Wall clock time and date at job start Mon Mar 30 2020 02:28:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30835 * 125.89394 * 2 1 4 4 N 1.40087 * 108.20386 * 179.97438 * 3 2 1 5 5 C 1.46503 * 126.03801 * 179.97438 * 4 3 2 6 6 C 1.34951 * 107.92494 * 359.75554 * 4 3 2 7 7 C 1.50703 * 126.12768 * 180.23763 * 6 4 3 8 8 C 1.35316 * 107.74181 * 0.39154 * 6 4 3 9 9 C 1.50702 * 126.03393 * 179.87729 * 8 6 4 10 10 H 1.08994 * 110.73170 * 11.60856 * 9 8 6 11 11 C 1.54943 * 110.66307 * 248.51704 * 9 8 6 12 12 C 1.54603 * 102.92143 * 204.15424 * 11 9 8 13 13 C 1.53997 * 105.13654 * 21.95456 * 12 11 9 14 14 N 1.47897 * 107.06071 * 1.22967 * 13 12 11 15 15 C 1.46904 * 110.99722 * 214.15413 * 14 13 12 16 16 H 1.09000 * 109.47038 * 299.86762 * 15 14 13 17 17 C 1.53005 * 109.46661 * 179.87232 * 15 14 13 18 18 C 1.50701 * 109.47195 * 59.87619 * 15 14 13 19 19 H 1.08002 * 119.99761 * 359.97438 * 18 15 14 20 20 C 1.37871 * 119.99694 * 180.27796 * 18 15 14 21 21 N 1.31514 * 120.00482 * 359.71466 * 20 18 15 22 22 Si 1.86801 * 119.99746 * 179.72062 * 20 18 15 23 23 H 1.48504 * 109.47266 * 60.00049 * 22 20 18 24 24 H 1.48504 * 109.46970 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47383 * 299.99456 * 22 20 18 26 26 H 1.09002 * 109.46736 * 270.02676 * 1 2 3 27 27 H 1.09000 * 109.47129 * 30.03199 * 1 2 3 28 28 H 1.09002 * 109.46311 * 150.02922 * 1 2 3 29 29 H 1.09000 * 109.46765 * 90.02480 * 5 4 3 30 30 H 1.08998 * 109.47104 * 210.02329 * 5 4 3 31 31 H 1.08996 * 109.46947 * 330.02522 * 5 4 3 32 32 H 1.08999 * 109.46942 * 270.17634 * 7 6 4 33 33 H 1.08999 * 109.46928 * 30.18265 * 7 6 4 34 34 H 1.08997 * 109.46938 * 150.17669 * 7 6 4 35 35 H 1.09001 * 110.72360 * 85.79763 * 11 9 8 36 36 H 1.08999 * 110.87927 * 322.57761 * 11 9 8 37 37 H 1.08996 * 110.30525 * 263.04350 * 12 11 9 38 38 H 1.08997 * 110.30774 * 140.87513 * 12 11 9 39 39 H 1.08998 * 109.91595 * 241.86846 * 13 12 11 40 40 H 1.09002 * 110.07802 * 120.67427 * 13 12 11 41 41 H 1.08995 * 109.47438 * 299.99503 * 17 15 14 42 42 H 1.08996 * 109.47069 * 60.00362 * 17 15 14 43 43 H 1.09004 * 109.46658 * 179.97438 * 17 15 14 44 44 H 0.96995 * 120.00207 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0599 0.0000 4 7 3.6087 0.6342 0.0006 5 6 4.7899 1.5010 0.0003 6 6 3.6143 -0.7153 0.0064 7 6 4.8351 -1.5988 0.0142 8 6 2.3272 -1.1329 0.0006 9 6 1.8601 -2.5657 0.0014 10 1 2.6888 -3.2416 0.2124 11 6 1.1929 -2.9240 -1.3503 12 6 0.2652 -4.1028 -0.9762 13 6 0.0320 -3.9656 0.5398 14 7 0.7628 -2.7589 0.9837 15 6 1.2964 -2.9361 2.3409 16 1 0.4747 -3.1193 3.0333 17 6 2.0468 -1.6713 2.7630 18 6 2.2408 -4.1104 2.3600 19 1 2.4257 -4.6694 1.4545 20 6 2.8637 -4.4749 3.5346 21 7 2.6383 -3.7945 4.6373 22 14 4.0283 -5.9353 3.5600 23 1 5.1511 -5.6894 2.6197 24 1 4.5640 -6.1174 4.9330 25 1 3.2961 -7.1596 3.1475 26 1 -0.3633 0.0005 1.0277 27 1 -0.3633 0.8897 -0.5143 28 1 -0.3632 -0.8903 -0.5134 29 1 5.0828 1.7162 1.0279 30 1 5.6093 0.9982 -0.5134 31 1 4.5562 2.4332 -0.5139 32 1 5.1346 -1.8136 -1.0116 33 1 5.6486 -1.0899 0.5313 34 1 4.6051 -2.5318 0.5285 35 1 1.9409 -3.2379 -2.0784 36 1 0.6135 -2.0836 -1.7324 37 1 0.7513 -5.0524 -1.1997 38 1 -0.6802 -4.0253 -1.5131 39 1 0.4181 -4.8445 1.0559 40 1 -1.0323 -3.8519 0.7459 41 1 2.8684 -1.4882 2.0707 42 1 1.3638 -0.8220 2.7493 43 1 2.4423 -1.8027 3.7702 44 1 3.0763 -4.0512 5.4637 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000247441795.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:26 Heat of formation + Delta-G solvation = 80.740481 kcal Electronic energy + Delta-G solvation = -23643.296896 eV Core-core repulsion = 20597.305570 eV Total energy + Delta-G solvation = -3045.991326 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.94199 -38.12188 -33.76227 -33.48798 -31.97496 -31.06446 -29.10269 -28.33721 -27.34055 -25.82044 -25.03512 -24.64680 -21.56192 -20.09278 -19.72472 -18.93109 -18.52370 -16.36272 -15.67203 -15.31670 -15.13998 -14.70119 -14.04233 -13.48193 -13.29563 -13.13811 -13.06239 -12.79069 -12.54268 -12.32715 -12.01902 -11.95962 -11.94821 -11.45207 -11.38279 -11.14321 -11.01932 -10.92994 -10.72305 -10.61877 -10.38895 -10.15771 -10.00215 -9.89415 -9.73924 -9.58019 -9.12195 -8.43877 -8.37549 -7.38920 -7.08348 -5.94582 -4.06954 2.40015 2.99650 3.26521 3.32934 3.34449 3.40691 4.40466 4.82959 5.12188 5.25241 5.29690 5.32625 5.45443 5.46354 5.52279 5.56866 5.60983 5.74759 5.82100 5.93922 6.13681 6.15739 6.25984 6.29791 6.35080 6.40797 6.45953 6.53789 6.74308 6.78643 6.82501 6.95624 7.01720 7.10782 7.26172 7.35471 7.39055 7.57245 7.68286 7.80835 8.06930 8.24826 8.34966 8.39442 8.52180 9.04568 9.59141 11.05182 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.015667 B = 0.007995 C = 0.006586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.793167 B = 3501.352418 C = 4250.633447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.103 3.897 3 N -0.317 5.317 4 N -0.385 5.385 5 C 0.109 3.891 6 C 0.076 3.924 7 C -0.091 4.091 8 C -0.179 4.179 9 C 0.145 3.855 10 H 0.071 0.929 11 C -0.117 4.117 12 C -0.128 4.128 13 C 0.037 3.963 14 N -0.507 5.507 15 C 0.204 3.796 16 H 0.034 0.966 17 C -0.127 4.127 18 C -0.538 4.538 19 H 0.056 0.944 20 C 0.069 3.931 21 N -0.884 5.884 22 Si 0.882 3.118 23 H -0.278 1.278 24 H -0.288 1.288 25 H -0.278 1.278 26 H 0.076 0.924 27 H 0.051 0.949 28 H 0.081 0.919 29 H 0.066 0.934 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.070 0.930 33 H 0.062 0.938 34 H 0.094 0.906 35 H 0.055 0.945 36 H 0.066 0.934 37 H 0.056 0.944 38 H 0.058 0.942 39 H 0.060 0.940 40 H 0.058 0.942 41 H 0.039 0.961 42 H 0.006 0.994 43 H 0.073 0.927 44 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.742 4.953 -10.698 11.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.063 4.063 3 N -0.140 5.140 4 N -0.168 5.168 5 C -0.033 4.033 6 C -0.050 4.050 7 C -0.150 4.150 8 C -0.191 4.191 9 C 0.035 3.965 10 H 0.089 0.911 11 C -0.155 4.155 12 C -0.166 4.166 13 C -0.092 4.092 14 N -0.231 5.231 15 C 0.097 3.903 16 H 0.052 0.948 17 C -0.185 4.185 18 C -0.577 4.577 19 H 0.074 0.926 20 C -0.134 4.134 21 N -0.522 5.522 22 Si 0.710 3.290 23 H -0.204 1.204 24 H -0.214 1.214 25 H -0.204 1.204 26 H 0.095 0.905 27 H 0.069 0.931 28 H 0.100 0.900 29 H 0.085 0.915 30 H 0.098 0.902 31 H 0.100 0.900 32 H 0.088 0.912 33 H 0.081 0.919 34 H 0.113 0.887 35 H 0.074 0.926 36 H 0.085 0.915 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.076 0.924 41 H 0.057 0.943 42 H 0.026 0.974 43 H 0.091 0.909 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.614 6.783 -10.450 12.562 hybrid contribution 1.439 -2.356 0.358 2.784 sum 3.053 4.426 -10.092 11.435 Atomic orbital electron populations 1.20083 0.86918 1.01568 1.03035 1.22043 0.96696 0.89905 0.97674 1.77185 0.86126 1.22889 1.27795 1.48062 1.05201 1.03925 1.59624 1.21631 0.84395 0.94600 1.02675 1.20665 0.97000 0.84214 1.03079 1.20448 0.92960 0.99349 1.02230 1.19394 0.90301 0.95876 1.13502 1.20822 0.94661 0.90335 0.90651 0.91100 1.22532 0.98096 0.97727 0.97170 1.22372 0.99003 0.98015 0.97219 1.22695 0.98479 0.94809 0.93218 1.65031 1.21179 1.33221 1.03712 1.19308 0.93512 0.93075 0.84445 0.94838 1.21849 0.98569 0.95495 1.02615 1.21645 1.27029 1.14026 0.94981 0.92591 1.24892 0.96517 0.96229 0.95712 1.69891 1.43263 1.39360 0.99731 0.86826 0.81506 0.83620 0.77025 1.20388 1.21373 1.20381 0.90540 0.93050 0.89986 0.91497 0.90247 0.90000 0.91176 0.91877 0.88725 0.92603 0.91546 0.92498 0.92367 0.92181 0.92356 0.94251 0.97441 0.90871 0.93003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.95 9.49 36.01 0.34 -0.61 16 2 C 0.10 1.95 6.79 -82.41 -0.56 1.39 16 3 N -0.32 -6.06 12.58 33.67 0.42 -5.64 16 4 N -0.38 -6.54 4.01 -63.88 -0.26 -6.80 16 5 C 0.11 1.29 11.09 59.85 0.66 1.96 16 6 C 0.08 1.35 5.69 -82.26 -0.47 0.89 16 7 C -0.09 -1.37 9.63 36.01 0.35 -1.02 16 8 C -0.18 -3.41 2.70 -105.05 -0.28 -3.69 16 9 C 0.14 2.78 1.96 -66.93 -0.13 2.65 16 10 H 0.07 1.52 4.81 -51.93 -0.25 1.27 16 11 C -0.12 -1.89 6.21 -24.86 -0.15 -2.05 16 12 C -0.13 -2.01 6.93 -25.37 -0.18 -2.19 16 13 C 0.04 0.69 6.33 -2.75 -0.02 0.67 16 14 N -0.51 -10.53 3.90 -217.45 -0.85 -11.38 16 15 C 0.20 5.03 2.42 -68.86 -0.17 4.86 16 16 H 0.03 0.93 8.14 -51.93 -0.42 0.51 16 17 C -0.13 -3.18 8.02 37.16 0.30 -2.89 16 18 C -0.54 -13.93 6.34 -34.44 -0.22 -14.15 16 19 H 0.06 1.44 6.03 -52.49 -0.32 1.12 16 20 C 0.07 1.85 5.31 -17.82 -0.09 1.75 16 21 N -0.88 -24.89 11.33 55.43 0.63 -24.26 16 22 Si 0.88 20.68 29.54 -169.99 -5.02 15.66 16 23 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 24 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 25 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 26 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 27 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.08 1.32 5.92 -51.93 -0.31 1.01 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.08 0.74 7.68 -51.93 -0.40 0.34 16 31 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.06 0.83 7.74 -51.93 -0.40 0.42 16 34 H 0.09 1.63 7.06 -51.93 -0.37 1.26 16 35 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.07 1.04 6.45 -51.93 -0.33 0.71 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.06 1.28 6.27 -51.93 -0.33 0.95 16 40 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 41 H 0.04 0.95 4.62 -51.93 -0.24 0.71 16 42 H 0.01 0.16 8.04 -51.93 -0.42 -0.25 16 43 H 0.07 2.02 6.08 -51.93 -0.32 1.71 16 44 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 332.02 15.07 5.00 5.00 Total: -1.00 -29.82 332.02 -7.73 -37.55 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: -7.04 Total: 2.29 kcal Atomic # 6 Polarization: -11.81 SS G_CDS: -0.62 Total: -12.43 kcal Atomic # 7 Polarization: -48.02 SS G_CDS: -0.05 Total: -48.07 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -29.82 -7.73 -37.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000247441795.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.290 kcal (2) G-P(sol) polarization free energy of solvation -29.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.549 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds