Wall clock time and date at job start Mon Mar 30 2020 01:50:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35899 * 116.99916 * 2 1 4 4 C 1.38731 * 120.05553 * 179.97438 * 3 2 1 5 5 C 1.38144 * 119.94613 * 179.97438 * 4 3 2 6 6 C 1.38268 * 120.05620 * 0.02562 * 5 4 3 7 7 C 1.50697 * 119.94718 * 179.97438 * 6 5 4 8 8 H 1.09007 * 109.46836 * 359.97438 * 7 6 5 9 9 C 1.53000 * 109.47049 * 119.99796 * 7 6 5 10 10 C 1.52996 * 109.47140 * 240.00085 * 7 6 5 11 11 N 1.46901 * 109.47150 * 174.16872 * 10 7 6 12 12 C 1.46892 * 111.00294 * 86.33666 * 11 10 7 13 13 C 1.46904 * 110.99906 * 210.29435 * 11 10 7 14 14 H 1.09000 * 109.47045 * 299.99573 * 13 11 10 15 15 C 1.53001 * 109.47294 * 59.99546 * 13 11 10 16 16 C 1.50699 * 109.46999 * 180.02562 * 13 11 10 17 17 H 1.08002 * 120.00315 * 359.97438 * 16 13 11 18 18 C 1.37873 * 120.00080 * 180.02562 * 16 13 11 19 19 N 1.31519 * 120.00487 * 179.97438 * 18 16 13 20 20 Si 1.86802 * 119.99906 * 359.97438 * 18 16 13 21 21 H 1.48507 * 109.47177 * 90.00286 * 20 18 16 22 22 H 1.48500 * 109.47333 * 210.00029 * 20 18 16 23 23 H 1.48504 * 109.47286 * 330.00362 * 20 18 16 24 24 C 1.38266 * 120.10957 * 0.27051 * 6 5 4 25 25 C 1.38152 * 120.05628 * 359.45411 * 24 6 5 26 26 H 1.08999 * 109.47165 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47095 * 300.00110 * 1 2 3 28 28 H 1.08997 * 109.47203 * 60.00062 * 1 2 3 29 29 H 1.08003 * 120.02604 * 359.95815 * 4 3 2 30 30 H 1.08002 * 119.97397 * 180.02562 * 5 4 3 31 31 H 1.09007 * 109.46791 * 192.78067 * 9 7 6 32 32 H 1.08998 * 109.47334 * 312.77727 * 9 7 6 33 33 H 1.09000 * 109.46840 * 72.78418 * 9 7 6 34 34 H 1.09000 * 109.47314 * 54.16728 * 10 7 6 35 35 H 1.09002 * 109.47115 * 294.16456 * 10 7 6 36 36 H 1.09005 * 109.46999 * 63.02935 * 12 11 10 37 37 H 1.09004 * 109.47513 * 183.02791 * 12 11 10 38 38 H 1.08998 * 109.47110 * 303.02956 * 12 11 10 39 39 H 1.08998 * 109.47157 * 300.00279 * 15 13 11 40 40 H 1.09000 * 109.47052 * 60.00032 * 15 13 11 41 41 H 1.09002 * 109.47255 * 179.97438 * 15 13 11 42 42 H 0.96995 * 119.99804 * 179.97438 * 19 18 16 43 43 H 1.07998 * 119.97556 * 179.70484 * 24 6 5 44 44 H 1.07995 * 120.03104 * 180.27362 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4313 1.2848 0.0005 5 6 4.0561 2.5169 0.0000 6 6 3.3019 3.6758 -0.0005 7 6 3.9861 5.0186 -0.0005 8 1 5.0667 4.8757 0.0004 9 6 3.5755 5.8001 -1.2501 10 6 3.5745 5.8006 1.2484 11 7 4.3458 7.0488 1.3208 12 6 3.6934 8.1163 0.5511 13 6 4.5549 7.4581 2.7161 14 1 3.5895 7.6155 3.1972 15 6 5.3226 6.3630 3.4593 16 6 5.3473 8.7395 2.7503 17 1 5.6643 9.2032 1.8278 18 6 5.6685 9.3194 3.9592 19 7 6.3605 10.4374 3.9891 20 14 5.1209 8.5170 5.5547 21 1 6.1655 7.5671 6.0152 22 1 4.9124 9.5625 6.5885 23 1 3.8496 7.7834 5.3291 24 6 1.9211 3.6048 0.0051 25 6 1.2915 2.3751 -0.0001 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 4.0208 0.3799 0.0016 30 1 5.1345 2.5750 0.0000 31 1 4.2312 6.6625 -1.3710 32 1 3.6579 5.1556 -2.1252 33 1 2.5450 6.1392 -1.1443 34 1 3.7726 5.1991 2.1355 35 1 2.5108 6.0333 1.1972 36 1 2.7184 8.3346 0.9870 37 1 4.3121 9.0133 0.5773 38 1 3.5654 7.7931 -0.4820 39 1 4.7490 5.4365 3.4346 40 1 6.2880 6.2057 2.9783 41 1 5.4781 6.6670 4.4945 42 1 6.5861 10.8454 4.8396 43 1 1.3342 4.5114 0.0095 44 1 0.2129 2.3201 -0.0001 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000245642503.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:55 Heat of formation + Delta-G solvation = -17.429538 kcal Electronic energy + Delta-G solvation = -21764.459851 eV Core-core repulsion = 18681.918802 eV Total energy + Delta-G solvation = -3082.541049 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.14816 -39.65187 -38.31501 -35.52695 -34.04673 -31.98118 -31.84610 -29.83983 -28.86274 -27.91678 -26.60616 -24.86975 -24.08652 -23.10229 -21.40569 -20.70535 -19.07164 -18.78354 -17.33334 -17.28103 -16.60814 -16.43256 -16.01262 -15.68317 -15.39267 -15.10910 -14.76409 -14.57710 -14.51284 -14.25285 -13.89530 -13.71608 -13.58917 -13.19414 -13.06120 -12.90057 -12.74445 -12.56109 -12.32977 -12.07483 -12.01646 -11.94591 -11.58977 -11.49017 -11.44370 -11.23124 -10.86397 -10.72227 -9.91049 -9.03977 -8.90226 -8.27754 -6.30301 0.43662 0.49140 1.29421 1.33931 1.43832 2.31490 2.41946 2.81826 3.05876 3.25628 3.84810 3.98492 4.03141 4.14482 4.23099 4.36355 4.40099 4.45669 4.49913 4.52250 4.57579 4.62664 4.66814 4.72316 4.74806 4.75526 4.80579 4.89493 4.92589 5.07446 5.14326 5.15949 5.25290 5.34296 5.37792 5.43693 5.44952 5.53476 5.66417 5.81562 5.87720 6.06053 6.42905 6.48825 6.73859 6.78085 7.34704 8.88553 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.026924 B = 0.003813 C = 0.003580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.705833 B = 7340.767021 C = 7818.293924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.337 6.337 3 C 0.106 3.894 4 C -0.161 4.161 5 C -0.082 4.082 6 C -0.113 4.113 7 C -0.033 4.033 8 H 0.077 0.923 9 C -0.139 4.139 10 C 0.056 3.944 11 N -0.534 5.534 12 C 0.027 3.973 13 C 0.184 3.816 14 H -0.015 1.015 15 C -0.142 4.142 16 C -0.505 4.505 17 H 0.045 0.955 18 C 0.013 3.987 19 N -0.948 5.948 20 Si 0.946 3.054 21 H -0.265 1.265 22 H -0.298 1.298 23 H -0.255 1.255 24 C -0.081 4.081 25 C -0.208 4.208 26 H 0.118 0.882 27 H 0.060 0.940 28 H 0.063 0.937 29 H 0.138 0.862 30 H 0.139 0.861 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.057 0.943 34 H 0.066 0.934 35 H 0.036 0.964 36 H 0.009 0.991 37 H 0.046 0.954 38 H 0.096 0.904 39 H 0.062 0.938 40 H 0.056 0.944 41 H 0.033 0.967 42 H 0.265 0.735 43 H 0.130 0.870 44 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.566 -20.401 -9.269 25.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.251 6.251 3 C 0.061 3.939 4 C -0.179 4.179 5 C -0.099 4.099 6 C -0.113 4.113 7 C -0.052 4.052 8 H 0.095 0.905 9 C -0.196 4.196 10 C -0.072 4.072 11 N -0.258 5.258 12 C -0.121 4.121 13 C 0.076 3.924 14 H 0.002 0.998 15 C -0.199 4.199 16 C -0.543 4.543 17 H 0.063 0.937 18 C -0.184 4.184 19 N -0.589 5.589 20 Si 0.774 3.226 21 H -0.191 1.191 22 H -0.226 1.226 23 H -0.179 1.179 24 C -0.099 4.099 25 C -0.226 4.226 26 H 0.136 0.864 27 H 0.079 0.921 28 H 0.082 0.918 29 H 0.156 0.844 30 H 0.157 0.843 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.085 0.915 35 H 0.054 0.946 36 H 0.027 0.973 37 H 0.064 0.936 38 H 0.114 0.886 39 H 0.080 0.920 40 H 0.075 0.925 41 H 0.051 0.949 42 H 0.074 0.926 43 H 0.148 0.852 44 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -11.961 -20.548 -9.371 25.556 hybrid contribution -0.852 0.656 1.327 1.708 sum -12.813 -19.892 -8.044 24.991 Atomic orbital electron populations 1.23306 0.76709 1.05429 1.02085 1.86031 1.23261 1.26903 1.88890 1.19208 0.92698 0.84591 0.97367 1.20602 0.91718 0.98953 1.06641 1.21092 1.00598 0.90806 0.97454 1.19860 0.93874 0.94795 1.02803 1.19944 0.99841 0.90621 0.94779 0.90493 1.21972 1.01223 0.99881 0.96485 1.22334 0.95012 0.91313 0.98502 1.61798 1.48091 1.03739 1.12193 1.22619 0.95608 0.95027 0.98860 1.19523 0.93359 0.93205 0.86351 0.99776 1.22137 1.01295 0.98169 0.98299 1.21265 1.33280 1.06530 0.93249 0.93653 1.25741 0.94890 0.95306 1.02479 1.70028 1.41071 1.20712 1.27103 0.85895 0.79998 0.77499 0.79219 1.19089 1.22612 1.17922 1.20962 0.94092 0.97518 0.97325 1.21408 1.00892 0.91859 1.08476 0.86363 0.92101 0.91791 0.84419 0.84271 0.91945 0.92125 0.92433 0.91543 0.94552 0.97287 0.93556 0.88554 0.91960 0.92486 0.94875 0.92572 0.85217 0.83753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.81 113.37 1.11 1.33 16 2 O -0.34 -6.74 10.50 -92.41 -0.97 -7.71 16 3 C 0.11 2.32 6.69 22.51 0.15 2.47 16 4 C -0.16 -3.51 9.99 22.37 0.22 -3.29 16 5 C -0.08 -1.83 9.66 22.25 0.22 -1.61 16 6 C -0.11 -2.68 4.74 -19.85 -0.09 -2.77 16 7 C -0.03 -0.87 2.76 -11.54 -0.03 -0.90 16 8 H 0.08 2.17 7.87 -2.38 -0.02 2.15 16 9 C -0.14 -3.30 7.32 71.98 0.53 -2.77 16 10 C 0.06 1.80 4.24 86.30 0.37 2.16 16 11 N -0.53 -21.42 4.47 -901.47 -4.03 -25.45 16 12 C 0.03 1.01 8.75 127.69 1.12 2.13 16 13 C 0.18 8.67 1.64 44.17 0.07 8.74 16 14 H -0.02 -0.74 7.20 -2.39 -0.02 -0.76 16 15 C -0.14 -6.05 8.55 71.98 0.62 -5.44 16 16 C -0.50 -28.88 8.50 25.60 0.22 -28.66 16 17 H 0.05 2.87 6.64 -2.91 -0.02 2.86 16 18 C 0.01 0.75 5.45 84.65 0.46 1.22 16 19 N -0.95 -59.58 13.96 21.45 0.30 -59.28 16 20 Si 0.95 45.47 24.37 68.60 1.67 47.14 16 21 H -0.26 -12.09 6.87 99.48 0.68 -11.41 16 22 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 23 H -0.25 -11.53 6.53 99.48 0.65 -10.88 16 24 C -0.08 -1.78 8.87 22.26 0.20 -1.58 16 25 C -0.21 -4.18 9.04 22.37 0.20 -3.98 16 26 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.06 0.63 7.66 -2.38 -0.02 0.61 16 28 H 0.06 0.62 7.66 -2.39 -0.02 0.60 16 29 H 0.14 2.61 8.06 -2.91 -0.02 2.58 16 30 H 0.14 2.74 7.94 -2.91 -0.02 2.72 16 31 H 0.06 1.63 6.20 -2.38 -0.01 1.61 16 32 H 0.06 1.28 8.08 -2.39 -0.02 1.26 16 33 H 0.06 1.27 7.54 -2.39 -0.02 1.25 16 34 H 0.07 2.18 5.43 -2.39 -0.01 2.17 16 35 H 0.04 1.10 7.19 -2.39 -0.02 1.09 16 36 H 0.01 0.33 8.11 -2.38 -0.02 0.31 16 37 H 0.05 2.06 6.20 -2.38 -0.01 2.04 16 38 H 0.10 2.97 4.19 -2.39 -0.01 2.96 16 39 H 0.06 2.25 5.97 -2.39 -0.01 2.24 16 40 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 41 H 0.03 1.45 3.27 -2.39 -0.01 1.44 16 42 H 0.27 15.64 8.31 -92.71 -0.77 14.86 16 43 H 0.13 2.60 7.39 -2.91 -0.02 2.58 16 44 H 0.14 2.19 6.30 -2.91 -0.02 2.17 16 Total: -1.00 -67.30 333.30 3.23 -64.07 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: 0.90 Total: 14.16 kcal Atomic # 6 Polarization: -38.29 SS G_CDS: 5.35 Total: -32.94 kcal Atomic # 7 Polarization: -81.01 SS G_CDS: -3.73 Total: -84.73 kcal Atomic # 8 Polarization: -6.74 SS G_CDS: -0.97 Total: -7.71 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 1.67 Total: 47.14 kcal Total: -67.30 3.23 -64.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000245642503.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.644 kcal (2) G-P(sol) polarization free energy of solvation -67.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds