Wall clock time and date at job start Mon Mar 30 2020 01:47:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08990 * 109.47516 * 2 1 4 4 C 1.50707 * 109.46654 * 119.99979 * 2 1 3 5 5 H 1.07995 * 120.00358 * 120.00169 * 4 2 1 6 6 C 1.37877 * 119.99768 * 299.99729 * 4 2 1 7 7 N 1.31515 * 120.00203 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00034 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47238 * 60.00017 * 8 6 4 10 10 H 1.48494 * 109.47094 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.46981 * 299.99863 * 8 6 4 12 12 N 1.46902 * 109.47407 * 239.99296 * 2 1 3 13 13 C 1.46898 * 111.00283 * 183.95482 * 12 2 1 14 14 C 1.46906 * 110.99573 * 60.00340 * 12 2 1 15 15 C 1.52997 * 109.46848 * 189.99875 * 14 12 2 16 16 C 1.53006 * 109.46931 * 179.97438 * 15 14 12 17 17 O 1.42900 * 109.46882 * 180.02562 * 16 15 14 18 18 C 1.42898 * 113.99631 * 180.02562 * 17 16 15 19 19 C 1.50711 * 109.47113 * 179.97438 * 18 17 16 20 20 C 1.38231 * 119.99839 * 269.72646 * 19 18 17 21 21 C 1.38240 * 119.99897 * 179.76151 * 20 19 18 22 22 C 1.38236 * 119.99856 * 0.51111 * 21 20 19 23 23 C 1.38241 * 119.99588 * 359.74351 * 22 21 20 24 24 C 1.38226 * 119.99737 * 89.99561 * 19 18 17 25 25 H 1.09001 * 109.46892 * 60.00647 * 1 2 3 26 26 H 1.09003 * 109.47841 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47719 * 300.00655 * 1 2 3 28 28 H 0.96997 * 120.00560 * 179.97438 * 7 6 4 29 29 H 1.08997 * 109.47334 * 296.05250 * 13 12 2 30 30 H 1.09000 * 109.46674 * 56.05127 * 13 12 2 31 31 H 1.08995 * 109.47296 * 176.04950 * 13 12 2 32 32 H 1.08998 * 109.47121 * 309.99709 * 14 12 2 33 33 H 1.09000 * 109.47141 * 69.99907 * 14 12 2 34 34 H 1.08998 * 109.47584 * 300.00097 * 15 14 12 35 35 H 1.09005 * 109.46901 * 60.00396 * 15 14 12 36 36 H 1.08998 * 109.47207 * 299.99936 * 16 15 14 37 37 H 1.09000 * 109.46973 * 60.00084 * 16 15 14 38 38 H 1.09001 * 109.47488 * 299.99728 * 18 17 16 39 39 H 1.09001 * 109.47168 * 60.00302 * 18 17 16 40 40 H 1.08005 * 120.00360 * 0.02562 * 20 19 18 41 41 H 1.08002 * 120.00057 * 180.23109 * 21 20 19 42 42 H 1.07997 * 120.00080 * 179.71835 * 22 21 20 43 43 H 1.08005 * 119.99490 * 179.97438 * 23 22 21 44 44 H 1.08004 * 120.00353 * 0.02562 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0275 0.0000 4 6 2.0322 -0.7105 1.2306 5 1 2.6531 -1.5885 1.1316 6 6 1.6991 -0.2393 2.4828 7 7 0.9434 0.8303 2.6034 8 14 2.3221 -1.1194 4.0081 9 1 3.8071 -1.1190 4.0080 10 1 1.8265 -0.4198 5.2205 11 1 1.8275 -2.5196 4.0083 12 7 2.0197 -0.6926 -1.1993 13 6 3.4851 -0.7947 -1.1869 14 6 1.5487 -0.0265 -2.4211 15 6 1.8628 -0.9046 -3.6340 16 6 1.3717 -0.2111 -4.9064 17 8 1.6645 -1.0315 -6.0393 18 6 1.2451 -0.4723 -7.2856 19 6 1.6026 -1.4158 -8.4052 20 6 2.8266 -1.3054 -9.0378 21 6 3.1565 -2.1740 -10.0614 22 6 2.2581 -3.1462 -10.4593 23 6 1.0318 -3.2532 -9.8301 24 6 0.7041 -2.3881 -8.8030 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3635 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 0.7087 1.1616 3.4843 29 1 3.9192 0.2042 -1.2299 30 1 3.8068 -1.2917 -0.2717 31 1 3.8164 -1.3723 -2.0498 32 1 0.4723 0.1322 -2.3564 33 1 2.0519 0.9344 -2.5280 34 1 2.9392 -1.0634 -3.6987 35 1 1.3595 -1.8655 -3.5270 36 1 0.2952 -0.0527 -4.8415 37 1 1.8746 0.7500 -5.0136 38 1 0.1661 -0.3186 -7.2702 39 1 1.7461 0.4830 -7.4422 40 1 3.5271 -0.5432 -8.7296 41 1 4.1144 -2.0901 -10.5532 42 1 2.5140 -3.8219 -11.2620 43 1 0.3297 -4.0126 -10.1413 44 1 -0.2542 -2.4713 -8.3119 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000182463947.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:51 Heat of formation + Delta-G solvation = -21.334699 kcal Electronic energy + Delta-G solvation = -20602.463056 eV Core-core repulsion = 17519.752667 eV Total energy + Delta-G solvation = -3082.710389 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.58275 -37.97070 -36.99142 -33.43741 -32.35718 -31.13902 -31.06987 -29.01412 -26.77875 -25.73658 -24.42075 -23.31052 -22.82007 -21.60563 -20.80730 -19.27438 -17.13846 -16.54436 -16.32566 -16.15762 -15.65830 -15.30608 -14.96489 -14.35113 -14.18052 -13.65831 -13.63329 -13.37815 -13.15607 -12.92993 -12.44901 -12.34315 -11.95927 -11.66430 -11.31684 -11.25487 -11.15601 -11.05844 -10.89917 -10.75851 -10.64978 -10.20244 -10.07831 -10.00057 -9.73703 -9.59599 -9.15449 -9.07035 -8.84388 -8.40115 -7.14209 -5.99354 -4.03691 1.03098 1.16777 3.33642 3.35061 3.37704 3.41024 3.92296 4.42620 4.57885 4.61682 4.76597 4.87504 5.02591 5.09967 5.16064 5.19825 5.28488 5.33102 5.41462 5.44510 5.61896 5.72555 5.76507 5.80076 5.91668 6.13200 6.20004 6.25069 6.25555 6.36882 6.40603 6.52936 6.61338 6.73983 6.83647 6.87781 7.07336 7.16543 7.20200 7.54526 7.75532 7.84864 8.23450 8.34898 8.63365 9.02656 9.61090 11.07535 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.042335 B = 0.002426 C = 0.002389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.232154 B =11537.868301 C =11717.581481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.211 3.789 3 H -0.003 1.003 4 C -0.503 4.503 5 H 0.063 0.937 6 C 0.058 3.942 7 N -0.894 5.894 8 Si 0.897 3.103 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.276 1.276 12 N -0.537 5.537 13 C 0.035 3.965 14 C 0.054 3.946 15 C -0.112 4.112 16 C 0.064 3.936 17 O -0.381 6.381 18 C 0.101 3.899 19 C -0.087 4.087 20 C -0.099 4.099 21 C -0.125 4.125 22 C -0.118 4.118 23 C -0.124 4.124 24 C -0.099 4.099 25 H 0.008 0.992 26 H 0.034 0.966 27 H 0.085 0.915 28 H 0.261 0.739 29 H 0.009 0.991 30 H 0.076 0.924 31 H 0.045 0.955 32 H 0.074 0.926 33 H 0.020 0.980 34 H 0.067 0.933 35 H 0.075 0.925 36 H 0.049 0.951 37 H 0.046 0.954 38 H 0.057 0.943 39 H 0.056 0.944 40 H 0.123 0.877 41 H 0.122 0.878 42 H 0.121 0.879 43 H 0.123 0.877 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.842 -2.947 -23.883 24.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.106 3.894 3 H 0.015 0.985 4 C -0.542 4.542 5 H 0.081 0.919 6 C -0.143 4.143 7 N -0.534 5.534 8 Si 0.725 3.275 9 H -0.204 1.204 10 H -0.214 1.214 11 H -0.202 1.202 12 N -0.262 5.262 13 C -0.114 4.114 14 C -0.074 4.074 15 C -0.150 4.150 16 C -0.013 4.013 17 O -0.301 6.301 18 C 0.025 3.975 19 C -0.087 4.087 20 C -0.118 4.118 21 C -0.143 4.143 22 C -0.136 4.136 23 C -0.142 4.142 24 C -0.117 4.117 25 H 0.027 0.973 26 H 0.054 0.946 27 H 0.103 0.897 28 H 0.070 0.930 29 H 0.027 0.973 30 H 0.095 0.905 31 H 0.064 0.936 32 H 0.093 0.907 33 H 0.038 0.962 34 H 0.085 0.915 35 H 0.094 0.906 36 H 0.067 0.933 37 H 0.064 0.936 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.141 0.859 41 H 0.140 0.860 42 H 0.139 0.861 43 H 0.141 0.859 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 0.655 -3.469 -23.692 23.953 hybrid contribution 0.503 0.685 0.830 1.188 sum 1.157 -2.785 -22.862 23.060 Atomic orbital electron populations 1.21859 0.97771 0.99674 0.99823 1.19242 0.92321 0.91958 0.85928 0.98524 1.21131 1.31012 1.12258 0.89772 0.91873 1.24941 0.95248 0.95104 0.99033 1.69882 1.36970 1.23030 1.23489 0.86571 0.79061 0.79769 0.82058 1.20358 1.21390 1.20206 1.62087 1.09323 1.52709 1.02083 1.22259 0.88821 0.98712 1.01566 1.21991 1.00914 0.94222 0.90300 1.21524 1.01977 1.00281 0.91228 1.22558 0.99261 0.93634 0.85858 1.87969 1.82212 1.46248 1.13649 1.21280 0.98816 0.94474 0.82958 1.19665 0.94970 0.97582 0.96509 1.21094 0.95686 0.99216 0.95755 1.21153 0.99622 0.95824 0.97659 1.21195 0.94160 0.98327 0.99879 1.21160 0.97076 0.99331 0.96660 1.21102 0.99599 0.94361 0.96618 0.97312 0.94640 0.89665 0.92959 0.97271 0.90502 0.93610 0.90722 0.96217 0.91477 0.90581 0.93263 0.93571 0.92502 0.92599 0.85923 0.85954 0.86087 0.85925 0.85849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.29 8.76 37.15 0.33 -2.96 16 2 C 0.21 5.43 2.06 -68.86 -0.14 5.29 16 3 H 0.00 -0.08 8.14 -51.93 -0.42 -0.50 16 4 C -0.50 -13.93 7.88 -34.44 -0.27 -14.20 16 5 H 0.06 1.74 6.41 -52.49 -0.34 1.40 16 6 C 0.06 1.61 5.30 -17.82 -0.09 1.51 16 7 N -0.89 -25.66 11.32 55.43 0.63 -25.03 16 8 Si 0.90 21.47 29.54 -169.99 -5.02 16.45 16 9 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 10 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 12 N -0.54 -11.87 4.62 -236.29 -1.09 -12.97 16 13 C 0.03 0.71 9.04 60.06 0.54 1.25 16 14 C 0.05 1.00 4.77 -3.82 -0.02 0.98 16 15 C -0.11 -1.76 5.51 -26.73 -0.15 -1.91 16 16 C 0.06 0.84 5.94 37.16 0.22 1.06 16 17 O -0.38 -5.24 10.33 -35.23 -0.36 -5.61 16 18 C 0.10 1.08 6.06 36.01 0.22 1.30 16 19 C -0.09 -0.93 5.51 -104.62 -0.58 -1.51 16 20 C -0.10 -0.98 9.70 -39.58 -0.38 -1.36 16 21 C -0.12 -1.08 10.05 -39.58 -0.40 -1.48 16 22 C -0.12 -0.97 10.05 -39.58 -0.40 -1.37 16 23 C -0.12 -1.08 10.05 -39.58 -0.40 -1.48 16 24 C -0.10 -0.98 9.70 -39.59 -0.38 -1.36 16 25 H 0.01 0.18 6.20 -51.93 -0.32 -0.14 16 26 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.08 2.29 6.07 -51.93 -0.32 1.98 16 28 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 29 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 30 H 0.08 1.66 6.10 -51.93 -0.32 1.34 16 31 H 0.05 0.81 6.47 -51.93 -0.34 0.47 16 32 H 0.07 1.38 5.83 -51.93 -0.30 1.07 16 33 H 0.02 0.36 8.12 -51.93 -0.42 -0.06 16 34 H 0.07 1.07 6.55 -51.93 -0.34 0.73 16 35 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 36 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.06 0.54 8.09 -51.93 -0.42 0.12 16 39 H 0.06 0.52 8.08 -51.93 -0.42 0.10 16 40 H 0.12 1.05 8.06 -52.48 -0.42 0.63 16 41 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 42 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 43 H 0.12 0.80 8.06 -52.48 -0.42 0.38 16 44 H 0.12 1.07 8.06 -52.48 -0.42 0.65 16 LS Contribution 352.89 15.07 5.32 5.32 Total: -1.00 -30.08 352.89 -9.75 -39.83 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: -7.32 Total: -1.78 kcal Atomic # 6 Polarization: -14.32 SS G_CDS: -1.90 Total: -16.22 kcal Atomic # 7 Polarization: -37.53 SS G_CDS: -0.47 Total: -38.00 kcal Atomic # 8 Polarization: -5.24 SS G_CDS: -0.36 Total: -5.61 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.08 -9.75 -39.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182463947.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.499 kcal (2) G-P(sol) polarization free energy of solvation -30.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds