Wall clock time and date at job start Mon Mar 30 2020 01:47:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35901 * 116.99992 * 2 1 4 4 C 1.38762 * 120.05424 * 0.24570 * 3 2 1 5 5 C 1.38122 * 119.93676 * 180.31888 * 4 3 2 6 6 C 1.38283 * 120.06156 * 359.68747 * 5 4 3 7 7 C 1.38247 * 120.11118 * 0.02562 * 6 5 4 8 8 C 1.38173 * 120.05161 * 0.02562 * 7 6 5 9 9 C 1.50700 * 120.02491 * 179.97438 * 8 7 6 10 10 C 1.52998 * 109.47573 * 265.00618 * 9 8 7 11 11 C 1.52996 * 109.47549 * 180.02562 * 10 9 8 12 12 N 1.46899 * 109.47061 * 179.97438 * 11 10 9 13 13 C 1.46904 * 110.99924 * 293.95221 * 12 11 10 14 14 C 1.46903 * 110.99859 * 170.00020 * 12 11 10 15 15 H 1.09003 * 109.46808 * 310.00386 * 14 12 11 16 16 C 1.53000 * 109.47120 * 69.99981 * 14 12 11 17 17 C 1.50694 * 109.47066 * 190.00009 * 14 12 11 18 18 H 1.08000 * 120.00563 * 359.97438 * 17 14 12 19 19 C 1.37885 * 119.99902 * 180.02562 * 17 14 12 20 20 N 1.31516 * 119.99913 * 359.97438 * 19 17 14 21 21 Si 1.86798 * 119.99766 * 179.97438 * 19 17 14 22 22 H 1.48500 * 109.47353 * 269.99586 * 21 19 17 23 23 H 1.48501 * 109.47293 * 30.00037 * 21 19 17 24 24 H 1.48504 * 109.46680 * 149.99835 * 21 19 17 25 25 H 1.08997 * 109.46929 * 60.00065 * 1 2 3 26 26 H 1.08999 * 109.47187 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47125 * 300.00571 * 1 2 3 28 28 H 1.07990 * 120.02967 * 0.03331 * 4 3 2 29 29 H 1.08000 * 119.96744 * 179.70702 * 5 4 3 30 30 H 1.07994 * 119.94721 * 180.02562 * 6 5 4 31 31 H 1.07994 * 119.97610 * 180.02562 * 7 6 5 32 32 H 1.08999 * 109.47375 * 144.99969 * 9 8 7 33 33 H 1.09004 * 109.47245 * 25.00502 * 9 8 7 34 34 H 1.08999 * 109.47300 * 59.99305 * 10 9 8 35 35 H 1.09004 * 109.46741 * 300.00193 * 10 9 8 36 36 H 1.09006 * 109.46854 * 59.99619 * 11 10 9 37 37 H 1.09000 * 109.46744 * 299.99995 * 11 10 9 38 38 H 1.09000 * 109.47009 * 296.04906 * 13 12 11 39 39 H 1.08999 * 109.47192 * 56.05084 * 13 12 11 40 40 H 1.09002 * 109.46724 * 176.05243 * 13 12 11 41 41 H 1.08997 * 109.47359 * 180.02562 * 16 14 12 42 42 H 1.09007 * 109.47356 * 300.00024 * 16 14 12 43 43 H 1.09000 * 109.47156 * 59.99749 * 16 14 12 44 44 H 0.97001 * 119.99646 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 1.2914 2.3753 0.0052 5 6 1.9210 3.6047 -0.0015 6 6 3.3020 3.6758 -0.0068 7 6 4.0560 2.5171 -0.0059 8 6 3.4311 1.2848 -0.0003 9 6 4.2537 0.0221 0.0000 10 6 4.4217 -0.4777 -1.4363 11 6 5.2563 -1.7599 -1.4358 12 7 5.4169 -2.2401 -2.8148 13 6 4.1279 -2.6623 -3.3788 14 6 6.4025 -3.3273 -2.8822 15 1 7.3122 -3.0258 -2.3629 16 6 5.8269 -4.5794 -2.2174 17 6 6.7227 -3.6263 -4.3241 18 1 6.2420 -3.0652 -5.1117 19 6 7.6289 -4.6171 -4.6379 20 7 8.2140 -5.3008 -3.6789 21 14 8.0253 -4.9882 -6.4252 22 1 7.0920 -6.0250 -6.9343 23 1 7.8780 -3.7503 -7.2323 24 1 9.4211 -5.4842 -6.5299 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 0.2129 2.3204 0.0097 29 1 1.3341 4.5114 -0.0023 30 1 3.7923 4.6380 -0.0116 31 1 5.1344 2.5751 -0.0097 32 1 3.7489 -0.7403 0.5933 33 1 5.2340 0.2272 0.4302 34 1 4.9264 0.2847 -2.0296 35 1 3.4413 -0.6828 -1.8665 36 1 4.7509 -2.5221 -0.8426 37 1 6.2365 -1.5552 -1.0054 38 1 3.7469 -3.5147 -2.8163 39 1 3.4167 -1.8386 -3.3164 40 1 4.2636 -2.9469 -4.4222 41 1 6.5583 -5.3860 -2.2670 42 1 5.5952 -4.3631 -1.1744 43 1 4.9172 -4.8809 -2.7367 44 1 8.8512 -5.9981 -3.8997 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000182554332.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:46 Heat of formation + Delta-G solvation = -16.524964 kcal Electronic energy + Delta-G solvation = -21484.946862 eV Core-core repulsion = 18402.445039 eV Total energy + Delta-G solvation = -3082.501823 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.33041 -37.62324 -37.25806 -34.36793 -32.55980 -30.46781 -30.09520 -28.27593 -27.42468 -26.14179 -25.14512 -24.08281 -22.21174 -21.59780 -20.54555 -18.98324 -18.05689 -16.39087 -16.09032 -15.83567 -15.75093 -15.01404 -14.69520 -14.55625 -14.17020 -13.79543 -13.71027 -13.04047 -12.99526 -12.79708 -12.38794 -12.16931 -11.80089 -11.70980 -11.45311 -11.24562 -11.22782 -11.04562 -10.91460 -10.73884 -10.63022 -10.45257 -10.44267 -10.00044 -9.94880 -9.62006 -8.91761 -8.78551 -8.32305 -8.18417 -7.01374 -5.94478 -3.97559 1.23978 1.36287 3.19257 3.34820 3.41122 3.45858 3.67374 4.46845 4.63534 4.71026 4.89210 4.94580 4.97554 5.14018 5.23270 5.28246 5.33388 5.37376 5.47238 5.54680 5.72249 5.82525 5.92557 6.04349 6.16675 6.24892 6.28708 6.34923 6.39312 6.45194 6.52826 6.67478 6.75332 6.75663 6.79465 6.91346 7.00018 7.22124 7.31416 7.57385 7.79621 7.92886 8.23977 8.48282 8.70754 9.08996 9.67163 11.12719 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.028910 B = 0.003313 C = 0.003203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.291487 B = 8450.784416 C = 8739.151152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.309 6.309 3 C 0.128 3.872 4 C -0.209 4.209 5 C -0.091 4.091 6 C -0.157 4.157 7 C -0.080 4.080 8 C -0.102 4.102 9 C -0.072 4.072 10 C -0.105 4.105 11 C 0.057 3.943 12 N -0.536 5.536 13 C 0.034 3.966 14 C 0.210 3.790 15 H 0.037 0.963 16 C -0.171 4.171 17 C -0.496 4.496 18 H 0.062 0.938 19 C 0.056 3.944 20 N -0.896 5.896 21 Si 0.896 3.104 22 H -0.283 1.283 23 H -0.274 1.274 24 H -0.288 1.288 25 H 0.054 0.946 26 H 0.099 0.901 27 H 0.052 0.948 28 H 0.124 0.876 29 H 0.120 0.880 30 H 0.121 0.879 31 H 0.130 0.870 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.061 0.939 36 H 0.023 0.977 37 H 0.063 0.937 38 H 0.017 0.983 39 H 0.043 0.957 40 H 0.068 0.932 41 H 0.087 0.913 42 H 0.006 0.994 43 H 0.030 0.970 44 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.119 14.475 9.525 22.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.222 6.222 3 C 0.082 3.918 4 C -0.228 4.228 5 C -0.109 4.109 6 C -0.175 4.175 7 C -0.098 4.098 8 C -0.103 4.103 9 C -0.110 4.110 10 C -0.143 4.143 11 C -0.072 4.072 12 N -0.259 5.259 13 C -0.114 4.114 14 C 0.104 3.896 15 H 0.055 0.945 16 C -0.230 4.230 17 C -0.534 4.534 18 H 0.080 0.920 19 C -0.144 4.144 20 N -0.536 5.536 21 Si 0.724 3.276 22 H -0.209 1.209 23 H -0.199 1.199 24 H -0.214 1.214 25 H 0.072 0.928 26 H 0.117 0.883 27 H 0.071 0.929 28 H 0.142 0.858 29 H 0.138 0.862 30 H 0.139 0.861 31 H 0.147 0.853 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.079 0.921 36 H 0.041 0.959 37 H 0.082 0.918 38 H 0.035 0.965 39 H 0.062 0.938 40 H 0.087 0.913 41 H 0.105 0.895 42 H 0.025 0.975 43 H 0.049 0.951 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -13.715 14.518 9.251 22.010 hybrid contribution -0.405 -0.802 -0.429 0.995 sum -14.120 13.716 8.823 21.572 Atomic orbital electron populations 1.23042 0.78766 1.03938 1.01014 1.86139 1.20941 1.26673 1.88462 1.18894 0.91907 0.84212 0.96749 1.21195 0.99804 0.92479 1.09346 1.20869 0.94718 0.96776 0.98585 1.21034 0.93898 0.98371 1.04180 1.20966 1.00090 0.91010 0.97779 1.19390 0.90556 0.96299 1.04051 1.20460 0.98470 0.93543 0.98553 1.21544 1.00423 0.97778 0.94514 1.22014 0.98855 0.94856 0.91494 1.62319 1.08765 1.38410 1.16438 1.22240 0.91156 0.97306 1.00722 1.19305 0.89431 0.84430 0.96484 0.94503 1.22392 1.01092 1.04069 0.95492 1.21139 1.23452 1.17173 0.91672 0.92029 1.24938 0.96064 0.96152 0.97280 1.69894 1.28932 1.23396 1.31389 0.86534 0.77396 0.78466 0.85223 1.20894 1.19857 1.21351 0.92761 0.88251 0.92948 0.85764 0.86164 0.86067 0.85250 0.90952 0.91158 0.91622 0.92064 0.95918 0.91837 0.96492 0.93845 0.91344 0.89475 0.97503 0.95052 0.93110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.81 101.05 0.99 1.22 16 2 O -0.31 -3.89 9.64 -19.43 -0.19 -4.08 16 3 C 0.13 1.61 6.66 -39.22 -0.26 1.35 16 4 C -0.21 -2.23 9.04 -39.43 -0.36 -2.58 16 5 C -0.09 -0.90 10.04 -39.61 -0.40 -1.29 16 6 C -0.16 -1.59 10.04 -39.56 -0.40 -1.99 16 7 C -0.08 -0.92 9.68 -39.60 -0.38 -1.30 16 8 C -0.10 -1.33 5.15 -104.47 -0.54 -1.87 16 9 C -0.07 -0.99 5.06 -27.88 -0.14 -1.13 16 10 C -0.10 -1.68 5.13 -26.73 -0.14 -1.82 16 11 C 0.06 1.07 4.53 -3.83 -0.02 1.06 16 12 N -0.54 -12.02 4.70 -236.28 -1.11 -13.13 16 13 C 0.03 0.71 8.62 60.07 0.52 1.23 16 14 C 0.21 5.45 2.31 -68.87 -0.16 5.29 16 15 H 0.04 1.05 7.93 -51.93 -0.41 0.64 16 16 C -0.17 -4.29 8.22 37.16 0.31 -3.98 16 17 C -0.50 -13.92 7.97 -34.44 -0.27 -14.20 16 18 H 0.06 1.74 7.10 -52.49 -0.37 1.37 16 19 C 0.06 1.58 5.30 -17.82 -0.09 1.49 16 20 N -0.90 -26.01 11.32 55.43 0.63 -25.39 16 21 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 23 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 25 H 0.05 0.40 7.67 -51.93 -0.40 0.00 16 26 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.05 0.36 7.65 -51.93 -0.40 -0.04 16 28 H 0.12 1.04 6.30 -52.49 -0.33 0.71 16 29 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 30 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 31 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 32 H 0.07 1.02 7.70 -51.93 -0.40 0.62 16 33 H 0.07 0.88 8.05 -51.93 -0.42 0.47 16 34 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 35 H 0.06 1.02 6.47 -51.93 -0.34 0.69 16 36 H 0.02 0.44 7.06 -51.93 -0.37 0.07 16 37 H 0.06 1.21 7.93 -51.93 -0.41 0.80 16 38 H 0.02 0.35 6.21 -51.93 -0.32 0.02 16 39 H 0.04 0.79 6.30 -51.93 -0.33 0.46 16 40 H 0.07 1.49 6.86 -51.93 -0.36 1.14 16 41 H 0.09 2.39 6.07 -51.93 -0.32 2.07 16 42 H 0.01 0.14 6.91 -51.93 -0.36 -0.22 16 43 H 0.03 0.76 6.33 -51.93 -0.33 0.43 16 44 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 345.38 15.07 5.20 5.20 Total: -1.00 -30.53 345.38 -8.93 -39.46 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -7.10 Total: -0.25 kcal Atomic # 6 Polarization: -17.19 SS G_CDS: -1.34 Total: -18.53 kcal Atomic # 7 Polarization: -38.03 SS G_CDS: -0.48 Total: -38.52 kcal Atomic # 8 Polarization: -3.89 SS G_CDS: -0.19 Total: -4.08 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.53 -8.93 -39.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182554332.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.936 kcal (2) G-P(sol) polarization free energy of solvation -30.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds