Wall clock time and date at job start Mon Mar 30 2020 02:14:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42906 * 113.99691 * 2 1 4 4 C 1.53005 * 109.46271 * 180.02562 * 3 2 1 5 5 H 1.09005 * 109.46260 * 186.73971 * 4 3 2 6 6 C 1.52994 * 109.47490 * 306.73803 * 4 3 2 7 7 C 1.50700 * 109.47438 * 185.00643 * 6 4 3 8 8 C 1.38237 * 119.99842 * 269.72907 * 7 6 4 9 9 C 1.38231 * 120.00268 * 180.32147 * 8 7 6 10 10 C 1.38235 * 119.99819 * 359.94749 * 9 8 7 11 11 C 1.38237 * 120.00058 * 0.02864 * 10 9 8 12 12 C 1.38234 * 120.00054 * 359.97438 * 11 10 9 13 13 N 1.46889 * 109.47320 * 66.74547 * 4 3 2 14 14 C 1.46900 * 110.99958 * 307.06681 * 13 4 3 15 15 C 1.46902 * 111.00229 * 71.02187 * 13 4 3 16 16 C 1.53008 * 109.47232 * 170.00032 * 15 13 4 17 17 C 1.50694 * 109.46861 * 179.97438 * 16 15 13 18 18 H 1.07994 * 120.00777 * 0.02562 * 17 16 15 19 19 C 1.37884 * 119.99764 * 180.02562 * 17 16 15 20 20 N 1.31517 * 119.99826 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 120.00198 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46796 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47051 * 120.00016 * 21 19 17 24 24 H 1.48497 * 109.46922 * 240.00089 * 21 19 17 25 25 H 1.08997 * 109.46784 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46998 * 300.00005 * 1 2 3 27 27 H 1.08998 * 109.47044 * 59.99773 * 1 2 3 28 28 H 1.08992 * 109.47005 * 60.00181 * 3 2 1 29 29 H 1.08997 * 109.47044 * 299.99774 * 3 2 1 30 30 H 1.09002 * 109.46972 * 65.00420 * 6 4 3 31 31 H 1.09004 * 109.47558 * 305.00485 * 6 4 3 32 32 H 1.08001 * 119.99975 * 0.27389 * 8 7 6 33 33 H 1.08000 * 120.00295 * 179.97438 * 9 8 7 34 34 H 1.07999 * 120.00063 * 179.97438 * 10 9 8 35 35 H 1.07999 * 120.00183 * 179.97438 * 11 10 9 36 36 H 1.08000 * 120.00339 * 179.97438 * 12 11 10 37 37 H 1.08998 * 109.47068 * 69.19101 * 14 13 4 38 38 H 1.09000 * 109.47294 * 189.18639 * 14 13 4 39 39 H 1.08993 * 109.47418 * 309.18566 * 14 13 4 40 40 H 1.09006 * 109.46939 * 289.99681 * 15 13 4 41 41 H 1.08998 * 109.47370 * 50.00319 * 15 13 4 42 42 H 1.09001 * 109.47260 * 299.99970 * 16 15 13 43 43 H 1.08998 * 109.46709 * 59.99882 * 16 15 13 44 44 H 0.97004 * 119.99898 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 3.9783 2.1733 0.1200 6 6 3.9763 0.2840 1.1549 7 6 5.4812 0.2632 1.2299 8 6 6.1952 -0.6894 0.5273 9 6 7.5753 -0.7127 0.6013 10 6 8.2416 0.2174 1.3771 11 6 7.5278 1.1703 2.0793 12 6 6.1476 1.1936 2.0054 13 7 3.9799 0.6010 -1.2733 14 6 3.2743 -0.6572 -1.5504 15 6 3.8093 1.5545 -2.3777 16 6 4.5048 1.0151 -3.6293 17 6 4.3293 1.9929 -4.7624 18 1 3.7773 2.9078 -4.6056 19 6 4.8734 1.7195 -5.9995 20 7 5.5461 0.6056 -6.1903 21 14 4.6552 2.9313 -7.4043 22 1 3.8644 4.0970 -6.9341 23 1 5.9872 3.3922 -7.8718 24 1 3.9400 2.2676 -8.5238 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.6886 1.8464 0.8899 29 1 1.6886 1.8464 -0.8900 30 1 3.6068 -0.7279 0.9883 31 1 3.5712 0.6691 2.0908 32 1 5.6746 -1.4161 -0.0789 33 1 8.1331 -1.4572 0.0526 34 1 9.3199 0.1990 1.4352 35 1 8.0483 1.8967 2.6857 36 1 5.5898 1.9378 2.5543 37 1 2.2276 -0.4462 -1.7695 38 1 3.7328 -1.1498 -2.4078 39 1 3.3388 -1.3094 -0.6795 40 1 2.7469 1.6881 -2.5816 41 1 4.2497 2.5127 -2.1019 42 1 5.5673 0.8814 -3.4255 43 1 4.0645 0.0569 -3.9051 44 1 5.9292 0.4135 -7.0605 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000191472490.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:10 Heat of formation + Delta-G solvation = -39.349121 kcal Electronic energy + Delta-G solvation = -22133.058209 eV Core-core repulsion = 19049.566656 eV Total energy + Delta-G solvation = -3083.491553 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.68528 -39.46174 -37.59061 -35.41612 -33.97127 -31.68808 -31.59089 -30.27954 -27.81315 -27.70245 -26.28304 -25.39223 -23.28626 -22.80016 -21.77766 -20.61302 -18.63746 -17.71647 -17.51656 -16.98691 -16.47803 -16.46125 -16.22553 -15.70595 -15.60197 -15.37739 -14.83085 -14.26830 -14.11372 -14.05984 -13.65044 -13.61944 -13.20380 -13.11982 -12.89449 -12.86075 -12.80454 -12.60334 -12.34514 -12.13601 -11.95678 -11.81139 -11.63370 -11.46471 -11.31052 -11.17895 -10.58870 -10.45794 -9.64144 -9.39184 -8.93654 -8.19262 -6.30549 0.63424 0.69400 1.38936 1.39663 1.52739 2.40029 2.85037 3.04246 3.13987 3.24864 3.87663 4.08830 4.13101 4.24892 4.30974 4.34569 4.40821 4.42740 4.49468 4.55418 4.58804 4.61298 4.71954 4.76558 4.80582 4.86770 4.89759 4.98750 5.02565 5.11485 5.15673 5.28404 5.34750 5.39414 5.48787 5.70925 5.72578 5.78442 5.81822 5.94204 6.14097 6.23411 6.30862 6.41067 6.44214 6.87563 7.38420 8.93157 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.012574 B = 0.005419 C = 0.004148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2226.257258 B = 5165.519795 C = 6748.158066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.393 6.393 3 C 0.034 3.966 4 C 0.091 3.909 5 H 0.092 0.908 6 C -0.058 4.058 7 C -0.074 4.074 8 C -0.108 4.108 9 C -0.140 4.140 10 C -0.138 4.138 11 C -0.130 4.130 12 C -0.130 4.130 13 N -0.535 5.535 14 C 0.046 3.954 15 C 0.083 3.917 16 C 0.041 3.959 17 C -0.542 4.542 18 H 0.059 0.941 19 C 0.001 3.999 20 N -0.932 5.932 21 Si 0.966 3.034 22 H -0.261 1.261 23 H -0.278 1.278 24 H -0.278 1.278 25 H 0.094 0.906 26 H 0.055 0.945 27 H 0.033 0.967 28 H 0.075 0.925 29 H 0.037 0.963 30 H 0.074 0.926 31 H 0.094 0.906 32 H 0.107 0.893 33 H 0.120 0.880 34 H 0.134 0.866 35 H 0.141 0.859 36 H 0.139 0.861 37 H 0.037 0.963 38 H 0.030 0.970 39 H 0.076 0.924 40 H 0.018 0.982 41 H 0.057 0.943 42 H -0.013 1.013 43 H -0.010 1.010 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.723 0.343 19.131 19.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.312 6.312 3 C -0.044 4.044 4 C -0.018 4.018 5 H 0.110 0.890 6 C -0.095 4.095 7 C -0.074 4.074 8 C -0.127 4.127 9 C -0.158 4.158 10 C -0.156 4.156 11 C -0.148 4.148 12 C -0.147 4.147 13 N -0.258 5.258 14 C -0.102 4.102 15 C -0.044 4.044 16 C 0.003 3.997 17 C -0.580 4.580 18 H 0.077 0.923 19 C -0.197 4.197 20 N -0.572 5.572 21 Si 0.790 3.210 22 H -0.185 1.185 23 H -0.204 1.204 24 H -0.203 1.203 25 H 0.113 0.887 26 H 0.074 0.926 27 H 0.051 0.949 28 H 0.093 0.907 29 H 0.055 0.945 30 H 0.093 0.907 31 H 0.112 0.888 32 H 0.125 0.875 33 H 0.138 0.862 34 H 0.151 0.849 35 H 0.158 0.842 36 H 0.157 0.843 37 H 0.055 0.945 38 H 0.049 0.951 39 H 0.095 0.905 40 H 0.036 0.964 41 H 0.076 0.924 42 H 0.005 0.995 43 H 0.009 0.991 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.026 -0.025 19.054 19.474 hybrid contribution -0.870 0.610 -1.462 1.808 sum -4.896 0.584 17.591 18.269 Atomic orbital electron populations 1.22852 0.80637 1.03457 1.00251 1.88046 1.20506 1.27549 1.95148 1.23238 0.94999 0.85367 1.00796 1.21956 0.90818 0.98893 0.90118 0.89004 1.20529 0.90659 1.00909 0.97412 1.19893 0.96023 0.95203 0.96266 1.21075 0.94288 0.99219 0.98075 1.21345 0.94799 1.00021 0.99614 1.21349 1.00599 0.95845 0.97845 1.21379 0.94415 0.98980 1.00011 1.21288 0.94833 0.98880 0.99734 1.62105 1.56869 1.04917 1.01910 1.22308 0.95977 0.91731 1.00190 1.21940 0.96967 0.94577 0.90961 1.18853 0.94224 0.94933 0.91647 1.21659 1.34069 1.05912 0.96404 0.92302 1.25968 0.94703 0.97279 1.01747 1.70132 1.36734 1.26172 1.24202 0.85395 0.78088 0.78978 0.78547 1.18499 1.20355 1.20344 0.88743 0.92643 0.94868 0.90665 0.94483 0.90732 0.88790 0.87462 0.86158 0.84852 0.84156 0.84333 0.94510 0.95135 0.90500 0.96403 0.92435 0.99454 0.99122 0.92840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.46 11.01 113.37 1.25 1.71 16 2 O -0.39 -9.90 6.31 -148.98 -0.94 -10.84 16 3 C 0.03 0.84 5.19 71.98 0.37 1.21 16 4 C 0.09 2.54 2.27 44.92 0.10 2.64 16 5 H 0.09 2.53 7.91 -2.38 -0.02 2.51 16 6 C -0.06 -1.40 4.47 29.85 0.13 -1.27 16 7 C -0.07 -2.01 4.95 -19.87 -0.10 -2.11 16 8 C -0.11 -3.34 9.32 22.27 0.21 -3.13 16 9 C -0.14 -4.05 10.05 22.27 0.22 -3.83 16 10 C -0.14 -3.51 10.05 22.27 0.22 -3.28 16 11 C -0.13 -3.02 10.05 22.27 0.22 -2.80 16 12 C -0.13 -3.09 9.70 22.27 0.22 -2.88 16 13 N -0.53 -19.60 4.10 -897.05 -3.68 -23.27 16 14 C 0.05 1.65 7.62 127.69 0.97 2.62 16 15 C 0.08 3.62 4.50 86.31 0.39 4.01 16 16 C 0.04 2.27 4.89 29.85 0.15 2.41 16 17 C -0.54 -31.77 9.11 25.60 0.23 -31.53 16 18 H 0.06 3.30 7.74 -2.91 -0.02 3.27 16 19 C 0.00 0.05 5.46 84.66 0.46 0.51 16 20 N -0.93 -58.41 13.29 21.45 0.28 -58.13 16 21 Si 0.97 45.15 29.54 68.60 2.03 47.18 16 22 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 23 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 24 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 25 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 26 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.03 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.08 1.42 8.14 -2.39 -0.02 1.41 16 29 H 0.04 1.04 6.69 -2.39 -0.02 1.02 16 30 H 0.07 1.94 5.73 -2.39 -0.01 1.93 16 31 H 0.09 1.79 8.09 -2.38 -0.02 1.77 16 32 H 0.11 3.48 8.06 -2.91 -0.02 3.46 16 33 H 0.12 3.22 8.06 -2.91 -0.02 3.20 16 34 H 0.13 2.74 8.06 -2.91 -0.02 2.71 16 35 H 0.14 2.45 8.06 -2.91 -0.02 2.42 16 36 H 0.14 2.54 8.06 -2.91 -0.02 2.52 16 37 H 0.04 1.33 5.99 -2.39 -0.01 1.31 16 38 H 0.03 1.27 6.73 -2.39 -0.02 1.26 16 39 H 0.08 2.46 5.80 -2.39 -0.01 2.45 16 40 H 0.02 0.77 6.89 -2.38 -0.02 0.76 16 41 H 0.06 2.46 7.92 -2.39 -0.02 2.44 16 42 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 43 H -0.01 -0.57 6.67 -2.39 -0.02 -0.59 16 44 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 Total: -1.00 -68.57 348.63 3.70 -64.87 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: 0.95 Total: 15.91 kcal Atomic # 6 Polarization: -40.77 SS G_CDS: 5.06 Total: -35.71 kcal Atomic # 7 Polarization: -78.01 SS G_CDS: -3.39 Total: -81.40 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: -0.94 Total: -10.84 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -68.57 3.70 -64.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191472490.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.520 kcal (2) G-P(sol) polarization free energy of solvation -68.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds