Wall clock time and date at job start Mon Mar 30 2020 02:25:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38120 * 120.39948 * 2 1 4 4 C 1.39628 * 118.33465 * 179.97438 * 3 2 1 5 5 N 1.38543 * 120.53136 * 179.97438 * 4 3 2 6 6 C 1.46502 * 120.00135 * 346.48969 * 5 4 3 7 7 C 1.50698 * 109.46884 * 265.63872 * 6 5 4 8 8 H 1.07999 * 120.00095 * 244.78644 * 7 6 5 9 9 C 1.37878 * 120.00362 * 64.78660 * 7 6 5 10 10 N 1.31517 * 119.99860 * 11.82071 * 9 7 6 11 11 Si 1.86798 * 120.00229 * 191.81967 * 9 7 6 12 12 H 1.48501 * 109.47051 * 60.00242 * 11 9 7 13 13 H 1.48508 * 109.47018 * 179.97438 * 11 9 7 14 14 H 1.48496 * 109.47253 * 299.99754 * 11 9 7 15 15 C 1.46495 * 119.99587 * 166.48594 * 5 4 3 16 16 C 1.52998 * 109.47375 * 270.00265 * 15 5 4 17 17 C 1.52997 * 109.47390 * 180.02562 * 16 15 5 18 18 C 1.52999 * 109.47108 * 174.99858 * 17 16 15 19 19 C 1.53004 * 109.46920 * 294.99480 * 17 16 15 20 20 N 1.32994 * 118.93526 * 0.25589 * 4 3 2 21 21 C 1.31751 * 120.68395 * 359.48873 * 20 4 3 22 22 C 1.50697 * 119.08359 * 180.26729 * 21 20 4 23 23 N 1.31789 * 121.83434 * 0.51905 * 21 20 4 24 24 H 1.09001 * 109.47138 * 89.99709 * 1 2 3 25 25 H 1.09001 * 109.47050 * 210.00346 * 1 2 3 26 26 H 1.08999 * 109.47447 * 329.99968 * 1 2 3 27 27 H 1.07999 * 120.83201 * 359.96008 * 3 2 1 28 28 H 1.08991 * 109.47015 * 145.63621 * 6 5 4 29 29 H 1.08995 * 109.46740 * 25.63664 * 6 5 4 30 30 H 0.97000 * 120.00431 * 180.02562 * 10 9 7 31 31 H 1.08999 * 109.47311 * 30.00522 * 15 5 4 32 32 H 1.09002 * 109.47102 * 149.99961 * 15 5 4 33 33 H 1.09004 * 109.46684 * 300.00276 * 16 15 5 34 34 H 1.09002 * 109.47254 * 59.99788 * 16 15 5 35 35 H 1.08997 * 109.47401 * 54.99242 * 17 16 15 36 36 H 1.09000 * 109.47344 * 60.00191 * 18 17 16 37 37 H 1.08999 * 109.47024 * 179.97438 * 18 17 16 38 38 H 1.08998 * 109.47131 * 299.99621 * 18 17 16 39 39 H 1.09008 * 109.46644 * 60.00217 * 19 17 16 40 40 H 1.08995 * 109.47030 * 179.97438 * 19 17 16 41 41 H 1.08998 * 109.47433 * 300.00605 * 19 17 16 42 42 H 1.08998 * 109.47374 * 270.25146 * 22 21 20 43 43 H 1.09004 * 109.47304 * 30.25004 * 22 21 20 44 44 H 1.09005 * 109.47455 * 150.24851 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2059 1.1913 0.0000 4 6 3.6013 1.1410 0.0005 5 7 4.3476 2.3082 0.0000 6 6 3.7030 3.5897 -0.2975 7 6 3.8561 3.9004 -1.7641 8 1 4.4372 4.7552 -2.0773 9 6 3.2542 3.0935 -2.7063 10 7 2.3640 2.1996 -2.3343 11 14 3.7031 3.2697 -4.5109 12 1 5.1540 3.0073 -4.6880 13 1 2.9225 2.2935 -5.3128 14 1 3.3900 4.6480 -4.9665 15 6 5.7813 2.2609 0.2971 16 6 5.9960 2.4269 1.8028 17 6 7.4934 2.3781 2.1130 18 6 7.7162 2.6680 3.5986 19 6 8.0387 0.9885 1.7772 20 7 4.2024 -0.0453 -0.0041 21 6 3.4955 -1.1572 0.0009 22 6 4.2140 -2.4819 0.0014 23 7 2.1777 -1.1432 0.0005 24 1 -0.3633 0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3634 0.8900 0.5138 27 1 1.6861 2.1380 -0.0006 28 1 4.1720 4.3777 0.2917 29 1 2.6439 3.5304 -0.0472 30 1 1.9409 1.6316 -2.9971 31 1 6.1875 1.3018 -0.0243 32 1 6.2891 3.0665 -0.2333 33 1 5.5898 3.3860 2.1241 34 1 5.4883 1.6212 2.3332 35 1 8.0130 3.1265 1.5147 36 1 7.1968 1.9195 4.1969 37 1 8.7830 2.6328 3.8197 38 1 7.3278 3.6580 3.8378 39 1 7.8800 0.7819 0.7187 40 1 9.1056 0.9538 1.9978 41 1 7.5191 0.2399 2.3754 42 1 4.3876 -2.8015 -1.0261 43 1 5.1694 -2.3769 0.5156 44 1 3.6047 -3.2255 0.5152 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000189532542.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:50 Heat of formation + Delta-G solvation = 17.876130 kcal Electronic energy + Delta-G solvation = -22686.931331 eV Core-core repulsion = 19638.214002 eV Total energy + Delta-G solvation = -3048.717329 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.48586 -38.68898 -36.84130 -35.07572 -34.36525 -32.84085 -30.65860 -29.77112 -28.80980 -27.98840 -27.86056 -25.09247 -24.25832 -22.50139 -21.49169 -20.80493 -18.52876 -18.16808 -17.48577 -16.70502 -16.15666 -16.02424 -15.71284 -15.45239 -15.03643 -14.79785 -14.54025 -14.23729 -14.06004 -13.78402 -13.60872 -13.40589 -13.18868 -13.08971 -12.99153 -12.91553 -12.87170 -12.71398 -12.64879 -12.12975 -12.03125 -11.66403 -11.62833 -11.49465 -11.37322 -11.24250 -11.06534 -10.60801 -10.05609 -9.73696 -8.24314 -8.08616 -6.33390 0.63757 0.90358 1.32035 1.36423 1.40735 2.33677 2.40248 3.18693 3.33181 3.50705 3.71466 3.96709 4.06232 4.12858 4.26577 4.44556 4.56869 4.64817 4.73831 4.78685 4.79344 4.80740 4.83791 4.85148 4.87115 4.90627 4.94307 4.99615 5.06560 5.11233 5.15559 5.19857 5.28050 5.35312 5.38848 5.39131 5.52265 5.55230 5.60955 5.96158 6.07829 6.29735 6.65924 6.95308 7.01256 7.36298 7.79335 8.75662 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.011422 B = 0.007985 C = 0.005704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2450.764822 B = 3505.825396 C = 4907.435933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.143 3.857 3 C -0.202 4.202 4 C 0.445 3.555 5 N -0.583 5.583 6 C 0.245 3.755 7 C -0.562 4.562 8 H 0.055 0.945 9 C 0.043 3.957 10 N -0.866 5.866 11 Si 0.939 3.061 12 H -0.282 1.282 13 H -0.291 1.291 14 H -0.265 1.265 15 C 0.130 3.870 16 C -0.110 4.110 17 C -0.091 4.091 18 C -0.139 4.139 19 C -0.141 4.141 20 N -0.609 5.609 21 C 0.308 3.692 22 C -0.065 4.065 23 N -0.587 5.587 24 H 0.072 0.928 25 H 0.081 0.919 26 H 0.080 0.920 27 H 0.124 0.876 28 H 0.043 0.957 29 H 0.032 0.968 30 H 0.256 0.744 31 H 0.066 0.934 32 H 0.059 0.941 33 H 0.055 0.945 34 H 0.041 0.959 35 H 0.073 0.927 36 H 0.049 0.951 37 H 0.068 0.932 38 H 0.055 0.945 39 H 0.044 0.956 40 H 0.068 0.932 41 H 0.047 0.953 42 H 0.079 0.921 43 H 0.084 0.916 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.859 -3.200 8.310 10.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.005 3.995 3 C -0.230 4.230 4 C 0.202 3.798 5 N -0.294 5.294 6 C 0.125 3.875 7 C -0.601 4.601 8 H 0.073 0.927 9 C -0.162 4.162 10 N -0.501 5.501 11 Si 0.766 3.234 12 H -0.208 1.208 13 H -0.217 1.217 14 H -0.190 1.190 15 C 0.006 3.994 16 C -0.150 4.150 17 C -0.110 4.110 18 C -0.197 4.197 19 C -0.199 4.199 20 N -0.337 5.337 21 C 0.038 3.962 22 C -0.124 4.124 23 N -0.311 5.311 24 H 0.091 0.909 25 H 0.100 0.900 26 H 0.099 0.901 27 H 0.142 0.858 28 H 0.061 0.939 29 H 0.050 0.950 30 H 0.066 0.934 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.060 0.940 35 H 0.091 0.909 36 H 0.068 0.932 37 H 0.087 0.913 38 H 0.074 0.926 39 H 0.063 0.937 40 H 0.087 0.913 41 H 0.066 0.934 42 H 0.098 0.902 43 H 0.103 0.897 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 5.237 -3.923 8.232 10.516 hybrid contribution -0.389 1.061 -1.562 1.928 sum 4.848 -2.862 6.670 8.728 Atomic orbital electron populations 1.20527 0.87131 1.03386 1.02807 1.21536 0.97999 0.87714 0.92280 1.21689 0.93772 0.99654 1.07904 1.18661 0.88881 0.86412 0.85853 1.47491 1.07654 1.04356 1.69867 1.19144 0.93738 0.80531 0.94062 1.21670 1.33045 1.12458 0.92883 0.92660 1.25571 0.93730 0.94953 1.01943 1.70070 1.24420 1.21506 1.34078 0.85917 0.77917 0.78072 0.81505 1.20807 1.21745 1.19016 1.21298 0.81328 1.01511 0.95223 1.21883 0.96930 1.00645 0.95495 1.21046 0.94016 0.98170 0.97729 1.21777 1.02098 1.01338 0.94453 1.21811 1.00961 0.96072 1.01014 1.67712 1.41799 0.97943 1.26224 1.23321 0.87157 0.94562 0.91149 1.20416 0.99556 0.88970 1.03425 1.67940 1.09507 1.30298 1.23311 0.90946 0.89975 0.90102 0.85850 0.93878 0.94969 0.93434 0.91591 0.92209 0.92586 0.94038 0.90875 0.93195 0.91280 0.92620 0.93673 0.91332 0.93400 0.90248 0.89690 0.89007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.71 10.21 71.23 0.73 -1.98 16 2 C 0.14 6.14 6.81 42.42 0.29 6.43 16 3 C -0.20 -9.45 6.36 22.58 0.14 -9.31 16 4 C 0.45 21.25 6.46 133.16 0.86 22.11 16 5 N -0.58 -26.65 2.50 -707.70 -1.77 -28.42 16 6 C 0.24 11.59 5.53 85.63 0.47 12.06 16 7 C -0.56 -29.17 9.40 25.60 0.24 -28.93 16 8 H 0.06 2.84 7.84 -2.91 -0.02 2.81 16 9 C 0.04 2.24 5.34 84.65 0.45 2.70 16 10 N -0.87 -46.57 9.03 21.45 0.19 -46.38 16 11 Si 0.94 43.13 29.55 68.60 2.03 45.16 16 12 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 13 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 14 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 15 C 0.13 5.08 5.32 86.38 0.46 5.54 16 16 C -0.11 -3.55 5.01 30.59 0.15 -3.39 16 17 C -0.09 -2.28 2.92 -10.79 -0.03 -2.31 16 18 C -0.14 -2.90 9.19 71.98 0.66 -2.24 16 19 C -0.14 -3.48 8.95 71.98 0.64 -2.83 16 20 N -0.61 -27.90 9.14 -185.44 -1.69 -29.59 16 21 C 0.31 12.97 7.64 138.76 1.06 14.03 16 22 C -0.07 -2.01 10.32 71.23 0.73 -1.28 16 23 N -0.59 -25.25 10.27 -176.29 -1.81 -27.06 16 24 H 0.07 2.40 8.14 -2.39 -0.02 2.39 16 25 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 26 H 0.08 2.43 8.09 -2.39 -0.02 2.41 16 27 H 0.12 6.03 5.68 -2.91 -0.02 6.02 16 28 H 0.04 1.85 8.10 -2.39 -0.02 1.83 16 29 H 0.03 1.61 5.66 -2.39 -0.01 1.59 16 30 H 0.26 13.87 8.31 -92.71 -0.77 13.10 16 31 H 0.07 2.71 5.68 -2.39 -0.01 2.70 16 32 H 0.06 2.34 8.07 -2.39 -0.02 2.33 16 33 H 0.06 1.79 8.14 -2.38 -0.02 1.77 16 34 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.07 1.78 8.14 -2.39 -0.02 1.77 16 36 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.07 1.19 8.14 -2.39 -0.02 1.18 16 38 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.04 1.25 6.57 -2.38 -0.02 1.23 16 40 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 42 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 43 H 0.08 2.38 8.14 -2.38 -0.02 2.36 16 44 H 0.09 2.46 8.14 -2.38 -0.02 2.44 16 Total: -1.00 -59.91 351.14 4.78 -55.14 By element: Atomic # 1 Polarization: 19.59 SS G_CDS: 0.96 Total: 20.55 kcal Atomic # 6 Polarization: 3.73 SS G_CDS: 6.87 Total: 10.60 kcal Atomic # 7 Polarization: -126.37 SS G_CDS: -5.08 Total: -131.45 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Total: -59.91 4.78 -55.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189532542.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.013 kcal (2) G-P(sol) polarization free energy of solvation -59.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds