Wall clock time and date at job start Mon Mar 30 2020 02:25:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38120 * 120.39948 * 2 1 4 4 C 1.39628 * 118.33465 * 179.97438 * 3 2 1 5 5 N 1.38543 * 120.53136 * 179.97438 * 4 3 2 6 6 C 1.46502 * 120.00135 * 346.48969 * 5 4 3 7 7 C 1.50698 * 109.46884 * 265.63872 * 6 5 4 8 8 H 1.07999 * 120.00095 * 244.78644 * 7 6 5 9 9 C 1.37878 * 120.00362 * 64.78660 * 7 6 5 10 10 N 1.31517 * 119.99860 * 11.82071 * 9 7 6 11 11 Si 1.86798 * 120.00229 * 191.81967 * 9 7 6 12 12 H 1.48501 * 109.47051 * 60.00242 * 11 9 7 13 13 H 1.48508 * 109.47018 * 179.97438 * 11 9 7 14 14 H 1.48496 * 109.47253 * 299.99754 * 11 9 7 15 15 C 1.46495 * 119.99587 * 166.48594 * 5 4 3 16 16 C 1.52998 * 109.47375 * 270.00265 * 15 5 4 17 17 C 1.52997 * 109.47390 * 180.02562 * 16 15 5 18 18 C 1.52999 * 109.47108 * 174.99858 * 17 16 15 19 19 C 1.53004 * 109.46920 * 294.99480 * 17 16 15 20 20 N 1.32994 * 118.93526 * 0.25589 * 4 3 2 21 21 C 1.31751 * 120.68395 * 359.48873 * 20 4 3 22 22 C 1.50697 * 119.08359 * 180.26729 * 21 20 4 23 23 N 1.31789 * 121.83434 * 0.51905 * 21 20 4 24 24 H 1.09001 * 109.47138 * 89.99709 * 1 2 3 25 25 H 1.09001 * 109.47050 * 210.00346 * 1 2 3 26 26 H 1.08999 * 109.47447 * 329.99968 * 1 2 3 27 27 H 1.07999 * 120.83201 * 359.96008 * 3 2 1 28 28 H 1.08991 * 109.47015 * 145.63621 * 6 5 4 29 29 H 1.08995 * 109.46740 * 25.63664 * 6 5 4 30 30 H 0.97000 * 120.00431 * 180.02562 * 10 9 7 31 31 H 1.08999 * 109.47311 * 30.00522 * 15 5 4 32 32 H 1.09002 * 109.47102 * 149.99961 * 15 5 4 33 33 H 1.09004 * 109.46684 * 300.00276 * 16 15 5 34 34 H 1.09002 * 109.47254 * 59.99788 * 16 15 5 35 35 H 1.08997 * 109.47401 * 54.99242 * 17 16 15 36 36 H 1.09000 * 109.47344 * 60.00191 * 18 17 16 37 37 H 1.08999 * 109.47024 * 179.97438 * 18 17 16 38 38 H 1.08998 * 109.47131 * 299.99621 * 18 17 16 39 39 H 1.09008 * 109.46644 * 60.00217 * 19 17 16 40 40 H 1.08995 * 109.47030 * 179.97438 * 19 17 16 41 41 H 1.08998 * 109.47433 * 300.00605 * 19 17 16 42 42 H 1.08998 * 109.47374 * 270.25146 * 22 21 20 43 43 H 1.09004 * 109.47304 * 30.25004 * 22 21 20 44 44 H 1.09005 * 109.47455 * 150.24851 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2059 1.1913 0.0000 4 6 3.6013 1.1410 0.0005 5 7 4.3476 2.3082 0.0000 6 6 3.7030 3.5897 -0.2975 7 6 3.8561 3.9004 -1.7641 8 1 4.4372 4.7552 -2.0773 9 6 3.2542 3.0935 -2.7063 10 7 2.3640 2.1996 -2.3343 11 14 3.7031 3.2697 -4.5109 12 1 5.1540 3.0073 -4.6880 13 1 2.9225 2.2935 -5.3128 14 1 3.3900 4.6480 -4.9665 15 6 5.7813 2.2609 0.2971 16 6 5.9960 2.4269 1.8028 17 6 7.4934 2.3781 2.1130 18 6 7.7162 2.6680 3.5986 19 6 8.0387 0.9885 1.7772 20 7 4.2024 -0.0453 -0.0041 21 6 3.4955 -1.1572 0.0009 22 6 4.2140 -2.4819 0.0014 23 7 2.1777 -1.1432 0.0005 24 1 -0.3633 0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3634 0.8900 0.5138 27 1 1.6861 2.1380 -0.0006 28 1 4.1720 4.3777 0.2917 29 1 2.6439 3.5304 -0.0472 30 1 1.9409 1.6316 -2.9971 31 1 6.1875 1.3018 -0.0243 32 1 6.2891 3.0665 -0.2333 33 1 5.5898 3.3860 2.1241 34 1 5.4883 1.6212 2.3332 35 1 8.0130 3.1265 1.5147 36 1 7.1968 1.9195 4.1969 37 1 8.7830 2.6328 3.8197 38 1 7.3278 3.6580 3.8378 39 1 7.8800 0.7819 0.7187 40 1 9.1056 0.9538 1.9978 41 1 7.5191 0.2399 2.3754 42 1 4.3876 -2.8015 -1.0261 43 1 5.1694 -2.3769 0.5156 44 1 3.6047 -3.2255 0.5152 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000189532542.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:50 Heat of formation + Delta-G solvation = 30.419402 kcal Electronic energy + Delta-G solvation = -22686.387414 eV Core-core repulsion = 19638.214002 eV Total energy + Delta-G solvation = -3048.173412 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.80184 -37.19671 -35.41408 -33.39984 -32.53220 -31.22006 -29.07983 -28.32634 -27.08382 -26.97419 -26.29231 -23.23405 -22.76416 -20.88606 -19.90840 -19.54018 -16.70467 -16.39927 -15.73946 -14.89898 -14.78266 -14.49125 -14.06799 -13.91009 -13.60154 -13.35117 -12.98302 -12.75831 -12.69283 -12.28610 -12.15113 -12.03331 -11.76407 -11.74912 -11.61922 -11.47199 -11.34816 -11.03295 -10.90565 -10.82958 -10.63246 -10.39072 -10.11608 -9.93394 -9.68696 -9.52694 -9.33628 -8.62547 -8.34468 -8.01463 -6.44539 -6.15223 -4.30458 2.32984 2.63471 3.20344 3.28154 3.29976 4.11031 4.28855 4.94837 5.02526 5.11884 5.15128 5.19858 5.22568 5.35165 5.71722 5.77270 5.84881 5.91194 5.97930 5.98811 6.06372 6.08294 6.09927 6.18778 6.22481 6.23835 6.27686 6.35677 6.41245 6.47238 6.48080 6.59394 6.67313 6.73563 6.79632 6.92174 7.02015 7.23429 7.59582 7.65880 8.03435 8.05001 8.58223 8.72511 8.80888 9.38217 9.50617 10.78525 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.011422 B = 0.007985 C = 0.005704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2450.764822 B = 3505.825396 C = 4907.435933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.147 3.853 3 C -0.182 4.182 4 C 0.462 3.538 5 N -0.576 5.576 6 C 0.239 3.761 7 C -0.546 4.546 8 H 0.058 0.942 9 C 0.082 3.918 10 N -0.857 5.857 11 Si 0.890 3.110 12 H -0.277 1.277 13 H -0.287 1.287 14 H -0.276 1.276 15 C 0.128 3.872 16 C -0.125 4.125 17 C -0.093 4.093 18 C -0.144 4.144 19 C -0.145 4.145 20 N -0.596 5.596 21 C 0.322 3.678 22 C -0.071 4.071 23 N -0.579 5.579 24 H 0.070 0.930 25 H 0.062 0.938 26 H 0.065 0.935 27 H 0.137 0.863 28 H 0.027 0.973 29 H 0.046 0.954 30 H 0.265 0.735 31 H 0.076 0.924 32 H 0.063 0.937 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.067 0.933 36 H 0.051 0.949 37 H 0.049 0.951 38 H 0.051 0.949 39 H 0.061 0.939 40 H 0.046 0.954 41 H 0.052 0.948 42 H 0.069 0.931 43 H 0.071 0.929 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.053 -2.657 7.755 9.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.009 3.991 3 C -0.210 4.210 4 C 0.218 3.782 5 N -0.287 5.287 6 C 0.120 3.880 7 C -0.585 4.585 8 H 0.076 0.924 9 C -0.125 4.125 10 N -0.491 5.491 11 Si 0.718 3.282 12 H -0.202 1.202 13 H -0.213 1.213 14 H -0.201 1.201 15 C 0.003 3.997 16 C -0.165 4.165 17 C -0.113 4.113 18 C -0.201 4.201 19 C -0.202 4.202 20 N -0.323 5.323 21 C 0.051 3.949 22 C -0.129 4.129 23 N -0.302 5.302 24 H 0.089 0.911 25 H 0.081 0.919 26 H 0.084 0.916 27 H 0.155 0.845 28 H 0.046 0.954 29 H 0.064 0.936 30 H 0.075 0.925 31 H 0.094 0.906 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.086 0.914 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.070 0.930 39 H 0.080 0.920 40 H 0.065 0.935 41 H 0.071 0.929 42 H 0.088 0.912 43 H 0.090 0.910 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.415 -3.387 7.667 9.473 hybrid contribution -0.138 0.915 -1.411 1.687 sum 4.276 -2.472 6.256 7.971 Atomic orbital electron populations 1.20469 0.89947 1.01700 1.02258 1.20892 0.95999 0.88199 0.94035 1.21735 0.93717 0.99608 1.05937 1.18427 0.88393 0.85890 0.85506 1.47596 1.06602 1.04823 1.69673 1.19306 0.94137 0.79661 0.94871 1.21428 1.33104 1.12388 0.91562 0.92362 1.25008 0.93534 0.94818 0.99123 1.69894 1.24001 1.21232 1.33996 0.86693 0.78845 0.77889 0.84819 1.20226 1.21267 1.20095 1.21206 0.83063 1.02287 0.93093 1.22042 0.94716 1.01428 0.98273 1.21048 0.96417 0.97694 0.96100 1.21822 1.00804 1.01233 0.96271 1.21852 0.99614 0.96540 1.02234 1.67620 1.41478 0.97749 1.25498 1.22311 0.86751 0.93218 0.92592 1.20301 0.99124 0.91160 1.02357 1.67778 1.09209 1.30433 1.22767 0.91136 0.91858 0.91570 0.84490 0.95421 0.93616 0.92515 0.90573 0.91842 0.92538 0.92468 0.91436 0.92990 0.93172 0.92977 0.92037 0.93532 0.92872 0.91223 0.91004 0.90975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.48 10.21 36.00 0.37 -1.12 16 2 C 0.15 3.16 6.81 -82.33 -0.56 2.60 16 3 C -0.18 -4.19 6.36 -39.11 -0.25 -4.43 16 4 C 0.46 10.86 6.46 -154.77 -1.00 9.86 16 5 N -0.58 -12.99 2.50 -175.04 -0.44 -13.42 16 6 C 0.24 5.57 5.53 -5.19 -0.03 5.54 16 7 C -0.55 -14.07 9.40 -34.44 -0.32 -14.39 16 8 H 0.06 1.49 7.84 -52.49 -0.41 1.08 16 9 C 0.08 2.14 5.34 -17.82 -0.10 2.04 16 10 N -0.86 -22.75 9.03 55.43 0.50 -22.25 16 11 Si 0.89 20.95 29.55 -169.99 -5.02 15.92 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 13 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 14 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 15 C 0.13 2.49 5.32 -4.05 -0.02 2.47 16 16 C -0.13 -2.04 5.01 -26.73 -0.13 -2.17 16 17 C -0.09 -1.25 2.92 -90.62 -0.26 -1.51 16 18 C -0.14 -1.66 9.19 37.16 0.34 -1.32 16 19 C -0.15 -1.89 8.95 37.16 0.33 -1.56 16 20 N -0.60 -13.62 9.14 -9.96 -0.09 -13.71 16 21 C 0.32 6.89 7.64 -157.24 -1.20 5.69 16 22 C -0.07 -1.16 10.32 36.00 0.37 -0.78 16 23 N -0.58 -12.67 10.27 -7.07 -0.07 -12.74 16 24 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 25 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 26 H 0.07 1.03 8.09 -51.93 -0.42 0.61 16 27 H 0.14 3.24 5.68 -52.49 -0.30 2.95 16 28 H 0.03 0.59 8.10 -51.93 -0.42 0.17 16 29 H 0.05 1.11 5.66 -51.93 -0.29 0.81 16 30 H 0.26 7.07 8.31 -40.82 -0.34 6.74 16 31 H 0.08 1.55 5.68 -51.93 -0.30 1.25 16 32 H 0.06 1.24 8.07 -51.93 -0.42 0.82 16 33 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 35 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.87 6.57 -51.92 -0.34 0.53 16 40 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 351.14 15.07 5.29 5.29 Total: -1.00 -28.18 351.14 -9.83 -38.01 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -7.53 Total: 1.99 kcal Atomic # 6 Polarization: 3.38 SS G_CDS: -2.47 Total: 0.91 kcal Atomic # 7 Polarization: -62.02 SS G_CDS: -0.10 Total: -62.13 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -28.18 -9.83 -38.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189532542.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.429 kcal (2) G-P(sol) polarization free energy of solvation -28.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds