Wall clock time and date at job start Mon Mar 30 2020 01:47:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35901 * 116.99992 * 2 1 4 4 C 1.38762 * 120.05424 * 0.24570 * 3 2 1 5 5 C 1.38122 * 119.93676 * 180.31888 * 4 3 2 6 6 C 1.38283 * 120.06156 * 359.68747 * 5 4 3 7 7 C 1.38247 * 120.11118 * 0.02562 * 6 5 4 8 8 C 1.38173 * 120.05161 * 0.02562 * 7 6 5 9 9 C 1.50700 * 120.02491 * 179.97438 * 8 7 6 10 10 C 1.52998 * 109.47573 * 265.00618 * 9 8 7 11 11 C 1.52996 * 109.47549 * 180.02562 * 10 9 8 12 12 N 1.46899 * 109.47061 * 179.97438 * 11 10 9 13 13 C 1.46904 * 110.99924 * 293.95221 * 12 11 10 14 14 C 1.46903 * 110.99859 * 170.00020 * 12 11 10 15 15 H 1.09003 * 109.46808 * 310.00386 * 14 12 11 16 16 C 1.53000 * 109.47120 * 69.99981 * 14 12 11 17 17 C 1.50694 * 109.47066 * 190.00009 * 14 12 11 18 18 H 1.08000 * 120.00563 * 359.97438 * 17 14 12 19 19 C 1.37885 * 119.99902 * 180.02562 * 17 14 12 20 20 N 1.31516 * 119.99913 * 359.97438 * 19 17 14 21 21 Si 1.86798 * 119.99766 * 179.97438 * 19 17 14 22 22 H 1.48500 * 109.47353 * 269.99586 * 21 19 17 23 23 H 1.48501 * 109.47293 * 30.00037 * 21 19 17 24 24 H 1.48504 * 109.46680 * 149.99835 * 21 19 17 25 25 H 1.08997 * 109.46929 * 60.00065 * 1 2 3 26 26 H 1.08999 * 109.47187 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47125 * 300.00571 * 1 2 3 28 28 H 1.07990 * 120.02967 * 0.03331 * 4 3 2 29 29 H 1.08000 * 119.96744 * 179.70702 * 5 4 3 30 30 H 1.07994 * 119.94721 * 180.02562 * 6 5 4 31 31 H 1.07994 * 119.97610 * 180.02562 * 7 6 5 32 32 H 1.08999 * 109.47375 * 144.99969 * 9 8 7 33 33 H 1.09004 * 109.47245 * 25.00502 * 9 8 7 34 34 H 1.08999 * 109.47300 * 59.99305 * 10 9 8 35 35 H 1.09004 * 109.46741 * 300.00193 * 10 9 8 36 36 H 1.09006 * 109.46854 * 59.99619 * 11 10 9 37 37 H 1.09000 * 109.46744 * 299.99995 * 11 10 9 38 38 H 1.09000 * 109.47009 * 296.04906 * 13 12 11 39 39 H 1.08999 * 109.47192 * 56.05084 * 13 12 11 40 40 H 1.09002 * 109.46724 * 176.05243 * 13 12 11 41 41 H 1.08997 * 109.47359 * 180.02562 * 16 14 12 42 42 H 1.09007 * 109.47356 * 300.00024 * 16 14 12 43 43 H 1.09000 * 109.47156 * 59.99749 * 16 14 12 44 44 H 0.97001 * 119.99646 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 1.2914 2.3753 0.0052 5 6 1.9210 3.6047 -0.0015 6 6 3.3020 3.6758 -0.0068 7 6 4.0560 2.5171 -0.0059 8 6 3.4311 1.2848 -0.0003 9 6 4.2537 0.0221 0.0000 10 6 4.4217 -0.4777 -1.4363 11 6 5.2563 -1.7599 -1.4358 12 7 5.4169 -2.2401 -2.8148 13 6 4.1279 -2.6623 -3.3788 14 6 6.4025 -3.3273 -2.8822 15 1 7.3122 -3.0258 -2.3629 16 6 5.8269 -4.5794 -2.2174 17 6 6.7227 -3.6263 -4.3241 18 1 6.2420 -3.0652 -5.1117 19 6 7.6289 -4.6171 -4.6379 20 7 8.2140 -5.3008 -3.6789 21 14 8.0253 -4.9882 -6.4252 22 1 7.0920 -6.0250 -6.9343 23 1 7.8780 -3.7503 -7.2323 24 1 9.4211 -5.4842 -6.5299 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 0.2129 2.3204 0.0097 29 1 1.3341 4.5114 -0.0023 30 1 3.7923 4.6380 -0.0116 31 1 5.1344 2.5751 -0.0097 32 1 3.7489 -0.7403 0.5933 33 1 5.2340 0.2272 0.4302 34 1 4.9264 0.2847 -2.0296 35 1 3.4413 -0.6828 -1.8665 36 1 4.7509 -2.5221 -0.8426 37 1 6.2365 -1.5552 -1.0054 38 1 3.7469 -3.5147 -2.8163 39 1 3.4167 -1.8386 -3.3164 40 1 4.2636 -2.9469 -4.4222 41 1 6.5583 -5.3860 -2.2670 42 1 5.5952 -4.3631 -1.1744 43 1 4.9172 -4.8809 -2.7367 44 1 8.8512 -5.9981 -3.8997 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000182554332.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:45 Heat of formation + Delta-G solvation = -33.852468 kcal Electronic energy + Delta-G solvation = -21485.698239 eV Core-core repulsion = 18402.445039 eV Total energy + Delta-G solvation = -3083.253200 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.15437 -39.16511 -38.29040 -35.75362 -34.38638 -31.76393 -30.97305 -29.98015 -28.20441 -27.58952 -27.24242 -25.55813 -23.00626 -22.90803 -21.74603 -20.82453 -18.85368 -18.20395 -17.25691 -17.00602 -16.65312 -16.53689 -16.12251 -15.92158 -15.40546 -15.21628 -14.80213 -14.47309 -14.19308 -14.13245 -13.79047 -13.46673 -13.13029 -12.93613 -12.84091 -12.72550 -12.58653 -12.51214 -12.40056 -12.24168 -12.12745 -12.02853 -11.96803 -11.78153 -11.44609 -11.28499 -10.87155 -10.48505 -9.73778 -9.03062 -8.82528 -8.09415 -6.20417 0.41923 0.54597 1.43020 1.43736 1.54988 2.44204 2.45846 2.84672 3.19235 3.43560 3.84359 3.91169 4.08510 4.20578 4.30543 4.39411 4.40023 4.47460 4.49317 4.55870 4.65247 4.71749 4.73135 4.74341 4.76078 4.79872 4.89317 4.92720 4.97738 5.13078 5.14761 5.21215 5.26546 5.43156 5.48464 5.53458 5.59416 5.67823 5.71690 5.81607 5.94213 6.22881 6.51415 6.52766 6.77741 6.93194 7.48829 8.96865 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.028910 B = 0.003313 C = 0.003203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.291487 B = 8450.784416 C = 8739.151152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.335 6.335 3 C 0.110 3.890 4 C -0.214 4.214 5 C -0.090 4.090 6 C -0.161 4.161 7 C -0.090 4.090 8 C -0.129 4.129 9 C -0.063 4.063 10 C -0.088 4.088 11 C 0.059 3.941 12 N -0.547 5.547 13 C 0.041 3.959 14 C 0.214 3.786 15 H 0.005 0.995 16 C -0.157 4.157 17 C -0.514 4.514 18 H 0.055 0.945 19 C 0.009 3.991 20 N -0.922 5.922 21 Si 0.961 3.039 22 H -0.275 1.275 23 H -0.270 1.270 24 H -0.283 1.283 25 H 0.062 0.938 26 H 0.110 0.890 27 H 0.067 0.933 28 H 0.145 0.855 29 H 0.149 0.851 30 H 0.145 0.855 31 H 0.138 0.862 32 H 0.064 0.936 33 H 0.077 0.923 34 H 0.059 0.941 35 H 0.055 0.945 36 H 0.021 0.979 37 H 0.058 0.942 38 H 0.016 0.984 39 H 0.068 0.932 40 H 0.053 0.947 41 H 0.061 0.939 42 H 0.022 0.978 43 H 0.032 0.968 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.489 16.019 9.306 24.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.249 6.249 3 C 0.065 3.935 4 C -0.233 4.233 5 C -0.108 4.108 6 C -0.179 4.179 7 C -0.108 4.108 8 C -0.130 4.130 9 C -0.101 4.101 10 C -0.126 4.126 11 C -0.069 4.069 12 N -0.270 5.270 13 C -0.107 4.107 14 C 0.106 3.894 15 H 0.023 0.977 16 C -0.216 4.216 17 C -0.553 4.553 18 H 0.073 0.927 19 C -0.189 4.189 20 N -0.563 5.563 21 Si 0.786 3.214 22 H -0.201 1.201 23 H -0.194 1.194 24 H -0.209 1.209 25 H 0.081 0.919 26 H 0.128 0.872 27 H 0.085 0.915 28 H 0.163 0.837 29 H 0.167 0.833 30 H 0.162 0.838 31 H 0.156 0.844 32 H 0.083 0.917 33 H 0.096 0.904 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.039 0.961 37 H 0.076 0.924 38 H 0.034 0.966 39 H 0.087 0.913 40 H 0.072 0.928 41 H 0.080 0.920 42 H 0.041 0.959 43 H 0.051 0.949 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -15.105 16.073 9.041 23.838 hybrid contribution -0.032 -1.221 -0.308 1.259 sum -15.137 14.852 8.732 22.934 Atomic orbital electron populations 1.23283 0.76921 1.05119 1.02140 1.86093 1.23025 1.27134 1.88633 1.19121 0.92081 0.84948 0.97333 1.21492 1.00921 0.92127 1.08713 1.21281 0.94930 0.97595 0.97006 1.21366 0.94311 0.98881 1.03341 1.21179 1.00822 0.91076 0.97704 1.19425 0.91020 0.96254 1.06266 1.20300 0.99103 0.94081 0.96567 1.21361 0.99085 0.95862 0.96252 1.22060 0.99202 0.96099 0.89528 1.62238 1.09089 1.37038 1.18658 1.22194 0.90715 0.98254 0.99572 1.19081 0.89341 0.85673 0.95273 0.97730 1.22190 1.00193 1.02792 0.96424 1.21384 1.23877 1.17463 0.92536 0.92672 1.25722 0.95824 0.95904 1.01437 1.70020 1.29229 1.23694 1.33312 0.85513 0.77287 0.78369 0.80192 1.20120 1.19421 1.20876 0.91890 0.87184 0.91470 0.83697 0.83310 0.83764 0.84425 0.91701 0.90442 0.92181 0.92630 0.96120 0.92372 0.96586 0.91299 0.92826 0.91978 0.95935 0.94863 0.92979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.81 113.37 1.11 1.41 16 2 O -0.33 -8.16 9.64 -92.43 -0.89 -9.05 16 3 C 0.11 2.67 6.66 22.51 0.15 2.82 16 4 C -0.21 -4.07 9.04 22.37 0.20 -3.87 16 5 C -0.09 -1.51 10.04 22.25 0.22 -1.29 16 6 C -0.16 -2.88 10.04 22.28 0.22 -2.66 16 7 C -0.09 -1.94 9.68 22.26 0.22 -1.73 16 8 C -0.13 -3.26 5.15 -19.77 -0.10 -3.36 16 9 C -0.06 -1.70 5.06 29.85 0.15 -1.55 16 10 C -0.09 -2.79 5.13 30.59 0.16 -2.63 16 11 C 0.06 2.26 4.53 86.30 0.39 2.65 16 12 N -0.55 -24.70 4.70 -901.46 -4.24 -28.94 16 13 C 0.04 1.68 8.62 127.69 1.10 2.78 16 14 C 0.21 11.32 2.31 44.17 0.10 11.42 16 15 H 0.00 0.28 7.93 -2.39 -0.02 0.26 16 16 C -0.16 -7.95 8.22 71.98 0.59 -7.36 16 17 C -0.51 -29.25 7.97 25.60 0.20 -29.05 16 18 H 0.06 3.14 7.10 -2.91 -0.02 3.12 16 19 C 0.01 0.52 5.30 84.66 0.45 0.97 16 20 N -0.92 -54.23 11.32 21.45 0.24 -53.99 16 21 Si 0.96 44.64 29.54 68.60 2.03 46.67 16 22 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 23 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 24 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 25 H 0.06 0.82 7.67 -2.39 -0.02 0.80 16 26 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.07 0.79 7.65 -2.39 -0.02 0.77 16 28 H 0.15 2.02 6.30 -2.92 -0.02 2.01 16 29 H 0.15 1.58 8.06 -2.91 -0.02 1.56 16 30 H 0.14 1.84 8.06 -2.91 -0.02 1.82 16 31 H 0.14 2.59 8.06 -2.91 -0.02 2.57 16 32 H 0.06 1.83 7.70 -2.39 -0.02 1.81 16 33 H 0.08 1.93 8.05 -2.39 -0.02 1.91 16 34 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.06 1.82 6.47 -2.39 -0.02 1.81 16 36 H 0.02 0.80 7.06 -2.38 -0.02 0.78 16 37 H 0.06 2.26 7.93 -2.39 -0.02 2.24 16 38 H 0.02 0.65 6.21 -2.39 -0.01 0.63 16 39 H 0.07 2.45 6.30 -2.39 -0.02 2.43 16 40 H 0.05 2.33 6.86 -2.39 -0.02 2.32 16 41 H 0.06 3.47 6.07 -2.39 -0.01 3.45 16 42 H 0.02 1.02 6.91 -2.38 -0.02 1.00 16 43 H 0.03 1.62 6.33 -2.39 -0.02 1.61 16 44 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 Total: -1.00 -65.48 345.38 3.28 -62.20 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: 0.97 Total: 14.54 kcal Atomic # 6 Polarization: -36.60 SS G_CDS: 5.17 Total: -31.43 kcal Atomic # 7 Polarization: -78.93 SS G_CDS: -4.00 Total: -82.93 kcal Atomic # 8 Polarization: -8.16 SS G_CDS: -0.89 Total: -9.05 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -65.48 3.28 -62.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182554332.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.352 kcal (2) G-P(sol) polarization free energy of solvation -65.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds