Wall clock time and date at job start Mon Mar 30 2020 02:28:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30835 * 125.89394 * 2 1 4 4 N 1.40087 * 108.20386 * 179.97438 * 3 2 1 5 5 C 1.46503 * 126.03801 * 179.97438 * 4 3 2 6 6 C 1.34951 * 107.92494 * 359.75554 * 4 3 2 7 7 C 1.50703 * 126.12768 * 180.23763 * 6 4 3 8 8 C 1.35316 * 107.74181 * 0.39154 * 6 4 3 9 9 C 1.50702 * 126.03393 * 179.87729 * 8 6 4 10 10 H 1.08994 * 110.73170 * 11.60856 * 9 8 6 11 11 C 1.54943 * 110.66307 * 248.51704 * 9 8 6 12 12 C 1.54603 * 102.92143 * 204.15424 * 11 9 8 13 13 C 1.53997 * 105.13654 * 21.95456 * 12 11 9 14 14 N 1.47897 * 107.06071 * 1.22967 * 13 12 11 15 15 C 1.46904 * 110.99722 * 214.15413 * 14 13 12 16 16 H 1.09000 * 109.47038 * 299.86762 * 15 14 13 17 17 C 1.53005 * 109.46661 * 179.87232 * 15 14 13 18 18 C 1.50701 * 109.47195 * 59.87619 * 15 14 13 19 19 H 1.08002 * 119.99761 * 359.97438 * 18 15 14 20 20 C 1.37871 * 119.99694 * 180.27796 * 18 15 14 21 21 N 1.31514 * 120.00482 * 359.71466 * 20 18 15 22 22 Si 1.86801 * 119.99746 * 179.72062 * 20 18 15 23 23 H 1.48504 * 109.47266 * 60.00049 * 22 20 18 24 24 H 1.48504 * 109.46970 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47383 * 299.99456 * 22 20 18 26 26 H 1.09002 * 109.46736 * 270.02676 * 1 2 3 27 27 H 1.09000 * 109.47129 * 30.03199 * 1 2 3 28 28 H 1.09002 * 109.46311 * 150.02922 * 1 2 3 29 29 H 1.09000 * 109.46765 * 90.02480 * 5 4 3 30 30 H 1.08998 * 109.47104 * 210.02329 * 5 4 3 31 31 H 1.08996 * 109.46947 * 330.02522 * 5 4 3 32 32 H 1.08999 * 109.46942 * 270.17634 * 7 6 4 33 33 H 1.08999 * 109.46928 * 30.18265 * 7 6 4 34 34 H 1.08997 * 109.46938 * 150.17669 * 7 6 4 35 35 H 1.09001 * 110.72360 * 85.79763 * 11 9 8 36 36 H 1.08999 * 110.87927 * 322.57761 * 11 9 8 37 37 H 1.08996 * 110.30525 * 263.04350 * 12 11 9 38 38 H 1.08997 * 110.30774 * 140.87513 * 12 11 9 39 39 H 1.08998 * 109.91595 * 241.86846 * 13 12 11 40 40 H 1.09002 * 110.07802 * 120.67427 * 13 12 11 41 41 H 1.08995 * 109.47438 * 299.99503 * 17 15 14 42 42 H 1.08996 * 109.47069 * 60.00362 * 17 15 14 43 43 H 1.09004 * 109.46658 * 179.97438 * 17 15 14 44 44 H 0.96995 * 120.00207 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0599 0.0000 4 7 3.6087 0.6342 0.0006 5 6 4.7899 1.5010 0.0003 6 6 3.6143 -0.7153 0.0064 7 6 4.8351 -1.5988 0.0142 8 6 2.3272 -1.1329 0.0006 9 6 1.8601 -2.5657 0.0014 10 1 2.6888 -3.2416 0.2124 11 6 1.1929 -2.9240 -1.3503 12 6 0.2652 -4.1028 -0.9762 13 6 0.0320 -3.9656 0.5398 14 7 0.7628 -2.7589 0.9837 15 6 1.2964 -2.9361 2.3409 16 1 0.4747 -3.1193 3.0333 17 6 2.0468 -1.6713 2.7630 18 6 2.2408 -4.1104 2.3600 19 1 2.4257 -4.6694 1.4545 20 6 2.8637 -4.4749 3.5346 21 7 2.6383 -3.7945 4.6373 22 14 4.0283 -5.9353 3.5600 23 1 5.1511 -5.6894 2.6197 24 1 4.5640 -6.1174 4.9330 25 1 3.2961 -7.1596 3.1475 26 1 -0.3633 0.0005 1.0277 27 1 -0.3633 0.8897 -0.5143 28 1 -0.3632 -0.8903 -0.5134 29 1 5.0828 1.7162 1.0279 30 1 5.6093 0.9982 -0.5134 31 1 4.5562 2.4332 -0.5139 32 1 5.1346 -1.8136 -1.0116 33 1 5.6486 -1.0899 0.5313 34 1 4.6051 -2.5318 0.5285 35 1 1.9409 -3.2379 -2.0784 36 1 0.6135 -2.0836 -1.7324 37 1 0.7513 -5.0524 -1.1997 38 1 -0.6802 -4.0253 -1.5131 39 1 0.4181 -4.8445 1.0559 40 1 -1.0323 -3.8519 0.7459 41 1 2.8684 -1.4882 2.0707 42 1 1.3638 -0.8220 2.7493 43 1 2.4423 -1.8027 3.7702 44 1 3.0763 -4.0512 5.4637 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000247441795.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:25 Heat of formation + Delta-G solvation = 62.818921 kcal Electronic energy + Delta-G solvation = -23644.074033 eV Core-core repulsion = 20597.305570 eV Total energy + Delta-G solvation = -3046.768463 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.30353 -39.68978 -35.57172 -34.83112 -33.30827 -32.91269 -30.32181 -29.69625 -29.08760 -27.23122 -27.03338 -25.87716 -23.19817 -21.56977 -21.36629 -20.27569 -20.01682 -18.20251 -17.22691 -16.81472 -16.48819 -16.24439 -15.71011 -15.03021 -14.83289 -14.46581 -14.28095 -14.21160 -13.94816 -13.69067 -13.51447 -13.30823 -13.29288 -12.98548 -12.84998 -12.72098 -12.67227 -12.56406 -12.46008 -12.09357 -11.98107 -11.81205 -11.78311 -11.59647 -11.41955 -11.09079 -11.01230 -10.44642 -9.76700 -8.86447 -8.79452 -7.97839 -6.19250 1.05648 1.40248 1.41457 1.48223 1.81972 1.99150 2.43257 3.21442 3.55557 3.85456 3.92888 4.11463 4.12435 4.28287 4.39241 4.44162 4.47835 4.62843 4.66259 4.71891 4.75090 4.76867 4.92716 4.98851 5.02421 5.05888 5.07914 5.15520 5.16215 5.23818 5.28026 5.33715 5.44229 5.49225 5.49481 5.59052 5.62675 5.79505 6.00968 6.05762 6.26574 6.34570 6.48147 6.67242 6.99111 7.04644 7.50696 8.98275 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.015667 B = 0.007995 C = 0.006586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.793167 B = 3501.352418 C = 4250.633447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 C 0.088 3.912 3 N -0.341 5.341 4 N -0.384 5.384 5 C 0.097 3.903 6 C 0.073 3.927 7 C -0.088 4.088 8 C -0.206 4.206 9 C 0.147 3.853 10 H 0.048 0.952 11 C -0.109 4.109 12 C -0.117 4.117 13 C 0.032 3.968 14 N -0.507 5.507 15 C 0.213 3.787 16 H -0.008 1.008 17 C -0.105 4.105 18 C -0.535 4.535 19 H 0.058 0.942 20 C 0.019 3.981 21 N -0.917 5.917 22 Si 0.943 3.057 23 H -0.266 1.266 24 H -0.290 1.290 25 H -0.274 1.274 26 H 0.060 0.940 27 H 0.068 0.932 28 H 0.086 0.914 29 H 0.072 0.928 30 H 0.110 0.890 31 H 0.095 0.905 32 H 0.099 0.901 33 H 0.082 0.918 34 H 0.068 0.932 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.065 0.935 38 H 0.085 0.915 39 H 0.032 0.968 40 H 0.065 0.935 41 H 0.045 0.955 42 H 0.000 1.000 43 H 0.043 0.957 44 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.892 4.764 -12.969 14.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.077 4.077 3 N -0.164 5.164 4 N -0.167 5.167 5 C -0.043 4.043 6 C -0.055 4.055 7 C -0.146 4.146 8 C -0.218 4.218 9 C 0.038 3.962 10 H 0.066 0.934 11 C -0.147 4.147 12 C -0.155 4.155 13 C -0.096 4.096 14 N -0.230 5.230 15 C 0.105 3.895 16 H 0.010 0.990 17 C -0.164 4.164 18 C -0.574 4.574 19 H 0.076 0.924 20 C -0.180 4.180 21 N -0.556 5.556 22 Si 0.769 3.231 23 H -0.191 1.191 24 H -0.216 1.216 25 H -0.200 1.200 26 H 0.078 0.922 27 H 0.087 0.913 28 H 0.105 0.895 29 H 0.090 0.910 30 H 0.128 0.872 31 H 0.113 0.887 32 H 0.117 0.883 33 H 0.101 0.899 34 H 0.087 0.913 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.083 0.917 38 H 0.104 0.896 39 H 0.051 0.949 40 H 0.083 0.917 41 H 0.064 0.936 42 H 0.019 0.981 43 H 0.062 0.938 44 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 2.766 6.607 -12.745 14.620 hybrid contribution 1.095 -2.233 1.063 2.704 sum 3.861 4.375 -11.681 13.057 Atomic orbital electron populations 1.20055 0.86028 1.02693 1.02263 1.22326 0.97561 0.89939 0.97902 1.77111 0.87352 1.23375 1.28588 1.48449 1.05611 1.04282 1.58327 1.22041 0.83516 0.94982 1.03742 1.21093 0.97568 0.84957 1.01892 1.20481 0.92386 0.97706 1.04005 1.19505 0.91184 0.95703 1.15363 1.20781 0.93433 0.90323 0.91668 0.93426 1.22500 0.98412 0.98066 0.95696 1.22325 1.00438 0.98280 0.94470 1.22756 0.98418 0.92820 0.95635 1.64953 1.21788 1.34032 1.02270 1.19004 0.91839 0.92588 0.86086 0.98996 1.21604 0.98444 0.95421 1.00886 1.21822 1.26599 1.14045 0.94906 0.92426 1.25630 0.98187 0.98748 0.95436 1.70044 1.44451 1.40953 1.00196 0.85843 0.79800 0.80478 0.76950 1.19137 1.21602 1.19990 0.92156 0.91267 0.89497 0.90959 0.87209 0.88659 0.88253 0.89945 0.91307 0.90757 0.90792 0.91650 0.89622 0.94946 0.91652 0.93582 0.98074 0.93822 0.93263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.69 9.49 71.24 0.68 -1.02 16 2 C 0.09 3.27 6.79 43.10 0.29 3.56 16 3 N -0.34 -12.69 12.58 -47.39 -0.60 -13.29 16 4 N -0.38 -12.37 4.01 -356.03 -1.43 -13.80 16 5 C 0.10 2.05 11.09 127.77 1.42 3.47 16 6 C 0.07 2.46 5.69 41.41 0.24 2.69 16 7 C -0.09 -2.43 9.63 71.24 0.69 -1.74 16 8 C -0.21 -7.67 2.70 -20.14 -0.05 -7.72 16 9 C 0.15 5.55 1.96 44.52 0.09 5.64 16 10 H 0.05 2.03 4.81 -2.39 -0.01 2.01 16 11 C -0.11 -3.25 6.21 31.80 0.20 -3.05 16 12 C -0.12 -3.39 6.93 31.48 0.22 -3.18 16 13 C 0.03 1.21 6.33 86.45 0.55 1.76 16 14 N -0.51 -21.23 3.90 -841.87 -3.29 -24.51 16 15 C 0.21 10.87 2.42 44.17 0.11 10.98 16 16 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 17 C -0.11 -5.46 8.02 71.98 0.58 -4.88 16 18 C -0.53 -28.22 6.34 25.60 0.16 -28.05 16 19 H 0.06 2.98 6.03 -2.91 -0.02 2.96 16 20 C 0.02 1.04 5.31 84.65 0.45 1.49 16 21 N -0.92 -53.09 11.33 21.45 0.24 -52.85 16 22 Si 0.94 42.62 29.54 68.60 2.03 44.65 16 23 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 24 H -0.29 -13.14 7.11 99.48 0.71 -12.44 16 25 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 26 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 27 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 28 H 0.09 2.69 5.92 -2.39 -0.01 2.68 16 29 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.11 1.64 7.68 -2.39 -0.02 1.62 16 31 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 33 H 0.08 1.93 7.74 -2.39 -0.02 1.91 16 34 H 0.07 2.30 7.06 -2.39 -0.02 2.28 16 35 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.07 2.12 6.45 -2.39 -0.02 2.11 16 37 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 39 H 0.03 1.39 6.27 -2.39 -0.01 1.37 16 40 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 41 H 0.05 2.28 4.62 -2.39 -0.01 2.27 16 42 H 0.00 0.01 8.04 -2.39 -0.02 -0.01 16 43 H 0.04 2.50 6.08 -2.38 -0.01 2.48 16 44 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 Total: -1.00 -65.79 332.02 3.54 -62.25 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: 0.98 Total: 17.61 kcal Atomic # 6 Polarization: -25.65 SS G_CDS: 5.60 Total: -20.05 kcal Atomic # 7 Polarization: -99.38 SS G_CDS: -5.07 Total: -104.45 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.65 kcal Total: -65.79 3.54 -62.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000247441795.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.066 kcal (2) G-P(sol) polarization free energy of solvation -65.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.248 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds