15.975 17.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.254 6.254 3 C 0.055 3.945 4 C -0.182 4.182 5 C -0.097 4.097 6 C -0.084 4.084 7 C -0.058 4.058 8 H 0.098 0.902 9 C -0.194 4.194 10 C -0.071 4.071 11 N -0.258 5.258 12 C -0.107 4.107 13 C 0.111 3.889 14 H -0.024 1.024 15 C -0.172 4.172 16 C -0.553 4.553 17 H 0.075 0.925 18 C -0.187 4.187 19 N -0.561 5.561 20 Si 0.781 3.219 21 H -0.200 1.200 22 H -0.209 1.209 23 H -0.196 1.196 24 C -0.101 4.101 25 C -0.229 4.229 26 H 0.071 0.929 27 H 0.138 0.862 28 H 0.084 0.916 29 H 0.151 0.849 30 H 0.154 0.846 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.075 0.925 34 H 0.085 0.915 35 H 0.040 0.960 36 H 0.095 0.905 37 H 0.072 0.928 38 H 0.021 0.979 39 H 0.049 0.951 40 H 0.075 0.925 41 H 0.043 0.957 42 H 0.070 0.930 43 H 0.142 0.858 44 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -1.412 -6.780 15.878 17.323 hybrid contribution 0.048 0.756 -1.427 1.616 sum -1.364 -6.024 14.451 15.716 Atomic orbital electron populations 1.23262 0.76975 1.05281 1.01826 1.85997 1.23078 1.27102 1.89177 1.19140 0.92730 0.84414 0.98231 1.20552 0.91625 0.99002 1.07025 1.20969 1.00236 0.90920 0.97618 1.19656 0.93399 0.94946 1.00385 1.20124 0.99839 0.91667 0.94154 0.90174 1.21772 1.01750 0.99822 0.96014 1.22294 1.00233 0.94170 0.90381 1.62027 1.04700 1.56475 1.02634 1.22202 0.88870 0.98079 1.01516 1.18991 0.91741 0.90926 0.87216 1.02393 1.21597 0.97903 0.98365 0.99302 1.21409 1.21738 1.20534 0.91667 0.92492 1.25680 0.95407 0.96070 1.01589 1.70014 1.29595 1.32999 1.23510 0.85652 0.78642 0.78869 0.78714 1.20048 1.20916 1.19582 1.20849 0.94481 0.97055 0.97685 1.21328 1.00530 0.92242 1.08827 0.92897 0.86248 0.91605 0.84892 0.84583 0.91431 0.91679 0.92455 0.91480 0.95997 0.90488 0.92761 0.97899 0.95124 0.92484 0.95678 0.93045 0.85806 0.84445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 9.81 113.37 1.11 1.51 16 2 O -0.34 -9.34 10.50 -92.41 -0.97 -10.31 16 3 C 0.10 2.97 6.69 22.51 0.15 3.12 16 4 C -0.16 -4.81 9.99 22.37 0.22 -4.58 16 5 C -0.08 -2.29 9.66 22.25 0.22 -2.08 16 6 C -0.08 -2.46 4.50 -19.85 -0.09 -2.55 16 7 C -0.04 -1.07 2.57 -11.54 -0.03 -1.10 16 8 H 0.08 2.09 6.25 -2.39 -0.01 2.08 16 9 C -0.14 -2.90 8.92 71.98 0.64 -2.26 16 10 C 0.06 2.00 4.12 86.30 0.36 2.35 16 11 N -0.53 -22.66 4.28 -901.43 -3.86 -26.52 16 12 C 0.04 1.62 9.07 127.69 1.16 2.78 16 13 C 0.22 11.29 2.06 44.17 0.09 11.38 16 14 H -0.04 -2.40 8.14 -2.38 -0.02 -2.42 16 15 C -0.11 -5.68 8.79 71.98 0.63 -5.05 16 16 C -0.52 -28.88 7.93 25.60 0.20 -28.67 16 17 H 0.06 3.19 6.39 -2.91 -0.02 3.17 16 18 C 0.01 0.61 5.30 84.65 0.45 1.06 16 19 N -0.92 -53.91 11.32 21.45 0.24 -53.66 16 20 Si 0.96 44.61 29.54 68.60 2.03 46.64 16 21 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 22 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 23 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 24 C -0.08 -2.43 8.70 22.25 0.19 -2.24 16 25 C -0.21 -6.01 9.04 22.36 0.20 -5.81 16 26 H 0.05 1.01 7.66 -2.39 -0.02 1.00 16 27 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.07 1.04 7.66 -2.38 -0.02 1.02 16 29 H 0.13 3.48 8.06 -2.91 -0.02 3.46 16 30 H 0.14 3.40 7.94 -2.91 -0.02 3.37 16 31 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 33 H 0.06 1.20 7.56 -2.39 -0.02 1.18 16 34 H 0.07 2.43 4.74 -2.39 -0.01 2.41 16 35 H 0.02 0.76 8.05 -2.39 -0.02 0.74 16 36 H 0.08 2.42 6.47 -2.39 -0.02 2.41 16 37 H 0.05 2.30 6.25 -2.39 -0.01 2.28 16 38 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 39 H 0.03 1.34 6.10 -2.39 -0.01 1.32 16 40 H 0.06 3.15 6.07 -2.38 -0.01 3.13 16 41 H 0.02 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 43 H 0.12 3.39 7.13 -2.91 -0.02 3.37 16 44 H 0.14 3.28 6.30 -2.91 -0.02 3.27 16 Total: -1.00 -64.70 343.92 3.92 -60.78 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: 0.97 Total: 15.21 kcal Atomic # 6 Polarization: -37.65 SS G_CDS: 5.51 Total: -32.14 kcal Atomic # 7 Polarization: -76.57 SS G_CDS: -3.62 Total: -80.19 kcal Atomic # 8 Polarization: -9.34 SS G_CDS: -0.97 Total: -10.31 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -64.70 3.92 -60.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180056833.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.090 kcal (2) G-P(sol) polarization free energy of solvation -64.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds